Clone RE13279 Report

Search the DGRC for RE13279

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:132
Well:79
Vector:pFlc-1
Associated Gene/TranscriptHP1D3csd-RA
Protein status:RE13279.pep: gold
Preliminary Size:540
Sequenced Size:837

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14193 2001-12-16 Blastp of sequenced clone
CG14193 2002-01-01 Sim4 clustering to Release 2
CG14193 2003-01-01 Sim4 clustering to Release 3
CG14193 2008-04-29 Release 5.5 accounting
CG14193 2008-08-15 Release 5.9 accounting
CG14193 2008-12-18 5.12 accounting

Clone Sequence Records

RE13279.complete Sequence

837 bp (837 high quality bases) assembled on 2001-12-16

GenBank Submission: AY071044

> RE13279.complete
ATTTAACGATTGCACGTGAATTCATTTGGTTTACTTTTGCAAGAGAACTT
TATTGCTAAACGATGGCGGACAAAGAAAACAGCCCCAACAACAAGAACAC
AGGTGGTTTCCCCGCGGAGGAGGAAAAGCAGAAGGAGAACGATCAGCAGA
AGGAGAACGATCAGCAGAAGGAGAACGATCAGCAGGAGGAAGTGCAGGAA
GAGCCGACAAAGGATGAATCCAAGGAGGCCGGTTCGACGCCGCCTCCAAA
GCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTGCTCG
TCGAGTTGTTGGTACAACAGGCAGAACTGGATGCAACCAACGGTGGCAGC
GTGTCAGGGAATCTCGATGGCGGCAATTCCAATGAGTCCCAACCGTTGAA
CGTGCCGCCTACGGATGCGCTCCTGGTCCGCGGCAAAGCAATTGAGAATG
TTATGTACAGCTATATGCTTGGTGACACGGTCTACTTCATTGTCACCTGG
AAGGGATCCAAGTGGGGGGAAGCCGTGCCTGTTCAGGAGATCAAACATGT
GCACCCCAAGCTACTCATTGACTACATTAAGAGCCTGAAGCTACAGGACT
GAAAAAACCTCCGAAGCCCGAGGATTTATAATATAACTGGAGCAGATCTC
CAAATTGACTTTATCCATTATCATTATCCATCCATGAAGAAAATGTTAAA
AGATCTTGAATCAACTCACAGTATTTAAGTTAAATTACTTTATTTTTTTT
TTCGTTTTTGTCTTGTAACAATAAGTTTGCTTCAAAATAAAATTATCCTT
TTTATTGTTTGTAAGTAAAAATAAAAAAAAAAAAAAA

RE13279.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14193-RA 816 CG14193-RA 1..816 1..816 4080 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19079114..19079948 1..818 3840 97.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19190214..19191031 1..818 4090 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19198312..19199129 1..818 4090 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:04:11 has no hits.

RE13279.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:05:15 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19079114..19079228 1..115 100 == Plus
chrX 19079289..19079765 176..652 99 <- Plus
chrX 19079783..19079949 653..822 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:17 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 1..540 63..602 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:38 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 1..540 63..602 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:15:58 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 1..540 63..602 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:11 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 1..540 63..602 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:01 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 1..540 63..602 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:28:03 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 1..816 1..816 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:38 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 1..816 1..816 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:15:58 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 1..816 1..816 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:11 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
CG14193-RA 1..820 1..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:01 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
HP1D3csd-RA 1..816 1..816 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:15 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
X 19190214..19191032 1..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:15 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
X 19190214..19191032 1..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:15 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
X 19190214..19191032 1..822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:15:58 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19084247..19085065 1..822 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:01:52 Download gff for RE13279.complete
Subject Subject Range Query Range Percent Splice Strand
X 19198312..19199130 1..822 99   Plus

RE13279.pep Sequence

Translation from 62 to 601

> RE13279.pep
MADKENSPNNKNTGGFPAEEEKQKENDQQKENDQQKENDQQEEVQEEPTK
DESKEAGSTPPPKHMGVHNSARAELARLLVELLVQQAELDATNGGSVSGN
LDGGNSNESQPLNVPPTDALLVRGKAIENVMYSYMLGDTVYFIVTWKGSK
WGEAVPVQEIKHVHPKLLIDYIKSLKLQD*

RE13279.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19212-PA 79 GG19212-PA 1..79 103..179 196 54.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-PA 179 CG14193-PA 1..179 1..179 934 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22943-PA 205 GM22943-PA 35..100 48..110 162 57.6 Plus
Dsec\GM22942-PA 205 GM22942-PA 35..100 48..110 155 56.1 Plus
Dsec\GM22948-PA 127 GM22948-PA 1..83 1..96 145 49 Plus
Dsec\GM24680-PA 232 GM24680-PA 1..83 1..96 141 49 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24868-PA 385 GD24868-PA 1..108 1..114 237 52.9 Plus
Dsim\GD24869-PA 264 GD24869-PA 1..96 1..109 227 52.3 Plus
Dsim\GD17430-PA 177 GD17430-PA 1..83 1..96 210 52.1 Plus
Dsim\GD25140-PA 151 GD25140-PA 1..107 1..114 203 48.8 Plus

RE13279.hyp Sequence

Translation from 62 to 601

> RE13279.hyp
MADKENSPNNKNTGGFPAEEEKQKENDQQKENDQQKENDQQEEVQEEPTK
DESKEAGSTPPPKHMGVHNSARAELARLLVELLVQQAELDATNGGSVSGN
LDGGNSNESQPLNVPPTDALLVRGKAIENVMYSYMLGDTVYFIVTWKGSK
WGEAVPVQEIKHVHPKLLIDYIKSLKLQD*

RE13279.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
HP1D3csd-PA 179 CG14193-PA 1..179 1..179 934 100 Plus