RE13279.complete Sequence
837 bp (837 high quality bases) assembled on 2001-12-16
GenBank Submission: AY071044
> RE13279.complete
ATTTAACGATTGCACGTGAATTCATTTGGTTTACTTTTGCAAGAGAACTT
TATTGCTAAACGATGGCGGACAAAGAAAACAGCCCCAACAACAAGAACAC
AGGTGGTTTCCCCGCGGAGGAGGAAAAGCAGAAGGAGAACGATCAGCAGA
AGGAGAACGATCAGCAGAAGGAGAACGATCAGCAGGAGGAAGTGCAGGAA
GAGCCGACAAAGGATGAATCCAAGGAGGCCGGTTCGACGCCGCCTCCAAA
GCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTGCTCG
TCGAGTTGTTGGTACAACAGGCAGAACTGGATGCAACCAACGGTGGCAGC
GTGTCAGGGAATCTCGATGGCGGCAATTCCAATGAGTCCCAACCGTTGAA
CGTGCCGCCTACGGATGCGCTCCTGGTCCGCGGCAAAGCAATTGAGAATG
TTATGTACAGCTATATGCTTGGTGACACGGTCTACTTCATTGTCACCTGG
AAGGGATCCAAGTGGGGGGAAGCCGTGCCTGTTCAGGAGATCAAACATGT
GCACCCCAAGCTACTCATTGACTACATTAAGAGCCTGAAGCTACAGGACT
GAAAAAACCTCCGAAGCCCGAGGATTTATAATATAACTGGAGCAGATCTC
CAAATTGACTTTATCCATTATCATTATCCATCCATGAAGAAAATGTTAAA
AGATCTTGAATCAACTCACAGTATTTAAGTTAAATTACTTTATTTTTTTT
TTCGTTTTTGTCTTGTAACAATAAGTTTGCTTCAAAATAAAATTATCCTT
TTTATTGTTTGTAAGTAAAAATAAAAAAAAAAAAAAA
RE13279.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14193-RA | 816 | CG14193-RA | 1..816 | 1..816 | 4080 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 19079114..19079948 | 1..818 | 3840 | 97.6 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19190214..19191031 | 1..818 | 4090 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 19198312..19199129 | 1..818 | 4090 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 03:04:11 has no hits.
RE13279.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:05:15 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 19079114..19079228 | 1..115 | 100 | == | Plus |
chrX | 19079289..19079765 | 176..652 | 99 | <- | Plus |
chrX | 19079783..19079949 | 653..822 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:17 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 1..540 | 63..602 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:38 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 1..540 | 63..602 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:15:58 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 1..540 | 63..602 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:11 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 1..540 | 63..602 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:01 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 1..540 | 63..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:28:03 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 1..816 | 1..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:38 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 1..816 | 1..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:15:58 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 1..816 | 1..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:11 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14193-RA | 1..820 | 1..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:01 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1D3csd-RA | 1..816 | 1..816 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:15 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19190214..19191032 | 1..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:15 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19190214..19191032 | 1..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:15 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19190214..19191032 | 1..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:15:58 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19084247..19085065 | 1..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:01:52 Download gff for
RE13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19198312..19199130 | 1..822 | 99 | | Plus |
RE13279.pep Sequence
Translation from 62 to 601
> RE13279.pep
MADKENSPNNKNTGGFPAEEEKQKENDQQKENDQQKENDQQEEVQEEPTK
DESKEAGSTPPPKHMGVHNSARAELARLLVELLVQQAELDATNGGSVSGN
LDGGNSNESQPLNVPPTDALLVRGKAIENVMYSYMLGDTVYFIVTWKGSK
WGEAVPVQEIKHVHPKLLIDYIKSLKLQD*
RE13279.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19212-PA | 79 | GG19212-PA | 1..79 | 103..179 | 196 | 54.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-PA | 179 | CG14193-PA | 1..179 | 1..179 | 934 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM22943-PA | 205 | GM22943-PA | 35..100 | 48..110 | 162 | 57.6 | Plus |
Dsec\GM22942-PA | 205 | GM22942-PA | 35..100 | 48..110 | 155 | 56.1 | Plus |
Dsec\GM22948-PA | 127 | GM22948-PA | 1..83 | 1..96 | 145 | 49 | Plus |
Dsec\GM24680-PA | 232 | GM24680-PA | 1..83 | 1..96 | 141 | 49 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD24868-PA | 385 | GD24868-PA | 1..108 | 1..114 | 237 | 52.9 | Plus |
Dsim\GD24869-PA | 264 | GD24869-PA | 1..96 | 1..109 | 227 | 52.3 | Plus |
Dsim\GD17430-PA | 177 | GD17430-PA | 1..83 | 1..96 | 210 | 52.1 | Plus |
Dsim\GD25140-PA | 151 | GD25140-PA | 1..107 | 1..114 | 203 | 48.8 | Plus |
RE13279.hyp Sequence
Translation from 62 to 601
> RE13279.hyp
MADKENSPNNKNTGGFPAEEEKQKENDQQKENDQQKENDQQEEVQEEPTK
DESKEAGSTPPPKHMGVHNSARAELARLLVELLVQQAELDATNGGSVSGN
LDGGNSNESQPLNVPPTDALLVRGKAIENVMYSYMLGDTVYFIVTWKGSK
WGEAVPVQEIKHVHPKLLIDYIKSLKLQD*
RE13279.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1D3csd-PA | 179 | CG14193-PA | 1..179 | 1..179 | 934 | 100 | Plus |