Clone RE13502 Report

Search the DGRC for RE13502

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:135
Well:2
Vector:pFlc-1
Associated Gene/TranscriptCG18417-RA
Protein status:RE13502.pep: gold
Preliminary Size:1204
Sequenced Size:1498

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18417 2001-12-14 Blastp of sequenced clone
CG18417 2002-01-01 Sim4 clustering to Release 2
CG18417 2003-01-01 Sim4 clustering to Release 3
CG18417 2008-04-29 Release 5.5 accounting
CG18417 2008-08-15 Release 5.9 accounting
CG18417 2008-12-18 5.12 accounting

Clone Sequence Records

RE13502.complete Sequence

1498 bp (1498 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071045

> RE13502.complete
AGGGATCGAATTTGAAAGATGACAGTTGTTTGGGTCATTCTGGCACTAAG
CTGCCTGAGCTTGTCAGCTGGACTGCAGAGAACCAATAAATACGAAGGTT
ATAAAATCTATGAGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAA
GCTCTGTCCGAACTGGTCAAGAATGCGTCATATTATGAGGTGTTCTCGGA
ATTGAATGCTGGTAATCCAGGCAAGATTATGGTGCATCCTCACGAACAGG
TGAACTTTGTGCAGCTGATGGAGGAGAATAATGTGAAGTATGATATTATC
AACCGAAATGTGGGTCTTACTCTGAGCCGTCAATTCGAAACGAACCGGAT
GTTACGACATTGGTTTCCCTACAATGGAAGATTGGGCACTGAGAGATACT
ACAACCATGAGGAGATCAACCAGTTCATTGAGGATTTGGCTGGGGAACAT
CCGCGTAGGGTTTTCCTAAAAACCGTAGGCAGAAGTTACGAAGGTCGCTG
GCTGAAAACCATCACAATCACCAATGGCGATGCCAGGCGCAATAAGAATG
TGATCCTCGTAGATGGTGGCTTCCATGCACGAGAATGGATCTCACCGGCA
GCTGCTACTTATCTGATTAACCAGCTGGTGTATAATCTCGAAGATAATGC
GGATCTTCTGCTGGACTTCGATTGGGTGATCCTCCCTGTGGTCAATCCCG
ATGGCTATGAGTACACCCAGTTATCGGAGGATACTCGCATGTGGCGCAAA
ACCAGGAAACCCAGCAGTTCGGATTGCATTGGCACCGATCCCAACCGTAA
CTTTGACTTCCACTGGAACGAGGAGGGTGCCTCGGATGATCCCTGTGATA
ACATATATGCTGGTGCAAAGCCTTTTTCAGAACCAGAGGCTCTGGTCGTT
GGGGATCTCATCCATAGCTATGTGGACCGCGGACAGATGTATTTGACTTT
GCATTCGTATGGATCACTTATTCTGTATCCTTGGGGTTGGACGGCAGCTG
TTCCCGACACAGAAGAGGATCTGCATGAGGTTGCTGCAGCAGGTCAAAGT
GCCATTCAGGAGGCCACTGGCACTATCTATAAGATTGGACCCTCTGCCAC
AACCATTAATTATGCGGCATCCGGAGCTAGCGATGATTATGCCTTCAATG
CTGGCTTCCCCATATCATTCACCATGGAACTGCCCTTCGGTGGTACAGGA
TTCGATCCTCCGGCATCGGATATAGATAGCATAGTCAAGGAGACCTGGGT
GGGCATTGCGGCCATGGCCCGGAAAGTAATACAAAAGTATCCGCTTGCAT
AATCGTGAATACTATGCCAACAAAGTGTTTCGATTATTCAGTTTATTGAT
TTCCGGACCATTATAAACTAAACCGGGAGAACGTCGGTTCGATAGCATGT
TTGTGCTATCTAAACGATAAAGTCTTTGGTTATTTTTGCAAATAAATGAA
GAGCATTAAACTGTATTTTTGTTAAAAAAAAAGAAAAAAAAAAAAAAA

RE13502.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-RA 1635 CG18417-RA 79..1554 1..1476 7380 100 Plus
CG8562-RA 1550 CG8562-RA 562..662 502..602 235 82.1 Plus
CG8562-RA 1550 CG8562-RA 713..780 653..720 175 83.8 Plus
CG8562-RA 1550 CG8562-RA 856..902 787..833 160 89.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7392339..7393236 98..995 4460 99.8 Plus
chr3L 24539361 chr3L 7393304..7393784 996..1476 2405 100 Plus
chr3L 24539361 chr3L 7392184..7392289 1..106 500 98.1 Plus
chr3L 24539361 chr3L 7390973..7391191 502..720 300 75.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7400229..7401126 98..995 4490 100 Plus
3L 28110227 3L 7401194..7401674 996..1476 2405 100 Plus
3L 28110227 3L 7400077..7400182 1..106 515 99.1 Plus
3L 28110227 3L 7398864..7399082 502..720 300 75.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7393329..7394226 98..995 4490 100 Plus
3L 28103327 3L 7394294..7394774 996..1476 2405 100 Plus
3L 28103327 3L 7393177..7393282 1..106 515 99 Plus
3L 28103327 3L 7391964..7392064 502..602 235 82.1 Plus
3L 28103327 3L 7392115..7392182 653..720 175 83.8 Plus
3L 28103327 3L 7392258..7392304 787..833 160 89.3 Plus
Blast to na_te.dros performed on 2019-03-16 20:55:50 has no hits.

RE13502.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:56:42 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7392184..7392281 1..98 98 -> Plus
chr3L 7392340..7393236 99..995 99 -> Plus
chr3L 7393304..7393784 996..1476 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:26 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 1..1284 19..1302 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:09:54 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 1..1284 19..1302 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:26 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 1..1284 19..1302 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:05 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 1..1284 19..1302 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:47 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 1..1284 19..1302 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:33 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 1..1476 1..1476 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:09:54 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 1..1476 1..1476 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:26 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 8..1480 1..1473 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:06 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 1..1476 1..1476 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:47 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 8..1480 1..1473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:42 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7400077..7400174 1..98 100 -> Plus
3L 7400230..7401126 99..995 100 -> Plus
3L 7401194..7401674 996..1476 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:42 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7400077..7400174 1..98 100 -> Plus
3L 7400230..7401126 99..995 100 -> Plus
3L 7401194..7401674 996..1476 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:42 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7400077..7400174 1..98 100 -> Plus
3L 7400230..7401126 99..995 100 -> Plus
3L 7401194..7401674 996..1476 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:26 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7393177..7393274 1..98 100 -> Plus
arm_3L 7393330..7394226 99..995 100 -> Plus
arm_3L 7394294..7394774 996..1476 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:14 Download gff for RE13502.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7393330..7394226 99..995 100 -> Plus
3L 7394294..7394774 996..1476 100   Plus
3L 7393177..7393274 1..98 100 -> Plus

RE13502.pep Sequence

Translation from 18 to 1301

> RE13502.pep
MTVVWVILALSCLSLSAGLQRTNKYEGYKIYEVSSEARSVAFSEALSELV
KNASYYEVFSELNAGNPGKIMVHPHEQVNFVQLMEENNVKYDIINRNVGL
TLSRQFETNRMLRHWFPYNGRLGTERYYNHEEINQFIEDLAGEHPRRVFL
KTVGRSYEGRWLKTITITNGDARRNKNVILVDGGFHAREWISPAAATYLI
NQLVYNLEDNADLLLDFDWVILPVVNPDGYEYTQLSEDTRMWRKTRKPSS
SDCIGTDPNRNFDFHWNEEGASDDPCDNIYAGAKPFSEPEALVVGDLIHS
YVDRGQMYLTLHSYGSLILYPWGWTAAVPDTEEDLHEVAAAGQSAIQEAT
GTIYKIGPSATTINYAASGASDDYAFNAGFPISFTMELPFGGTGFDPPAS
DIDSIVKETWVGIAAMARKVIQKYPLA*

RE13502.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10643-PA 428 GF10643-PA 1..428 1..427 1764 74.8 Plus
Dana\GF10642-PA 425 GF10642-PA 24..425 25..424 1103 52.9 Plus
Dana\GF23789-PA 417 GF23789-PA 19..417 23..424 1000 48.4 Plus
Dana\GF10641-PA 357 GF10641-PA 1..356 71..425 793 46.8 Plus
Dana\GF23784-PA 375 GF23784-PA 46..355 121..425 624 41.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14425-PA 427 GG14425-PA 1..427 1..427 2035 87.6 Plus
Dere\GG14424-PA 424 GG14424-PA 23..424 25..424 1117 54.3 Plus
Dere\GG14964-PA 418 GG14964-PA 19..418 23..424 1033 50.5 Plus
Dere\GG14423-PA 425 GG14423-PA 25..424 25..425 827 43.1 Plus
Dere\GG16151-PA 365 GG16151-PA 31..353 127..425 656 44 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14883-PA 424 GH14883-PA 4..423 3..426 1483 64.5 Plus
Dgri\GH14882-PA 423 GH14882-PA 22..423 25..424 1162 56.4 Plus
Dgri\GH16615-PA 418 GH16615-PA 1..418 1..424 1003 49 Plus
Dgri\GH14881-PA 431 GH14881-PA 27..427 25..424 740 39.9 Plus
Dgri\GH16610-PA 383 GH16610-PA 37..344 121..425 708 43.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-PA 427 CG18417-PA 1..427 1..427 2268 100 Plus
CG8562-PA 424 CG8562-PA 5..424 8..424 1129 54.1 Plus
CG8560-PB 418 CG8560-PB 7..418 6..424 1032 49.3 Plus
CG8560-PA 418 CG8560-PA 7..418 6..424 1032 49.3 Plus
CG32379-PB 344 CG32379-PB 44..343 127..425 787 51.8 Plus
CG8539-PB 385 CG8539-PB 33..341 122..425 641 43.7 Plus
CG8539-PA 385 CG8539-PA 33..341 122..425 641 43.7 Plus
CG4017-PA 424 CG4017-PA 4..417 6..422 622 35.4 Plus
CG17633-PA 430 CG17633-PA 7..423 6..420 575 35.1 Plus
CG7025-PA 429 CG7025-PA 8..416 6..419 567 35.9 Plus
CG18585-PB 422 CG18585-PB 1..415 1..419 548 33.3 Plus
CG18585-PA 422 CG18585-PA 1..415 1..419 548 33.3 Plus
CG3108-PA 1132 CG3108-PA 815..1114 121..422 548 40.7 Plus
CG14820-PA 416 CG14820-PA 5..413 6..420 513 31.1 Plus
CG2915-PA 453 CG2915-PA 54..449 24..423 504 32.4 Plus
CG2915-PB 453 CG2915-PB 54..449 24..423 504 32.4 Plus
CG8563-PB 440 CG8563-PB 135..437 108..420 500 37.3 Plus
CG8563-PA 440 CG8563-PA 135..437 108..420 500 37.3 Plus
CG3097-PA 445 CG3097-PA 148..439 127..420 488 36.5 Plus
CG12374-PA 422 CG12374-PA 3..418 1..423 482 30.1 Plus
CG4408-PB 467 CG4408-PB 68..425 24..388 464 34.7 Plus
CG4408-PA 479 CG4408-PA 80..437 24..388 464 34.7 Plus
CG8564-PA 504 CG8564-PA 38..361 127..419 418 30.5 Plus
CG8564-PC 520 CG8564-PC 54..377 127..419 418 30.5 Plus
CG8945-PC 1430 CG8945-PC 1026..1426 70..416 411 27.5 Plus
CG42264-PB 521 CG42264-PB 214..458 126..359 359 32.5 Plus
CG42264-PA 634 CG42264-PA 327..571 126..359 359 32.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12859-PA 423 GI12859-PA 1..422 1..426 1404 61.2 Plus
Dmoj\GI12855-PA 396 GI12855-PA 1..395 30..426 1397 67.1 Plus
Dmoj\GI12857-PA 402 GI12857-PA 1..396 30..427 1369 65.2 Plus
Dmoj\GI12856-PA 423 GI12856-PA 22..423 25..424 1166 55.9 Plus
Dmoj\GI12460-PA 419 GI12460-PA 3..419 1..424 987 49.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26418-PA 424 GL26418-PA 1..424 1..427 1741 74.8 Plus
Dper\GL24275-PA 418 GL24275-PA 1..418 1..424 938 46.2 Plus
Dper\GL26385-PA 426 GL26385-PA 24..425 25..425 825 42.5 Plus
Dper\GL24220-PA 371 GL24220-PA 26..328 127..425 678 46.1 Plus
Dper\GL26407-PA 202 GL26407-PA 4..202 229..424 629 60.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14928-PA 424 GA14928-PA 1..424 1..427 1736 74.8 Plus
Dpse\GA21165-PA 425 GA21165-PA 24..425 25..424 1117 54.3 Plus
Dpse\GA21163-PA 418 GA21163-PA 1..418 1..424 978 47.3 Plus
Dpse\GA16855-PA 426 GA16855-PA 24..425 25..425 823 42.3 Plus
Dpse\GA21147-PA 379 GA21147-PA 29..336 122..425 681 45.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14842-PA 336 GM14842-PA 62..336 153..427 1451 97.8 Plus
Dsec\GM14841-PA 424 GM14841-PA 5..424 8..424 1147 54.5 Plus
Dsec\GM13761-PA 418 GM13761-PA 7..418 6..424 1042 49.5 Plus
Dsec\GM14840-PA 390 GM14840-PA 25..389 25..425 700 39 Plus
Dsec\GM13753-PA 380 GM13753-PA 33..341 122..425 656 44.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14015-PA 427 GD14015-PA 1..427 1..427 2180 94.4 Plus
Dsim\GD14014-PA 424 GD14014-PA 5..424 8..424 1132 53.6 Plus
Dsim\GD13057-PA 418 GD13057-PA 8..418 7..424 1045 49.9 Plus
Dsim\GD14013-PA 425 GD14013-PA 25..424 25..425 820 42.7 Plus
Dsim\GD23628-PA 424 GD23628-PA 1..417 1..422 621 35.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13000-PA 424 GJ13000-PA 1..423 1..426 1502 67 Plus
Dvir\GJ12999-PA 423 GJ12999-PA 22..423 25..424 1163 56.4 Plus
Dvir\GJ12363-PA 419 GJ12363-PA 22..395 25..396 1034 54.2 Plus
Dvir\GJ12361-PA 419 GJ12361-PA 22..419 25..424 1015 51.1 Plus
Dvir\GJ12998-PA 428 GJ12998-PA 16..424 17..424 807 42.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17382-PA 426 GK17382-PA 8..426 3..427 1474 66.3 Plus
Dwil\GK17381-PA 422 GK17381-PA 5..422 8..424 1149 53.8 Plus
Dwil\GK16806-PA 418 GK16806-PA 19..418 23..424 1001 50.2 Plus
Dwil\GK17380-PA 436 GK17380-PA 33..430 25..425 807 44.4 Plus
Dwil\GK16802-PA 361 GK16802-PA 34..338 121..426 742 49 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21616-PA 427 GE21616-PA 1..427 1..427 2055 88.3 Plus
Dyak\GE21615-PA 424 GE21615-PA 5..424 8..424 1122 53.4 Plus
Dyak\GE20414-PA 418 GE20414-PA 7..418 6..424 1046 50.2 Plus
Dyak\GE21614-PA 418 GE21614-PA 67..417 69..425 796 46.3 Plus
Dyak\GE20406-PA 384 GE20406-PA 31..340 121..425 646 42.8 Plus

RE13502.hyp Sequence

Translation from 18 to 1301

> RE13502.hyp
MTVVWVILALSCLSLSAGLQRTNKYEGYKIYEVSSEARSVAFSEALSELV
KNASYYEVFSELNAGNPGKIMVHPHEQVNFVQLMEENNVKYDIINRNVGL
TLSRQFETNRMLRHWFPYNGRLGTERYYNHEEINQFIEDLAGEHPRRVFL
KTVGRSYEGRWLKTITITNGDARRNKNVILVDGGFHAREWISPAAATYLI
NQLVYNLEDNADLLLDFDWVILPVVNPDGYEYTQLSEDTRMWRKTRKPSS
SDCIGTDPNRNFDFHWNEEGASDDPCDNIYAGAKPFSEPEALVVGDLIHS
YVDRGQMYLTLHSYGSLILYPWGWTAAVPDTEEDLHEVAAAGQSAIQEAT
GTIYKIGPSATTINYAASGASDDYAFNAGFPISFTMELPFGGTGFDPPAS
DIDSIVKETWVGIAAMARKVIQKYPLA*

RE13502.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-PA 427 CG18417-PA 1..427 1..427 2268 100 Plus
CG8562-PA 424 CG8562-PA 5..424 8..424 1129 54.1 Plus
CG8560-PB 418 CG8560-PB 7..418 6..424 1032 49.3 Plus
CG8560-PA 418 CG8560-PA 7..418 6..424 1032 49.3 Plus
CG32379-PB 344 CG32379-PB 44..343 127..425 787 51.8 Plus