BDGP Sequence Production Resources |
Search the DGRC for RE13502
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 135 |
Well: | 2 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG18417-RA |
Protein status: | RE13502.pep: gold |
Preliminary Size: | 1204 |
Sequenced Size: | 1498 |
Gene | Date | Evidence |
---|---|---|
CG18417 | 2001-12-14 | Blastp of sequenced clone |
CG18417 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18417 | 2003-01-01 | Sim4 clustering to Release 3 |
CG18417 | 2008-04-29 | Release 5.5 accounting |
CG18417 | 2008-08-15 | Release 5.9 accounting |
CG18417 | 2008-12-18 | 5.12 accounting |
1498 bp (1498 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071045
> RE13502.complete AGGGATCGAATTTGAAAGATGACAGTTGTTTGGGTCATTCTGGCACTAAG CTGCCTGAGCTTGTCAGCTGGACTGCAGAGAACCAATAAATACGAAGGTT ATAAAATCTATGAGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAA GCTCTGTCCGAACTGGTCAAGAATGCGTCATATTATGAGGTGTTCTCGGA ATTGAATGCTGGTAATCCAGGCAAGATTATGGTGCATCCTCACGAACAGG TGAACTTTGTGCAGCTGATGGAGGAGAATAATGTGAAGTATGATATTATC AACCGAAATGTGGGTCTTACTCTGAGCCGTCAATTCGAAACGAACCGGAT GTTACGACATTGGTTTCCCTACAATGGAAGATTGGGCACTGAGAGATACT ACAACCATGAGGAGATCAACCAGTTCATTGAGGATTTGGCTGGGGAACAT CCGCGTAGGGTTTTCCTAAAAACCGTAGGCAGAAGTTACGAAGGTCGCTG GCTGAAAACCATCACAATCACCAATGGCGATGCCAGGCGCAATAAGAATG TGATCCTCGTAGATGGTGGCTTCCATGCACGAGAATGGATCTCACCGGCA GCTGCTACTTATCTGATTAACCAGCTGGTGTATAATCTCGAAGATAATGC GGATCTTCTGCTGGACTTCGATTGGGTGATCCTCCCTGTGGTCAATCCCG ATGGCTATGAGTACACCCAGTTATCGGAGGATACTCGCATGTGGCGCAAA ACCAGGAAACCCAGCAGTTCGGATTGCATTGGCACCGATCCCAACCGTAA CTTTGACTTCCACTGGAACGAGGAGGGTGCCTCGGATGATCCCTGTGATA ACATATATGCTGGTGCAAAGCCTTTTTCAGAACCAGAGGCTCTGGTCGTT GGGGATCTCATCCATAGCTATGTGGACCGCGGACAGATGTATTTGACTTT GCATTCGTATGGATCACTTATTCTGTATCCTTGGGGTTGGACGGCAGCTG TTCCCGACACAGAAGAGGATCTGCATGAGGTTGCTGCAGCAGGTCAAAGT GCCATTCAGGAGGCCACTGGCACTATCTATAAGATTGGACCCTCTGCCAC AACCATTAATTATGCGGCATCCGGAGCTAGCGATGATTATGCCTTCAATG CTGGCTTCCCCATATCATTCACCATGGAACTGCCCTTCGGTGGTACAGGA TTCGATCCTCCGGCATCGGATATAGATAGCATAGTCAAGGAGACCTGGGT GGGCATTGCGGCCATGGCCCGGAAAGTAATACAAAAGTATCCGCTTGCAT AATCGTGAATACTATGCCAACAAAGTGTTTCGATTATTCAGTTTATTGAT TTCCGGACCATTATAAACTAAACCGGGAGAACGTCGGTTCGATAGCATGT TTGTGCTATCTAAACGATAAAGTCTTTGGTTATTTTTGCAAATAAATGAA GAGCATTAAACTGTATTTTTGTTAAAAAAAAAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18417-RA | 1635 | CG18417-RA | 79..1554 | 1..1476 | 7380 | 100 | Plus |
CG8562-RA | 1550 | CG8562-RA | 562..662 | 502..602 | 235 | 82.1 | Plus |
CG8562-RA | 1550 | CG8562-RA | 713..780 | 653..720 | 175 | 83.8 | Plus |
CG8562-RA | 1550 | CG8562-RA | 856..902 | 787..833 | 160 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 7392339..7393236 | 98..995 | 4460 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 7393304..7393784 | 996..1476 | 2405 | 100 | Plus |
chr3L | 24539361 | chr3L | 7392184..7392289 | 1..106 | 500 | 98.1 | Plus |
chr3L | 24539361 | chr3L | 7390973..7391191 | 502..720 | 300 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 7400229..7401126 | 98..995 | 4490 | 100 | Plus |
3L | 28110227 | 3L | 7401194..7401674 | 996..1476 | 2405 | 100 | Plus |
3L | 28110227 | 3L | 7400077..7400182 | 1..106 | 515 | 99.1 | Plus |
3L | 28110227 | 3L | 7398864..7399082 | 502..720 | 300 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 7393329..7394226 | 98..995 | 4490 | 100 | Plus |
3L | 28103327 | 3L | 7394294..7394774 | 996..1476 | 2405 | 100 | Plus |
3L | 28103327 | 3L | 7393177..7393282 | 1..106 | 515 | 99 | Plus |
3L | 28103327 | 3L | 7391964..7392064 | 502..602 | 235 | 82.1 | Plus |
3L | 28103327 | 3L | 7392115..7392182 | 653..720 | 175 | 83.8 | Plus |
3L | 28103327 | 3L | 7392258..7392304 | 787..833 | 160 | 89.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7392184..7392281 | 1..98 | 98 | -> | Plus |
chr3L | 7392340..7393236 | 99..995 | 99 | -> | Plus |
chr3L | 7393304..7393784 | 996..1476 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18417-RA | 1..1284 | 19..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18417-RA | 1..1284 | 19..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18417-RA | 1..1284 | 19..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18417-RA | 1..1284 | 19..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18417-RA | 1..1284 | 19..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18417-RA | 1..1476 | 1..1476 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18417-RA | 1..1476 | 1..1476 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18417-RA | 8..1480 | 1..1473 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18417-RA | 1..1476 | 1..1476 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18417-RA | 8..1480 | 1..1473 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7400077..7400174 | 1..98 | 100 | -> | Plus |
3L | 7400230..7401126 | 99..995 | 100 | -> | Plus |
3L | 7401194..7401674 | 996..1476 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7400077..7400174 | 1..98 | 100 | -> | Plus |
3L | 7400230..7401126 | 99..995 | 100 | -> | Plus |
3L | 7401194..7401674 | 996..1476 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7400077..7400174 | 1..98 | 100 | -> | Plus |
3L | 7400230..7401126 | 99..995 | 100 | -> | Plus |
3L | 7401194..7401674 | 996..1476 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7393177..7393274 | 1..98 | 100 | -> | Plus |
arm_3L | 7393330..7394226 | 99..995 | 100 | -> | Plus |
arm_3L | 7394294..7394774 | 996..1476 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7393330..7394226 | 99..995 | 100 | -> | Plus |
3L | 7394294..7394774 | 996..1476 | 100 | Plus | |
3L | 7393177..7393274 | 1..98 | 100 | -> | Plus |
Translation from 18 to 1301
> RE13502.pep MTVVWVILALSCLSLSAGLQRTNKYEGYKIYEVSSEARSVAFSEALSELV KNASYYEVFSELNAGNPGKIMVHPHEQVNFVQLMEENNVKYDIINRNVGL TLSRQFETNRMLRHWFPYNGRLGTERYYNHEEINQFIEDLAGEHPRRVFL KTVGRSYEGRWLKTITITNGDARRNKNVILVDGGFHAREWISPAAATYLI NQLVYNLEDNADLLLDFDWVILPVVNPDGYEYTQLSEDTRMWRKTRKPSS SDCIGTDPNRNFDFHWNEEGASDDPCDNIYAGAKPFSEPEALVVGDLIHS YVDRGQMYLTLHSYGSLILYPWGWTAAVPDTEEDLHEVAAAGQSAIQEAT GTIYKIGPSATTINYAASGASDDYAFNAGFPISFTMELPFGGTGFDPPAS DIDSIVKETWVGIAAMARKVIQKYPLA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10643-PA | 428 | GF10643-PA | 1..428 | 1..427 | 1764 | 74.8 | Plus |
Dana\GF10642-PA | 425 | GF10642-PA | 24..425 | 25..424 | 1103 | 52.9 | Plus |
Dana\GF23789-PA | 417 | GF23789-PA | 19..417 | 23..424 | 1000 | 48.4 | Plus |
Dana\GF10641-PA | 357 | GF10641-PA | 1..356 | 71..425 | 793 | 46.8 | Plus |
Dana\GF23784-PA | 375 | GF23784-PA | 46..355 | 121..425 | 624 | 41.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14425-PA | 427 | GG14425-PA | 1..427 | 1..427 | 2035 | 87.6 | Plus |
Dere\GG14424-PA | 424 | GG14424-PA | 23..424 | 25..424 | 1117 | 54.3 | Plus |
Dere\GG14964-PA | 418 | GG14964-PA | 19..418 | 23..424 | 1033 | 50.5 | Plus |
Dere\GG14423-PA | 425 | GG14423-PA | 25..424 | 25..425 | 827 | 43.1 | Plus |
Dere\GG16151-PA | 365 | GG16151-PA | 31..353 | 127..425 | 656 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14883-PA | 424 | GH14883-PA | 4..423 | 3..426 | 1483 | 64.5 | Plus |
Dgri\GH14882-PA | 423 | GH14882-PA | 22..423 | 25..424 | 1162 | 56.4 | Plus |
Dgri\GH16615-PA | 418 | GH16615-PA | 1..418 | 1..424 | 1003 | 49 | Plus |
Dgri\GH14881-PA | 431 | GH14881-PA | 27..427 | 25..424 | 740 | 39.9 | Plus |
Dgri\GH16610-PA | 383 | GH16610-PA | 37..344 | 121..425 | 708 | 43.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18417-PA | 427 | CG18417-PA | 1..427 | 1..427 | 2268 | 100 | Plus |
CG8562-PA | 424 | CG8562-PA | 5..424 | 8..424 | 1129 | 54.1 | Plus |
CG8560-PB | 418 | CG8560-PB | 7..418 | 6..424 | 1032 | 49.3 | Plus |
CG8560-PA | 418 | CG8560-PA | 7..418 | 6..424 | 1032 | 49.3 | Plus |
CG32379-PB | 344 | CG32379-PB | 44..343 | 127..425 | 787 | 51.8 | Plus |
CG8539-PB | 385 | CG8539-PB | 33..341 | 122..425 | 641 | 43.7 | Plus |
CG8539-PA | 385 | CG8539-PA | 33..341 | 122..425 | 641 | 43.7 | Plus |
CG4017-PA | 424 | CG4017-PA | 4..417 | 6..422 | 622 | 35.4 | Plus |
CG17633-PA | 430 | CG17633-PA | 7..423 | 6..420 | 575 | 35.1 | Plus |
CG7025-PA | 429 | CG7025-PA | 8..416 | 6..419 | 567 | 35.9 | Plus |
CG18585-PB | 422 | CG18585-PB | 1..415 | 1..419 | 548 | 33.3 | Plus |
CG18585-PA | 422 | CG18585-PA | 1..415 | 1..419 | 548 | 33.3 | Plus |
CG3108-PA | 1132 | CG3108-PA | 815..1114 | 121..422 | 548 | 40.7 | Plus |
CG14820-PA | 416 | CG14820-PA | 5..413 | 6..420 | 513 | 31.1 | Plus |
CG2915-PA | 453 | CG2915-PA | 54..449 | 24..423 | 504 | 32.4 | Plus |
CG2915-PB | 453 | CG2915-PB | 54..449 | 24..423 | 504 | 32.4 | Plus |
CG8563-PB | 440 | CG8563-PB | 135..437 | 108..420 | 500 | 37.3 | Plus |
CG8563-PA | 440 | CG8563-PA | 135..437 | 108..420 | 500 | 37.3 | Plus |
CG3097-PA | 445 | CG3097-PA | 148..439 | 127..420 | 488 | 36.5 | Plus |
CG12374-PA | 422 | CG12374-PA | 3..418 | 1..423 | 482 | 30.1 | Plus |
CG4408-PB | 467 | CG4408-PB | 68..425 | 24..388 | 464 | 34.7 | Plus |
CG4408-PA | 479 | CG4408-PA | 80..437 | 24..388 | 464 | 34.7 | Plus |
CG8564-PA | 504 | CG8564-PA | 38..361 | 127..419 | 418 | 30.5 | Plus |
CG8564-PC | 520 | CG8564-PC | 54..377 | 127..419 | 418 | 30.5 | Plus |
CG8945-PC | 1430 | CG8945-PC | 1026..1426 | 70..416 | 411 | 27.5 | Plus |
CG42264-PB | 521 | CG42264-PB | 214..458 | 126..359 | 359 | 32.5 | Plus |
CG42264-PA | 634 | CG42264-PA | 327..571 | 126..359 | 359 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12859-PA | 423 | GI12859-PA | 1..422 | 1..426 | 1404 | 61.2 | Plus |
Dmoj\GI12855-PA | 396 | GI12855-PA | 1..395 | 30..426 | 1397 | 67.1 | Plus |
Dmoj\GI12857-PA | 402 | GI12857-PA | 1..396 | 30..427 | 1369 | 65.2 | Plus |
Dmoj\GI12856-PA | 423 | GI12856-PA | 22..423 | 25..424 | 1166 | 55.9 | Plus |
Dmoj\GI12460-PA | 419 | GI12460-PA | 3..419 | 1..424 | 987 | 49.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26418-PA | 424 | GL26418-PA | 1..424 | 1..427 | 1741 | 74.8 | Plus |
Dper\GL24275-PA | 418 | GL24275-PA | 1..418 | 1..424 | 938 | 46.2 | Plus |
Dper\GL26385-PA | 426 | GL26385-PA | 24..425 | 25..425 | 825 | 42.5 | Plus |
Dper\GL24220-PA | 371 | GL24220-PA | 26..328 | 127..425 | 678 | 46.1 | Plus |
Dper\GL26407-PA | 202 | GL26407-PA | 4..202 | 229..424 | 629 | 60.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14928-PA | 424 | GA14928-PA | 1..424 | 1..427 | 1736 | 74.8 | Plus |
Dpse\GA21165-PA | 425 | GA21165-PA | 24..425 | 25..424 | 1117 | 54.3 | Plus |
Dpse\GA21163-PA | 418 | GA21163-PA | 1..418 | 1..424 | 978 | 47.3 | Plus |
Dpse\GA16855-PA | 426 | GA16855-PA | 24..425 | 25..425 | 823 | 42.3 | Plus |
Dpse\GA21147-PA | 379 | GA21147-PA | 29..336 | 122..425 | 681 | 45.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14842-PA | 336 | GM14842-PA | 62..336 | 153..427 | 1451 | 97.8 | Plus |
Dsec\GM14841-PA | 424 | GM14841-PA | 5..424 | 8..424 | 1147 | 54.5 | Plus |
Dsec\GM13761-PA | 418 | GM13761-PA | 7..418 | 6..424 | 1042 | 49.5 | Plus |
Dsec\GM14840-PA | 390 | GM14840-PA | 25..389 | 25..425 | 700 | 39 | Plus |
Dsec\GM13753-PA | 380 | GM13753-PA | 33..341 | 122..425 | 656 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14015-PA | 427 | GD14015-PA | 1..427 | 1..427 | 2180 | 94.4 | Plus |
Dsim\GD14014-PA | 424 | GD14014-PA | 5..424 | 8..424 | 1132 | 53.6 | Plus |
Dsim\GD13057-PA | 418 | GD13057-PA | 8..418 | 7..424 | 1045 | 49.9 | Plus |
Dsim\GD14013-PA | 425 | GD14013-PA | 25..424 | 25..425 | 820 | 42.7 | Plus |
Dsim\GD23628-PA | 424 | GD23628-PA | 1..417 | 1..422 | 621 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13000-PA | 424 | GJ13000-PA | 1..423 | 1..426 | 1502 | 67 | Plus |
Dvir\GJ12999-PA | 423 | GJ12999-PA | 22..423 | 25..424 | 1163 | 56.4 | Plus |
Dvir\GJ12363-PA | 419 | GJ12363-PA | 22..395 | 25..396 | 1034 | 54.2 | Plus |
Dvir\GJ12361-PA | 419 | GJ12361-PA | 22..419 | 25..424 | 1015 | 51.1 | Plus |
Dvir\GJ12998-PA | 428 | GJ12998-PA | 16..424 | 17..424 | 807 | 42.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17382-PA | 426 | GK17382-PA | 8..426 | 3..427 | 1474 | 66.3 | Plus |
Dwil\GK17381-PA | 422 | GK17381-PA | 5..422 | 8..424 | 1149 | 53.8 | Plus |
Dwil\GK16806-PA | 418 | GK16806-PA | 19..418 | 23..424 | 1001 | 50.2 | Plus |
Dwil\GK17380-PA | 436 | GK17380-PA | 33..430 | 25..425 | 807 | 44.4 | Plus |
Dwil\GK16802-PA | 361 | GK16802-PA | 34..338 | 121..426 | 742 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21616-PA | 427 | GE21616-PA | 1..427 | 1..427 | 2055 | 88.3 | Plus |
Dyak\GE21615-PA | 424 | GE21615-PA | 5..424 | 8..424 | 1122 | 53.4 | Plus |
Dyak\GE20414-PA | 418 | GE20414-PA | 7..418 | 6..424 | 1046 | 50.2 | Plus |
Dyak\GE21614-PA | 418 | GE21614-PA | 67..417 | 69..425 | 796 | 46.3 | Plus |
Dyak\GE20406-PA | 384 | GE20406-PA | 31..340 | 121..425 | 646 | 42.8 | Plus |
Translation from 18 to 1301
> RE13502.hyp MTVVWVILALSCLSLSAGLQRTNKYEGYKIYEVSSEARSVAFSEALSELV KNASYYEVFSELNAGNPGKIMVHPHEQVNFVQLMEENNVKYDIINRNVGL TLSRQFETNRMLRHWFPYNGRLGTERYYNHEEINQFIEDLAGEHPRRVFL KTVGRSYEGRWLKTITITNGDARRNKNVILVDGGFHAREWISPAAATYLI NQLVYNLEDNADLLLDFDWVILPVVNPDGYEYTQLSEDTRMWRKTRKPSS SDCIGTDPNRNFDFHWNEEGASDDPCDNIYAGAKPFSEPEALVVGDLIHS YVDRGQMYLTLHSYGSLILYPWGWTAAVPDTEEDLHEVAAAGQSAIQEAT GTIYKIGPSATTINYAASGASDDYAFNAGFPISFTMELPFGGTGFDPPAS DIDSIVKETWVGIAAMARKVIQKYPLA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18417-PA | 427 | CG18417-PA | 1..427 | 1..427 | 2268 | 100 | Plus |
CG8562-PA | 424 | CG8562-PA | 5..424 | 8..424 | 1129 | 54.1 | Plus |
CG8560-PB | 418 | CG8560-PB | 7..418 | 6..424 | 1032 | 49.3 | Plus |
CG8560-PA | 418 | CG8560-PA | 7..418 | 6..424 | 1032 | 49.3 | Plus |
CG32379-PB | 344 | CG32379-PB | 44..343 | 127..425 | 787 | 51.8 | Plus |