BDGP Sequence Production Resources |
Search the DGRC for RE13534
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 135 |
Well: | 34 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Aven-RA |
Protein status: | RE13534.pep: gold |
Preliminary Size: | 885 |
Sequenced Size: | 1183 |
Gene | Date | Evidence |
---|---|---|
CG15727 | 2001-12-14 | Blastp of sequenced clone |
CG15727 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15727 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15727 | 2008-04-29 | Release 5.5 accounting |
CG15727 | 2008-08-15 | Release 5.9 accounting |
CG15727 | 2008-12-18 | 5.12 accounting |
1183 bp (1183 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071046
> RE13534.complete AGACTCGCGTCGCTGAACGAAGGAATAAACAAACCGATTTTGAATCGGAA TTACCAGATAAATAACACCCCGGAAACCACACAACCCCCATCAAAATGTC CGGCAAGGACGATCGATCCAAGGAAAAGCGCAGGAACATGAAGCAGTACA ATCATCACCATAAAAAGGATCAAGGGCGCTCCACCACATCGTCGGGATCG CCACCACCCACCTCCCGTCGCAGCATGGTTGATGTGGCGGACTCGAGCGA TGAGCCAAGGTTGGCCAGGCGTGGCAATTGGCAGTCCAGTGGAGCAGGCC GCTCATCGTTGGCACCGCAACGGAACAGGGACATGCTGGACACCCTGCCC AGCGACACCGACGATGTGGAGCAATTGGGCCTGGATGGTGCACCCATCGA TGAGAATGCCCGTGCCCAGTTACGAGCTGGCGATTTCCAGCAGCTGGCCC AGTTTCCCAGCCTCGGTGGCGGCCACTTCACCTTTGGGTCAGAGCGCGAA TGGGCCAACGTGGCCGAGGGCCAGACCAAGCTACACACCAAGGCTGCCAG TGCTTACTTCACCCTGAACCTCACCCGCCTAAATGTGGGTCTGCAAACGA TTCCGTTATACAAGCGTATGGATTATCCGGCGTCTTTGTTCACCCGCGCT CAGATTGCCGCCCAAGAGAAGGCCGCCGAACGGGCTGAGGCAGTTTACCA GCAGTGCATTCTGAAGGACGCCAATGGGGGCGCCAAGTCGCGAGCTCCCT CTGCTAAGTCCAATAAGGACGTTGCCCCTGCAGCGGCGGAAAAACCAATT GCTGCCTCAGCAGCTGAACCTGATGAACTTGACGAGCTATTGGCCATGAC CGATACGCAACTGGATATAGGCTCTGGAACCATTACGATGCCAATGCCTA TGGTGCAGCCGGCCACACCCTCATCGGCAGCAAGCAAAAACGGTGTGGAG GAATGGCTGGATTCCGTTTTGGATGAATAGTTACATAGTTCAGGAGGACT ATTACCAGAGCTTTTTACGCTTACACGAAATATTCAAATCACTAAGTGCT TGCATTTTTAGAAGTAGCATCATTAAAATTGCAAAATCTAGAGTTTTCCT CGTAACTTTATAGTTAAAGCTAGAGCCTTTTTATTGTGTATAATAAAATC GTTGATTGCATATATACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15727-RA | 1325 | CG15727-RA | 163..1325 | 3..1165 | 5815 | 100 | Plus |
CG15728-RA | 1190 | CG15728-RA | 1134..1190 | 1166..1110 | 285 | 100 | Minus |
CG15728.a | 1261 | CG15728.a | 1205..1261 | 1166..1110 | 285 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 12519324..12520366 | 125..1167 | 99 | <- | Minus |
chrX | 12520431..12520554 | 1..124 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15727-RA | 1..885 | 96..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15727-RA | 1..885 | 96..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aven-RA | 1..885 | 96..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15727-RA | 1..885 | 96..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aven-RA | 1..885 | 96..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15727-RA | 1..1165 | 1..1165 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15727-RA | 1..1165 | 1..1165 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aven-RA | 1..1165 | 1..1165 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15727-RA | 1..1165 | 1..1165 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aven-RA | 1..1165 | 1..1165 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12628368..12629410 | 125..1167 | 99 | <- | Minus |
X | 12629475..12629598 | 1..124 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12628368..12629410 | 125..1167 | 99 | <- | Minus |
X | 12629475..12629598 | 1..124 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12628368..12629410 | 125..1167 | 99 | <- | Minus |
X | 12629475..12629598 | 1..124 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 12522401..12523443 | 125..1167 | 99 | <- | Minus |
arm_X | 12523508..12523631 | 1..124 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12636466..12637508 | 125..1167 | 99 | <- | Minus |
X | 12637573..12637696 | 1..124 | 99 | Minus |
Translation from 95 to 979
> RE13534.pep MSGKDDRSKEKRRNMKQYNHHHKKDQGRSTTSSGSPPPTSRRSMVDVADS SDEPRLARRGNWQSSGAGRSSLAPQRNRDMLDTLPSDTDDVEQLGLDGAP IDENARAQLRAGDFQQLAQFPSLGGGHFTFGSEREWANVAEGQTKLHTKA ASAYFTLNLTRLNVGLQTIPLYKRMDYPASLFTRAQIAAQEKAAERAEAV YQQCILKDANGGAKSRAPSAKSNKDVAPAAAEKPIAASAAEPDELDELLA MTDTQLDIGSGTITMPMPMVQPATPSSAASKNGVEEWLDSVLDE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20895-PA | 304 | GF20895-PA | 1..304 | 1..294 | 995 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19543-PA | 299 | GG19543-PA | 1..299 | 1..294 | 1268 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24827-PA | 316 | GH24827-PA | 4..316 | 1..294 | 869 | 57.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Aven-PB | 294 | CG15727-PB | 1..294 | 1..294 | 1507 | 100 | Plus |
Aven-PA | 294 | CG15727-PA | 1..294 | 1..294 | 1507 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16157-PA | 290 | GI16157-PA | 1..290 | 1..294 | 877 | 60.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13152-PA | 165 | GL13152-PA | 1..162 | 1..153 | 527 | 67.9 | Plus |
Dper\GL13153-PA | 109 | GL13153-PA | 4..109 | 197..294 | 145 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13916-PA | 311 | GA13916-PA | 1..311 | 1..294 | 881 | 60.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11540-PA | 127 | GM11540-PA | 1..127 | 1..127 | 651 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15922-PA | 293 | GD15922-PA | 1..293 | 1..294 | 1416 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16651-PA | 299 | GJ16651-PA | 1..299 | 1..294 | 857 | 64 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25407-PA | 297 | GK25407-PA | 1..297 | 1..294 | 662 | 53.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16205-PA | 299 | GE16205-PA | 1..299 | 1..294 | 1261 | 91 | Plus |
Translation from 95 to 979
> RE13534.hyp MSGKDDRSKEKRRNMKQYNHHHKKDQGRSTTSSGSPPPTSRRSMVDVADS SDEPRLARRGNWQSSGAGRSSLAPQRNRDMLDTLPSDTDDVEQLGLDGAP IDENARAQLRAGDFQQLAQFPSLGGGHFTFGSEREWANVAEGQTKLHTKA ASAYFTLNLTRLNVGLQTIPLYKRMDYPASLFTRAQIAAQEKAAERAEAV YQQCILKDANGGAKSRAPSAKSNKDVAPAAAEKPIAASAAEPDELDELLA MTDTQLDIGSGTITMPMPMVQPATPSSAASKNGVEEWLDSVLDE*