Clone RE13534 Report

Search the DGRC for RE13534

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:135
Well:34
Vector:pFlc-1
Associated Gene/TranscriptAven-RA
Protein status:RE13534.pep: gold
Preliminary Size:885
Sequenced Size:1183

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15727 2001-12-14 Blastp of sequenced clone
CG15727 2002-01-01 Sim4 clustering to Release 2
CG15727 2003-01-01 Sim4 clustering to Release 3
CG15727 2008-04-29 Release 5.5 accounting
CG15727 2008-08-15 Release 5.9 accounting
CG15727 2008-12-18 5.12 accounting

Clone Sequence Records

RE13534.complete Sequence

1183 bp (1183 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071046

> RE13534.complete
AGACTCGCGTCGCTGAACGAAGGAATAAACAAACCGATTTTGAATCGGAA
TTACCAGATAAATAACACCCCGGAAACCACACAACCCCCATCAAAATGTC
CGGCAAGGACGATCGATCCAAGGAAAAGCGCAGGAACATGAAGCAGTACA
ATCATCACCATAAAAAGGATCAAGGGCGCTCCACCACATCGTCGGGATCG
CCACCACCCACCTCCCGTCGCAGCATGGTTGATGTGGCGGACTCGAGCGA
TGAGCCAAGGTTGGCCAGGCGTGGCAATTGGCAGTCCAGTGGAGCAGGCC
GCTCATCGTTGGCACCGCAACGGAACAGGGACATGCTGGACACCCTGCCC
AGCGACACCGACGATGTGGAGCAATTGGGCCTGGATGGTGCACCCATCGA
TGAGAATGCCCGTGCCCAGTTACGAGCTGGCGATTTCCAGCAGCTGGCCC
AGTTTCCCAGCCTCGGTGGCGGCCACTTCACCTTTGGGTCAGAGCGCGAA
TGGGCCAACGTGGCCGAGGGCCAGACCAAGCTACACACCAAGGCTGCCAG
TGCTTACTTCACCCTGAACCTCACCCGCCTAAATGTGGGTCTGCAAACGA
TTCCGTTATACAAGCGTATGGATTATCCGGCGTCTTTGTTCACCCGCGCT
CAGATTGCCGCCCAAGAGAAGGCCGCCGAACGGGCTGAGGCAGTTTACCA
GCAGTGCATTCTGAAGGACGCCAATGGGGGCGCCAAGTCGCGAGCTCCCT
CTGCTAAGTCCAATAAGGACGTTGCCCCTGCAGCGGCGGAAAAACCAATT
GCTGCCTCAGCAGCTGAACCTGATGAACTTGACGAGCTATTGGCCATGAC
CGATACGCAACTGGATATAGGCTCTGGAACCATTACGATGCCAATGCCTA
TGGTGCAGCCGGCCACACCCTCATCGGCAGCAAGCAAAAACGGTGTGGAG
GAATGGCTGGATTCCGTTTTGGATGAATAGTTACATAGTTCAGGAGGACT
ATTACCAGAGCTTTTTACGCTTACACGAAATATTCAAATCACTAAGTGCT
TGCATTTTTAGAAGTAGCATCATTAAAATTGCAAAATCTAGAGTTTTCCT
CGTAACTTTATAGTTAAAGCTAGAGCCTTTTTATTGTGTATAATAAAATC
GTTGATTGCATATATACAAAAAAAAAAAAAAAA

RE13534.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15727-RA 1325 CG15727-RA 163..1325 3..1165 5815 100 Plus
CG15728-RA 1190 CG15728-RA 1134..1190 1166..1110 285 100 Minus
CG15728.a 1261 CG15728.a 1205..1261 1166..1110 285 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12519325..12520366 1166..125 5195 99.9 Minus
chrX 22417052 chrX 12520431..12520552 124..3 595 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12628369..12629410 1166..125 5210 100 Minus
X 23542271 X 12629475..12629596 124..3 610 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12636467..12637508 1166..125 5210 100 Minus
X 23527363 X 12637573..12637694 124..3 610 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:18:06 has no hits.

RE13534.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:18:55 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12519324..12520366 125..1167 99 <- Minus
chrX 12520431..12520554 1..124 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:27 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
CG15727-RA 1..885 96..980 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:09:45 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
CG15727-RA 1..885 96..980 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:19 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
Aven-RA 1..885 96..980 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:54 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
CG15727-RA 1..885 96..980 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:17 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
Aven-RA 1..885 96..980 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:22 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
CG15727-RA 1..1165 1..1165 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:09:45 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
CG15727-RA 1..1165 1..1165 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:19 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
Aven-RA 1..1165 1..1165 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:55 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
CG15727-RA 1..1165 1..1165 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:17 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
Aven-RA 1..1165 1..1165 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:18:55 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
X 12628368..12629410 125..1167 99 <- Minus
X 12629475..12629598 1..124 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:18:55 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
X 12628368..12629410 125..1167 99 <- Minus
X 12629475..12629598 1..124 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:18:55 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
X 12628368..12629410 125..1167 99 <- Minus
X 12629475..12629598 1..124 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:19 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12522401..12523443 125..1167 99 <- Minus
arm_X 12523508..12523631 1..124 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:04 Download gff for RE13534.complete
Subject Subject Range Query Range Percent Splice Strand
X 12636466..12637508 125..1167 99 <- Minus
X 12637573..12637696 1..124 99   Minus

RE13534.pep Sequence

Translation from 95 to 979

> RE13534.pep
MSGKDDRSKEKRRNMKQYNHHHKKDQGRSTTSSGSPPPTSRRSMVDVADS
SDEPRLARRGNWQSSGAGRSSLAPQRNRDMLDTLPSDTDDVEQLGLDGAP
IDENARAQLRAGDFQQLAQFPSLGGGHFTFGSEREWANVAEGQTKLHTKA
ASAYFTLNLTRLNVGLQTIPLYKRMDYPASLFTRAQIAAQEKAAERAEAV
YQQCILKDANGGAKSRAPSAKSNKDVAPAAAEKPIAASAAEPDELDELLA
MTDTQLDIGSGTITMPMPMVQPATPSSAASKNGVEEWLDSVLDE*

RE13534.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20895-PA 304 GF20895-PA 1..304 1..294 995 71 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19543-PA 299 GG19543-PA 1..299 1..294 1268 90.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24827-PA 316 GH24827-PA 4..316 1..294 869 57.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Aven-PB 294 CG15727-PB 1..294 1..294 1507 100 Plus
Aven-PA 294 CG15727-PA 1..294 1..294 1507 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16157-PA 290 GI16157-PA 1..290 1..294 877 60.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13152-PA 165 GL13152-PA 1..162 1..153 527 67.9 Plus
Dper\GL13153-PA 109 GL13153-PA 4..109 197..294 145 40.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13916-PA 311 GA13916-PA 1..311 1..294 881 60.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11540-PA 127 GM11540-PA 1..127 1..127 651 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15922-PA 293 GD15922-PA 1..293 1..294 1416 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16651-PA 299 GJ16651-PA 1..299 1..294 857 64 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25407-PA 297 GK25407-PA 1..297 1..294 662 53.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16205-PA 299 GE16205-PA 1..299 1..294 1261 91 Plus

RE13534.hyp Sequence

Translation from 95 to 979

> RE13534.hyp
MSGKDDRSKEKRRNMKQYNHHHKKDQGRSTTSSGSPPPTSRRSMVDVADS
SDEPRLARRGNWQSSGAGRSSLAPQRNRDMLDTLPSDTDDVEQLGLDGAP
IDENARAQLRAGDFQQLAQFPSLGGGHFTFGSEREWANVAEGQTKLHTKA
ASAYFTLNLTRLNVGLQTIPLYKRMDYPASLFTRAQIAAQEKAAERAEAV
YQQCILKDANGGAKSRAPSAKSNKDVAPAAAEKPIAASAAEPDELDELLA
MTDTQLDIGSGTITMPMPMVQPATPSSAASKNGVEEWLDSVLDE*

RE13534.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
Aven-PB 294 CG15727-PB 1..294 1..294 1507 100 Plus
Aven-PA 294 CG15727-PA 1..294 1..294 1507 100 Plus