BDGP Sequence Production Resources |
Search the DGRC for RE13562
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 135 |
Well: | 62 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12125-RA |
Protein status: | RE13562.pep: gold |
Preliminary Size: | 2533 |
Sequenced Size: | 2768 |
Gene | Date | Evidence |
---|---|---|
CG12125 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12125 | 2002-04-22 | Blastp of sequenced clone |
CG12125 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12125 | 2008-04-29 | Release 5.5 accounting |
CG12125 | 2008-08-15 | Release 5.9 accounting |
CG12125 | 2008-12-18 | 5.12 accounting |
2768 bp (2768 high quality bases) assembled on 2002-04-22
GenBank Submission: AY113409
> RE13562.complete AATCAGCTGGATCTTTTGCCGCCGTGCTCTTCTCTTCGTAAAACGTTGTG ATGCAATTTTGTTGTTTTCATGTCTAAAAGTGAAAGTTGCCACTGATAAG AGGCAGTAGACTGAGACTCCGACGTAAAATTTATCCGTGGTGACCCCGTT TCGTGTCAGCCAGGCGACGAGGCCAGCGTTTGGACCAGCCCCCAACTGAA ACCAGCCGTTCTGCATCTGCATTCCAAAGGGCGGCCGCACATGGAGCGCA GGGTCAAAGCCGCGCCAGAAAACCAAAACCAAGATAGCACCCGCCGATGA GCGGGCATCGAGGAGTGGGCGCGGAGGTCTAACCTCAAAGCACAAGCACA ATCCGCAGCATCAGCACACAACGAATCCTTGCTATTCACACCATTCCCTA TCTCGATTCCGAAGTATTCACAGGATCCAAGGCGTAGTCATCATAGCCGC AGGATGCAGCGCGTCATGCCGGCGTCCTGGAGCAGCGGGGGCAGCCTGCT GCCCTTTCGCGTTTCCACCACCACAAAGGTTGTGCTCTTCTCACTGACCG CCGGCGTGGCCCTAATGAGCGTACTCTCCCGATTTCTGCGACGTCGCAAG CCACCGCGTCCGCCTCGTCGAGCCAGGAAGTACACGGGTCGGCGCAACCG CAACAGCATGCGCAGTCCAAACGATCTAATCTCGATAGCCGGATCTAAGG CCTCGGCCAGATCGGGGAGTCCTGTGGGCTCCACACTGGCCTACTCGGAT CGCCTGTCCATGGCGTCCGGCTCGATTGGCGTTGGTGTATTGGGCGTACA AAATGCCGGTCCTGGCAGCTCGGTAGTCACACAACTGACGGCCCAACAGT TGGGCATGATGGGCATGGAGGCACTGGACACAGTGATCAACTTCTGGGAG GATGCCCTGGCGGCACACTACTCGCCCGGCGGTTTGCCCGCCCTGTTGAC CACGGCGGAGGACTCCGAGTTCTGTCGCGAGATCCAAAACCTGCTGGAGA TGGCCTACACGCTGCAGGAGCAGAGCGAACTGCTCTTCCTGGACCAGCGA TCGGTGCTGTTCCGCGAGGAGCATTCCATTGACGAGGCCGAGGAGGAGGC GGGCGAGGCCGATGACGATCGGCGGTCACGCAAATCGGGCAGCGTTCTCA GTCGCGCTGGTTCCGACCCGAACTTTGATTCCGCGGAAAGCTTTGCTTCC GCTCTCGACCAGGTGGCGGATCTGCGTGAGTTCGATGGCTTTATTGAGAC CTCGTACGAAGAGTATCCGCTATTCCAGAGTGCACTGAAGCATCACGATG AGTACACGGTGCCGTGTCGTACCATTCGGGCGGAGTTGATGCACTGCAGC ACCGATACCGAATACCTGGCCAAGCTGCACTGCGTTCGGTTGGCCTTTCA GTTCCTCTTCAAGGATCCCGCTGTGGGCCAGTGGATCTGCGATGCTGGTC GGCAGATTCTCACCGATCTGCTTTGTCTGGGCGATAAGGATACCAAGGAG TTTCTTGTGGGCTACGAGGACATGGTGAACTATCTGCACGATAGCAACAA CTGGCCCTGCATCCAAATGGAGCTGGAGCAGCGCAATGTCAAGGCGATGA CCTTCTACGATATCTGTTTGGACTTCATTATCCTCGATTCGTTCAAGGAT CTTGATGCTCCGCCTGCCAGCGTAACAGCGGTTGTCCAAAATCGCTGGCT ATCCAACGGATTCAAAGAGACGGCATTAACAACAGCCGTGTGGTCGGTGC TGAAGGCAAAGAAACGGATGCTTAAGTTCCCCAACGGGTTCATGTCCCAC TTTTACGTGATATCCGAGCAGATATCACCGCTAATGGCCTGGGGCTTCTT TGGACCCAACGAGAACTTGCGAGACATCTGCCACTACTTCCGAGAGGAGC TGCTCGCCTTTCTGGGCGACATCTTTAGCTTCCAAAAGAGCCGCTTCACG ACCATCGAGGAATTCTCGCAGGATGTGCTGCAGCACATGCAGACGCGCGT CAACAACATTGGCGTGAAATTTAGCCAGTAACTGGCGTTCACTTTAGCTA GCCTTCTATCCATACTTCTTGGACTCCCCTTCTATATATTTTTTACAAAA ACCATTTGGTTCGGTAGTTTCCCTAAGAAATGCTCCACAAGTTGACTAAT TTTAAAGCCACATACATCCAGCCACACGTACACCAAATCCACGCATCGTC ATTGTATGAATAAGCTGCATTTAAGTCACCAAAACATTTGTAAAATAAAA CTGTTTACGCCCGCTCCGAGCGAGAATCCAGCTGAAATACCTCCGATTGC ATGGGTAAAGTGGATCCAGGTGACAGACGCGCTGCATACCCTGTTATACT ATGTTATTCAGTGATACATTTAGTACACACACTCAAATAACCACGCACAA ACTATACTAAATTTGAGAGTCAGACATGAACTAGTTATTTTATGACATTA AGACCATTGAAAGGAGTTGGCTGTTTTGTTGTTTAAATCCTACTAAACTG TAAAACTATATATTAGTTTAATAATCTGAGATTATTGATATAGACATGTA CTCTTAATGTTTCGATATTTTTCAAAACGATAACAAAATATTGCAGATAG GGAATCAGTTAAAATACTTCAGTTTTCCGACTAACGACCAATTGTTTTTT CCAGTGATGAATCTAAAAATTGAAGTAGTATCCCCCATAGAAATGATTTT TGTAAAATTATGAACTCTGAATTATGTGAAATATAGTGGTCAGATGCTGA GTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12125-RA | 2915 | CG12125-RA | 127..2885 | 1..2758 | 13725 | 99.8 | Plus |
CG12125.a | 2840 | CG12125.a | 127..2840 | 1..2713 | 13500 | 99.8 | Plus |
CG12125.b | 2807 | CG12125.b | 127..2807 | 1..2680 | 13335 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 8326760..8327956 | 1723..527 | 5970 | 99.9 | Minus |
chrX | 22417052 | chrX | 8325666..8326697 | 2752..1722 | 5095 | 99.8 | Minus |
chrX | 22417052 | chrX | 8328014..8328543 | 530..1 | 2650 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 8325666..8326696 | 1723..2752 | 99 | <- | Minus |
chrX | 8326761..8327954 | 529..1722 | 99 | <- | Minus |
chrX | 8328016..8328543 | 1..528 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12125-RB | 1..1578 | 454..2031 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12125-RB | 1..1578 | 454..2031 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12125-RA | 1..1578 | 454..2031 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12125-RA | 1..1578 | 454..2031 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12125-RA | 1..1578 | 454..2031 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12125-RA | 1..2753 | 1..2752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12125-RA | 1..2753 | 1..2752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12125-RA | 2..2754 | 1..2752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12125-RA | 1..2753 | 1..2752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12125-RA | 2..2754 | 1..2752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8433923..8434953 | 1723..2752 | 99 | <- | Minus |
X | 8435018..8436211 | 529..1722 | 99 | <- | Minus |
X | 8436273..8436800 | 1..528 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8433923..8434953 | 1723..2752 | 99 | <- | Minus |
X | 8435018..8436211 | 529..1722 | 99 | <- | Minus |
X | 8436273..8436800 | 1..528 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8433923..8434953 | 1723..2752 | 99 | <- | Minus |
X | 8435018..8436211 | 529..1722 | 99 | <- | Minus |
X | 8436273..8436800 | 1..528 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 8327956..8328986 | 1723..2752 | 99 | <- | Minus |
arm_X | 8329051..8330244 | 529..1722 | 99 | <- | Minus |
arm_X | 8330306..8330833 | 1..528 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8442021..8443051 | 1723..2752 | 99 | <- | Minus |
X | 8443116..8444309 | 529..1722 | 99 | <- | Minus |
X | 8444371..8444898 | 1..528 | 100 | Minus |
Translation from 453 to 2030
> RE13562.pep MQRVMPASWSSGGSLLPFRVSTTTKVVLFSLTAGVALMSVLSRFLRRRKP PRPPRRARKYTGRRNRNSMRSPNDLISIAGSKASARSGSPVGSTLAYSDR LSMASGSIGVGVLGVQNAGPGSSVVTQLTAQQLGMMGMEALDTVINFWED ALAAHYSPGGLPALLTTAEDSEFCREIQNLLEMAYTLQEQSELLFLDQRS VLFREEHSIDEAEEEAGEADDDRRSRKSGSVLSRAGSDPNFDSAESFASA LDQVADLREFDGFIETSYEEYPLFQSALKHHDEYTVPCRTIRAELMHCST DTEYLAKLHCVRLAFQFLFKDPAVGQWICDAGRQILTDLLCLGDKDTKEF LVGYEDMVNYLHDSNNWPCIQMELEQRNVKAMTFYDICLDFIILDSFKDL DAPPASVTAVVQNRWLSNGFKETALTTAVWSVLKAKKRMLKFPNGFMSHF YVISEQISPLMAWGFFGPNENLRDICHYFREELLAFLGDIFSFQKSRFTT IEEFSQDVLQHMQTRVNNIGVKFSQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21838-PA | 523 | GF21838-PA | 1..523 | 1..525 | 2601 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19053-PA | 521 | GG19053-PA | 1..521 | 1..525 | 2744 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24199-PA | 536 | GH24199-PA | 1..536 | 1..525 | 2361 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Miga-PC | 525 | CG12125-PC | 1..525 | 1..525 | 2717 | 100 | Plus |
Miga-PB | 525 | CG12125-PB | 1..525 | 1..525 | 2717 | 100 | Plus |
Miga-PA | 525 | CG12125-PA | 1..525 | 1..525 | 2717 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15883-PA | 527 | GI15883-PA | 9..527 | 12..525 | 2421 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16568-PA | 429 | GL16568-PA | 1..268 | 1..262 | 933 | 79.4 | Plus |
Dper\GL21203-PA | 120 | GL21203-PA | 23..114 | 109..200 | 182 | 46.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11419-PA | 530 | GA11419-PA | 1..530 | 1..525 | 2431 | 89.1 | Plus |
Dpse\GA28767-PA | 120 | GA28767-PA | 23..114 | 109..200 | 181 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21377-PA | 525 | GM21377-PA | 1..525 | 1..525 | 2817 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24570-PA | 525 | GD24570-PA | 1..525 | 1..525 | 2766 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18710-PA | 526 | GJ18710-PA | 1..526 | 1..525 | 2377 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24929-PA | 535 | GK24929-PA | 1..535 | 1..525 | 2466 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17457-PA | 525 | GE17457-PA | 1..525 | 1..525 | 2812 | 99 | Plus |
Translation from 453 to 2030
> RE13562.hyp MQRVMPASWSSGGSLLPFRVSTTTKVVLFSLTAGVALMSVLSRFLRRRKP PRPPRRARKYTGRRNRNSMRSPNDLISIAGSKASARSGSPVGSTLAYSDR LSMASGSIGVGVLGVQNAGPGSSVVTQLTAQQLGMMGMEALDTVINFWED ALAAHYSPGGLPALLTTAEDSEFCREIQNLLEMAYTLQEQSELLFLDQRS VLFREEHSIDEAEEEAGEADDDRRSRKSGSVLSRAGSDPNFDSAESFASA LDQVADLREFDGFIETSYEEYPLFQSALKHHDEYTVPCRTIRAELMHCST DTEYLAKLHCVRLAFQFLFKDPAVGQWICDAGRQILTDLLCLGDKDTKEF LVGYEDMVNYLHDSNNWPCIQMELEQRNVKAMTFYDICLDFIILDSFKDL DAPPASVTAVVQNRWLSNGFKETALTTAVWSVLKAKKRMLKFPNGFMSHF YVISEQISPLMAWGFFGPNENLRDICHYFREELLAFLGDIFSFQKSRFTT IEEFSQDVLQHMQTRVNNIGVKFSQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12125-PC | 525 | CG12125-PC | 1..525 | 1..525 | 2717 | 100 | Plus |
CG12125-PB | 525 | CG12125-PB | 1..525 | 1..525 | 2717 | 100 | Plus |
CG12125-PA | 525 | CG12125-PA | 1..525 | 1..525 | 2717 | 100 | Plus |