Clone RE13562 Report

Search the DGRC for RE13562

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:135
Well:62
Vector:pFlc-1
Associated Gene/TranscriptCG12125-RA
Protein status:RE13562.pep: gold
Preliminary Size:2533
Sequenced Size:2768

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12125 2002-01-01 Sim4 clustering to Release 2
CG12125 2002-04-22 Blastp of sequenced clone
CG12125 2003-01-01 Sim4 clustering to Release 3
CG12125 2008-04-29 Release 5.5 accounting
CG12125 2008-08-15 Release 5.9 accounting
CG12125 2008-12-18 5.12 accounting

Clone Sequence Records

RE13562.complete Sequence

2768 bp (2768 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113409

> RE13562.complete
AATCAGCTGGATCTTTTGCCGCCGTGCTCTTCTCTTCGTAAAACGTTGTG
ATGCAATTTTGTTGTTTTCATGTCTAAAAGTGAAAGTTGCCACTGATAAG
AGGCAGTAGACTGAGACTCCGACGTAAAATTTATCCGTGGTGACCCCGTT
TCGTGTCAGCCAGGCGACGAGGCCAGCGTTTGGACCAGCCCCCAACTGAA
ACCAGCCGTTCTGCATCTGCATTCCAAAGGGCGGCCGCACATGGAGCGCA
GGGTCAAAGCCGCGCCAGAAAACCAAAACCAAGATAGCACCCGCCGATGA
GCGGGCATCGAGGAGTGGGCGCGGAGGTCTAACCTCAAAGCACAAGCACA
ATCCGCAGCATCAGCACACAACGAATCCTTGCTATTCACACCATTCCCTA
TCTCGATTCCGAAGTATTCACAGGATCCAAGGCGTAGTCATCATAGCCGC
AGGATGCAGCGCGTCATGCCGGCGTCCTGGAGCAGCGGGGGCAGCCTGCT
GCCCTTTCGCGTTTCCACCACCACAAAGGTTGTGCTCTTCTCACTGACCG
CCGGCGTGGCCCTAATGAGCGTACTCTCCCGATTTCTGCGACGTCGCAAG
CCACCGCGTCCGCCTCGTCGAGCCAGGAAGTACACGGGTCGGCGCAACCG
CAACAGCATGCGCAGTCCAAACGATCTAATCTCGATAGCCGGATCTAAGG
CCTCGGCCAGATCGGGGAGTCCTGTGGGCTCCACACTGGCCTACTCGGAT
CGCCTGTCCATGGCGTCCGGCTCGATTGGCGTTGGTGTATTGGGCGTACA
AAATGCCGGTCCTGGCAGCTCGGTAGTCACACAACTGACGGCCCAACAGT
TGGGCATGATGGGCATGGAGGCACTGGACACAGTGATCAACTTCTGGGAG
GATGCCCTGGCGGCACACTACTCGCCCGGCGGTTTGCCCGCCCTGTTGAC
CACGGCGGAGGACTCCGAGTTCTGTCGCGAGATCCAAAACCTGCTGGAGA
TGGCCTACACGCTGCAGGAGCAGAGCGAACTGCTCTTCCTGGACCAGCGA
TCGGTGCTGTTCCGCGAGGAGCATTCCATTGACGAGGCCGAGGAGGAGGC
GGGCGAGGCCGATGACGATCGGCGGTCACGCAAATCGGGCAGCGTTCTCA
GTCGCGCTGGTTCCGACCCGAACTTTGATTCCGCGGAAAGCTTTGCTTCC
GCTCTCGACCAGGTGGCGGATCTGCGTGAGTTCGATGGCTTTATTGAGAC
CTCGTACGAAGAGTATCCGCTATTCCAGAGTGCACTGAAGCATCACGATG
AGTACACGGTGCCGTGTCGTACCATTCGGGCGGAGTTGATGCACTGCAGC
ACCGATACCGAATACCTGGCCAAGCTGCACTGCGTTCGGTTGGCCTTTCA
GTTCCTCTTCAAGGATCCCGCTGTGGGCCAGTGGATCTGCGATGCTGGTC
GGCAGATTCTCACCGATCTGCTTTGTCTGGGCGATAAGGATACCAAGGAG
TTTCTTGTGGGCTACGAGGACATGGTGAACTATCTGCACGATAGCAACAA
CTGGCCCTGCATCCAAATGGAGCTGGAGCAGCGCAATGTCAAGGCGATGA
CCTTCTACGATATCTGTTTGGACTTCATTATCCTCGATTCGTTCAAGGAT
CTTGATGCTCCGCCTGCCAGCGTAACAGCGGTTGTCCAAAATCGCTGGCT
ATCCAACGGATTCAAAGAGACGGCATTAACAACAGCCGTGTGGTCGGTGC
TGAAGGCAAAGAAACGGATGCTTAAGTTCCCCAACGGGTTCATGTCCCAC
TTTTACGTGATATCCGAGCAGATATCACCGCTAATGGCCTGGGGCTTCTT
TGGACCCAACGAGAACTTGCGAGACATCTGCCACTACTTCCGAGAGGAGC
TGCTCGCCTTTCTGGGCGACATCTTTAGCTTCCAAAAGAGCCGCTTCACG
ACCATCGAGGAATTCTCGCAGGATGTGCTGCAGCACATGCAGACGCGCGT
CAACAACATTGGCGTGAAATTTAGCCAGTAACTGGCGTTCACTTTAGCTA
GCCTTCTATCCATACTTCTTGGACTCCCCTTCTATATATTTTTTACAAAA
ACCATTTGGTTCGGTAGTTTCCCTAAGAAATGCTCCACAAGTTGACTAAT
TTTAAAGCCACATACATCCAGCCACACGTACACCAAATCCACGCATCGTC
ATTGTATGAATAAGCTGCATTTAAGTCACCAAAACATTTGTAAAATAAAA
CTGTTTACGCCCGCTCCGAGCGAGAATCCAGCTGAAATACCTCCGATTGC
ATGGGTAAAGTGGATCCAGGTGACAGACGCGCTGCATACCCTGTTATACT
ATGTTATTCAGTGATACATTTAGTACACACACTCAAATAACCACGCACAA
ACTATACTAAATTTGAGAGTCAGACATGAACTAGTTATTTTATGACATTA
AGACCATTGAAAGGAGTTGGCTGTTTTGTTGTTTAAATCCTACTAAACTG
TAAAACTATATATTAGTTTAATAATCTGAGATTATTGATATAGACATGTA
CTCTTAATGTTTCGATATTTTTCAAAACGATAACAAAATATTGCAGATAG
GGAATCAGTTAAAATACTTCAGTTTTCCGACTAACGACCAATTGTTTTTT
CCAGTGATGAATCTAAAAATTGAAGTAGTATCCCCCATAGAAATGATTTT
TGTAAAATTATGAACTCTGAATTATGTGAAATATAGTGGTCAGATGCTGA
GTAAAAAAAAAAAAAAAA

RE13562.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12125-RA 2915 CG12125-RA 127..2885 1..2758 13725 99.8 Plus
CG12125.a 2840 CG12125.a 127..2840 1..2713 13500 99.8 Plus
CG12125.b 2807 CG12125.b 127..2807 1..2680 13335 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8326760..8327956 1723..527 5970 99.9 Minus
chrX 22417052 chrX 8325666..8326697 2752..1722 5095 99.8 Minus
chrX 22417052 chrX 8328014..8328543 530..1 2650 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8435017..8436213 1723..527 5970 99.9 Minus
X 23542271 X 8433917..8434954 2758..1722 5125 99.8 Minus
X 23542271 X 8436271..8436800 530..1 2650 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8443115..8444311 1723..527 5970 99.9 Minus
X 23527363 X 8442015..8443052 2758..1722 5135 99.8 Minus
X 23527363 X 8444369..8444898 530..1 2650 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:37:13 has no hits.

RE13562.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:37:54 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8325666..8326696 1723..2752 99 <- Minus
chrX 8326761..8327954 529..1722 99 <- Minus
chrX 8328016..8328543 1..528 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:31 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RB 1..1578 454..2031 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:59:07 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RB 1..1578 454..2031 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:27:34 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 1..1578 454..2031 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:52:23 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 1..1578 454..2031 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:28 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 1..1578 454..2031 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:39:44 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 1..2753 1..2752 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:59:07 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 1..2753 1..2752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:27:34 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 2..2754 1..2752 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:52:24 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 1..2753 1..2752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:28 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 2..2754 1..2752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:54 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
X 8433923..8434953 1723..2752 99 <- Minus
X 8435018..8436211 529..1722 99 <- Minus
X 8436273..8436800 1..528 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:54 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
X 8433923..8434953 1723..2752 99 <- Minus
X 8435018..8436211 529..1722 99 <- Minus
X 8436273..8436800 1..528 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:54 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
X 8433923..8434953 1723..2752 99 <- Minus
X 8435018..8436211 529..1722 99 <- Minus
X 8436273..8436800 1..528 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:27:34 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8327956..8328986 1723..2752 99 <- Minus
arm_X 8329051..8330244 529..1722 99 <- Minus
arm_X 8330306..8330833 1..528 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:24:30 Download gff for RE13562.complete
Subject Subject Range Query Range Percent Splice Strand
X 8442021..8443051 1723..2752 99 <- Minus
X 8443116..8444309 529..1722 99 <- Minus
X 8444371..8444898 1..528 100   Minus

RE13562.pep Sequence

Translation from 453 to 2030

> RE13562.pep
MQRVMPASWSSGGSLLPFRVSTTTKVVLFSLTAGVALMSVLSRFLRRRKP
PRPPRRARKYTGRRNRNSMRSPNDLISIAGSKASARSGSPVGSTLAYSDR
LSMASGSIGVGVLGVQNAGPGSSVVTQLTAQQLGMMGMEALDTVINFWED
ALAAHYSPGGLPALLTTAEDSEFCREIQNLLEMAYTLQEQSELLFLDQRS
VLFREEHSIDEAEEEAGEADDDRRSRKSGSVLSRAGSDPNFDSAESFASA
LDQVADLREFDGFIETSYEEYPLFQSALKHHDEYTVPCRTIRAELMHCST
DTEYLAKLHCVRLAFQFLFKDPAVGQWICDAGRQILTDLLCLGDKDTKEF
LVGYEDMVNYLHDSNNWPCIQMELEQRNVKAMTFYDICLDFIILDSFKDL
DAPPASVTAVVQNRWLSNGFKETALTTAVWSVLKAKKRMLKFPNGFMSHF
YVISEQISPLMAWGFFGPNENLRDICHYFREELLAFLGDIFSFQKSRFTT
IEEFSQDVLQHMQTRVNNIGVKFSQ*

RE13562.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21838-PA 523 GF21838-PA 1..523 1..525 2601 95 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19053-PA 521 GG19053-PA 1..521 1..525 2744 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24199-PA 536 GH24199-PA 1..536 1..525 2361 87.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Miga-PC 525 CG12125-PC 1..525 1..525 2717 100 Plus
Miga-PB 525 CG12125-PB 1..525 1..525 2717 100 Plus
Miga-PA 525 CG12125-PA 1..525 1..525 2717 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15883-PA 527 GI15883-PA 9..527 12..525 2421 89.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16568-PA 429 GL16568-PA 1..268 1..262 933 79.4 Plus
Dper\GL21203-PA 120 GL21203-PA 23..114 109..200 182 46.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11419-PA 530 GA11419-PA 1..530 1..525 2431 89.1 Plus
Dpse\GA28767-PA 120 GA28767-PA 23..114 109..200 181 45.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21377-PA 525 GM21377-PA 1..525 1..525 2817 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24570-PA 525 GD24570-PA 1..525 1..525 2766 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18710-PA 526 GJ18710-PA 1..526 1..525 2377 88.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24929-PA 535 GK24929-PA 1..535 1..525 2466 89.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17457-PA 525 GE17457-PA 1..525 1..525 2812 99 Plus

RE13562.hyp Sequence

Translation from 453 to 2030

> RE13562.hyp
MQRVMPASWSSGGSLLPFRVSTTTKVVLFSLTAGVALMSVLSRFLRRRKP
PRPPRRARKYTGRRNRNSMRSPNDLISIAGSKASARSGSPVGSTLAYSDR
LSMASGSIGVGVLGVQNAGPGSSVVTQLTAQQLGMMGMEALDTVINFWED
ALAAHYSPGGLPALLTTAEDSEFCREIQNLLEMAYTLQEQSELLFLDQRS
VLFREEHSIDEAEEEAGEADDDRRSRKSGSVLSRAGSDPNFDSAESFASA
LDQVADLREFDGFIETSYEEYPLFQSALKHHDEYTVPCRTIRAELMHCST
DTEYLAKLHCVRLAFQFLFKDPAVGQWICDAGRQILTDLLCLGDKDTKEF
LVGYEDMVNYLHDSNNWPCIQMELEQRNVKAMTFYDICLDFIILDSFKDL
DAPPASVTAVVQNRWLSNGFKETALTTAVWSVLKAKKRMLKFPNGFMSHF
YVISEQISPLMAWGFFGPNENLRDICHYFREELLAFLGDIFSFQKSRFTT
IEEFSQDVLQHMQTRVNNIGVKFSQ*

RE13562.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12125-PC 525 CG12125-PC 1..525 1..525 2717 100 Plus
CG12125-PB 525 CG12125-PB 1..525 1..525 2717 100 Plus
CG12125-PA 525 CG12125-PA 1..525 1..525 2717 100 Plus