Clone RE13606 Report

Search the DGRC for RE13606

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:136
Well:6
Vector:pFlc-1
Associated Gene/TranscriptPbgs-RA
Protein status:RE13606.pep: gold
Preliminary Size:984
Sequenced Size:1379

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10335 2001-12-14 Blastp of sequenced clone
CG10335 2002-01-01 Sim4 clustering to Release 2
CG10335 2003-01-01 Sim4 clustering to Release 3
Pbgs 2008-04-29 Release 5.5 accounting
Pbgs 2008-08-15 Release 5.9 accounting
Pbgs 2008-12-18 5.12 accounting

Clone Sequence Records

RE13606.complete Sequence

1379 bp (1379 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071047

> RE13606.complete
AATTTCACTTGTTGTTACGTTGGTTTTAATTTTCACCGGGAGCTAAGCGA
ACAAAATGGAGCGGAAACTGCACAGTGGAATGCACCATGCCACGCTGCGG
CAGCTGCAGGAGTCGGGCTGCGAGATAGCGCCGCACAATCTCATGTATCC
GGTGTTCATCGTGAGCAACGACGACGATGTCCAGCCAATTGCCAGCATGC
CAGGAATCTCGAGATTCGGACTGAATCGCCTGAAGGAGCACCTGGAACCG
CTGGTGGCCAAGGGACTGTCGTCGGTGCTGCTCTTTGGCGTTGTGGACCC
GGACATGAAGGATGAGCAGGCCTCCAATGCGGATTCAGCAAAGAATCCAG
TCGTTCTCGCACTGCCGAAGCTCCGGGAATGGTTTCCGGATCTGCTGATA
GCCTGTGATGTGTGCATCTGCCCGTACTCCTCGCACGGTCACTGCGGCCT
GCTGGGCGAAACGGGTCTGGAGAACGGACCCAGCATAAAGCGGATAGCCG
AGATCGCCGTGGCTTATGCCAAAGCTGGAGCACACATTGTGGCTCCATCG
GACATGATGGACAACCGGGTGAAGGCCATTAAGCAGGCCCTCATCGATGC
CCAGATGAACAGTGTATCCCTGCTGGCGTACTCCGCCAAGTTCACATCCA
ATTTCTATGGACCCTTCCGGGAGGCAGCACAATCTGCACCGAAATTCGGT
GACCGGAGGTGCTATCAACTGCCCAGTGGCTCCAGAAGCTTAGCAATGAG
AGCCATTCAACGTGATGTCGCCGAGGGAGCCGACATGCTGATGGTGAAAC
CGGGAATGCCCTATCTGGATATCCTACGATCCACAAAGGATTCCTATCCG
TATCACACGCTGTACGTCTACCAGGTTTCCGGGGAGTTCGCTATGCTGTA
TCATGCCGCCAAGGCGGGAGCCTTTGACCTCAAGGATGCCGTGCTGGAGG
CCATGAAGGGCTTTCGACGAGCTGGTGCCGATTGCATCATCACCTACTAC
ACACCCTTTCTGCTGGACATTATCGGAAAGGTCAAGTAATGGTCTACGTT
CCATGTCCGATGTCTTGATACCATGTTCATATGTACATGCGTAGATTAGA
GTGGACCTCTTAAAATCATTAATGGAAAATGGAACTTTTTGTAACAGATA
GTGCAATTTTTGTAGGATTTTCTAATTATTTATACGGAGCTCTCCATATT
TTATACTTTAATAAGCAAAAGAATAAATATTCAGGGACCAGCATATTCAT
TTTACCGATTAAGTGGCTTAAATAAGACTCAAAGGCTTTTACTTACATCA
ATATAGAAGTTATTCTAATACATTAAGATGTGTATTCAATAAAAGAAGTC
CACTCTAGTCTCGAAAAAAAAAAAAAAAA

RE13606.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Pbgs-RA 1369 Pbgs-RA 1..1365 1..1365 6825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12260623..12261974 1363..12 6670 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12269966..12271330 1365..1 6825 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12263066..12264430 1365..1 6825 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:41:42 has no hits.

RE13606.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:42:30 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12260623..12261982 1..1363 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:33 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 1..984 56..1039 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:22 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 1..984 56..1039 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:37:43 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 1..984 56..1039 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:39 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 1..984 56..1039 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:47 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 1..984 56..1039 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:37:20 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 1..1363 1..1363 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:22 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 24..1386 1..1363 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:43 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 16..1378 1..1363 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:39 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 1..1363 1..1363 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:47 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 16..1378 1..1363 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:30 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12269968..12271330 1..1363 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:30 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12269968..12271330 1..1363 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:30 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12269968..12271330 1..1363 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:43 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12263068..12264430 1..1363 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:34 Download gff for RE13606.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12263068..12264430 1..1363 100   Minus

RE13606.pep Sequence

Translation from 55 to 1038

> RE13606.pep
MERKLHSGMHHATLRQLQESGCEIAPHNLMYPVFIVSNDDDVQPIASMPG
ISRFGLNRLKEHLEPLVAKGLSSVLLFGVVDPDMKDEQASNADSAKNPVV
LALPKLREWFPDLLIACDVCICPYSSHGHCGLLGETGLENGPSIKRIAEI
AVAYAKAGAHIVAPSDMMDNRVKAIKQALIDAQMNSVSLLAYSAKFTSNF
YGPFREAAQSAPKFGDRRCYQLPSGSRSLAMRAIQRDVAEGADMLMVKPG
MPYLDILRSTKDSYPYHTLYVYQVSGEFAMLYHAAKAGAFDLKDAVLEAM
KGFRRAGADCIITYYTPFLLDIIGKVK*

RE13606.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24991-PA 327 GF24991-PA 1..327 1..327 1656 93.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13842-PA 327 GG13842-PA 1..327 1..327 1735 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16077-PA 327 GH16077-PA 1..325 1..325 1506 84.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pbgs-PB 327 CG10335-PB 1..327 1..327 1697 100 Plus
Pbgs-PA 327 CG10335-PA 1..327 1..327 1697 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12339-PA 327 GI12339-PA 1..325 1..325 1515 84.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25004-PA 327 GL25004-PA 1..326 1..326 1593 89 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10250-PA 327 GA10250-PA 1..326 1..326 1592 88.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24669-PA 327 GM24669-PA 1..327 1..327 1734 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12734-PA 327 GD12734-PA 1..327 1..327 1742 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12231-PA 327 GJ12231-PA 1..325 1..325 1500 83.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16976-PA 328 GK16976-PA 1..323 1..323 1552 87 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20132-PA 327 GE20132-PA 1..327 1..327 1686 95.7 Plus

RE13606.hyp Sequence

Translation from 55 to 1038

> RE13606.hyp
MERKLHSGMHHATLRQLQESGCEIAPHNLMYPVFIVSNDDDVQPIASMPG
ISRFGLNRLKEHLEPLVAKGLSSVLLFGVVDPDMKDEQASNADSAKNPVV
LALPKLREWFPDLLIACDVCICPYSSHGHCGLLGETGLENGPSIKRIAEI
AVAYAKAGAHIVAPSDMMDNRVKAIKQALIDAQMNSVSLLAYSAKFTSNF
YGPFREAAQSAPKFGDRRCYQLPSGSRSLAMRAIQRDVAEGADMLMVKPG
MPYLDILRSTKDSYPYHTLYVYQVSGEFAMLYHAAKAGAFDLKDAVLEAM
KGFRRAGADCIITYYTPFLLDIIGKVK*

RE13606.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pbgs-PB 327 CG10335-PB 1..327 1..327 1697 100 Plus
Pbgs-PA 327 CG10335-PA 1..327 1..327 1697 100 Plus