BDGP Sequence Production Resources |
Search the DGRC for RE13606
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 136 |
Well: | 6 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pbgs-RA |
Protein status: | RE13606.pep: gold |
Preliminary Size: | 984 |
Sequenced Size: | 1379 |
Gene | Date | Evidence |
---|---|---|
CG10335 | 2001-12-14 | Blastp of sequenced clone |
CG10335 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10335 | 2003-01-01 | Sim4 clustering to Release 3 |
Pbgs | 2008-04-29 | Release 5.5 accounting |
Pbgs | 2008-08-15 | Release 5.9 accounting |
Pbgs | 2008-12-18 | 5.12 accounting |
1379 bp (1379 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071047
> RE13606.complete AATTTCACTTGTTGTTACGTTGGTTTTAATTTTCACCGGGAGCTAAGCGA ACAAAATGGAGCGGAAACTGCACAGTGGAATGCACCATGCCACGCTGCGG CAGCTGCAGGAGTCGGGCTGCGAGATAGCGCCGCACAATCTCATGTATCC GGTGTTCATCGTGAGCAACGACGACGATGTCCAGCCAATTGCCAGCATGC CAGGAATCTCGAGATTCGGACTGAATCGCCTGAAGGAGCACCTGGAACCG CTGGTGGCCAAGGGACTGTCGTCGGTGCTGCTCTTTGGCGTTGTGGACCC GGACATGAAGGATGAGCAGGCCTCCAATGCGGATTCAGCAAAGAATCCAG TCGTTCTCGCACTGCCGAAGCTCCGGGAATGGTTTCCGGATCTGCTGATA GCCTGTGATGTGTGCATCTGCCCGTACTCCTCGCACGGTCACTGCGGCCT GCTGGGCGAAACGGGTCTGGAGAACGGACCCAGCATAAAGCGGATAGCCG AGATCGCCGTGGCTTATGCCAAAGCTGGAGCACACATTGTGGCTCCATCG GACATGATGGACAACCGGGTGAAGGCCATTAAGCAGGCCCTCATCGATGC CCAGATGAACAGTGTATCCCTGCTGGCGTACTCCGCCAAGTTCACATCCA ATTTCTATGGACCCTTCCGGGAGGCAGCACAATCTGCACCGAAATTCGGT GACCGGAGGTGCTATCAACTGCCCAGTGGCTCCAGAAGCTTAGCAATGAG AGCCATTCAACGTGATGTCGCCGAGGGAGCCGACATGCTGATGGTGAAAC CGGGAATGCCCTATCTGGATATCCTACGATCCACAAAGGATTCCTATCCG TATCACACGCTGTACGTCTACCAGGTTTCCGGGGAGTTCGCTATGCTGTA TCATGCCGCCAAGGCGGGAGCCTTTGACCTCAAGGATGCCGTGCTGGAGG CCATGAAGGGCTTTCGACGAGCTGGTGCCGATTGCATCATCACCTACTAC ACACCCTTTCTGCTGGACATTATCGGAAAGGTCAAGTAATGGTCTACGTT CCATGTCCGATGTCTTGATACCATGTTCATATGTACATGCGTAGATTAGA GTGGACCTCTTAAAATCATTAATGGAAAATGGAACTTTTTGTAACAGATA GTGCAATTTTTGTAGGATTTTCTAATTATTTATACGGAGCTCTCCATATT TTATACTTTAATAAGCAAAAGAATAAATATTCAGGGACCAGCATATTCAT TTTACCGATTAAGTGGCTTAAATAAGACTCAAAGGCTTTTACTTACATCA ATATAGAAGTTATTCTAATACATTAAGATGTGTATTCAATAAAAGAAGTC CACTCTAGTCTCGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pbgs-RA | 1369 | Pbgs-RA | 1..1365 | 1..1365 | 6825 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 12260623..12261974 | 1363..12 | 6670 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 12269966..12271330 | 1365..1 | 6825 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 12263066..12264430 | 1365..1 | 6825 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 12260623..12261982 | 1..1363 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbgs-RA | 1..984 | 56..1039 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbgs-RA | 1..984 | 56..1039 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbgs-RA | 1..984 | 56..1039 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbgs-RA | 1..984 | 56..1039 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbgs-RA | 1..984 | 56..1039 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbgs-RA | 1..1363 | 1..1363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbgs-RA | 24..1386 | 1..1363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbgs-RA | 16..1378 | 1..1363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbgs-RA | 1..1363 | 1..1363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbgs-RA | 16..1378 | 1..1363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12269968..12271330 | 1..1363 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12269968..12271330 | 1..1363 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12269968..12271330 | 1..1363 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 12263068..12264430 | 1..1363 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12263068..12264430 | 1..1363 | 100 | Minus |
Translation from 55 to 1038
> RE13606.pep MERKLHSGMHHATLRQLQESGCEIAPHNLMYPVFIVSNDDDVQPIASMPG ISRFGLNRLKEHLEPLVAKGLSSVLLFGVVDPDMKDEQASNADSAKNPVV LALPKLREWFPDLLIACDVCICPYSSHGHCGLLGETGLENGPSIKRIAEI AVAYAKAGAHIVAPSDMMDNRVKAIKQALIDAQMNSVSLLAYSAKFTSNF YGPFREAAQSAPKFGDRRCYQLPSGSRSLAMRAIQRDVAEGADMLMVKPG MPYLDILRSTKDSYPYHTLYVYQVSGEFAMLYHAAKAGAFDLKDAVLEAM KGFRRAGADCIITYYTPFLLDIIGKVK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24991-PA | 327 | GF24991-PA | 1..327 | 1..327 | 1656 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13842-PA | 327 | GG13842-PA | 1..327 | 1..327 | 1735 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16077-PA | 327 | GH16077-PA | 1..325 | 1..325 | 1506 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pbgs-PB | 327 | CG10335-PB | 1..327 | 1..327 | 1697 | 100 | Plus |
Pbgs-PA | 327 | CG10335-PA | 1..327 | 1..327 | 1697 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12339-PA | 327 | GI12339-PA | 1..325 | 1..325 | 1515 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25004-PA | 327 | GL25004-PA | 1..326 | 1..326 | 1593 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10250-PA | 327 | GA10250-PA | 1..326 | 1..326 | 1592 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24669-PA | 327 | GM24669-PA | 1..327 | 1..327 | 1734 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12734-PA | 327 | GD12734-PA | 1..327 | 1..327 | 1742 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12231-PA | 327 | GJ12231-PA | 1..325 | 1..325 | 1500 | 83.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16976-PA | 328 | GK16976-PA | 1..323 | 1..323 | 1552 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20132-PA | 327 | GE20132-PA | 1..327 | 1..327 | 1686 | 95.7 | Plus |
Translation from 55 to 1038
> RE13606.hyp MERKLHSGMHHATLRQLQESGCEIAPHNLMYPVFIVSNDDDVQPIASMPG ISRFGLNRLKEHLEPLVAKGLSSVLLFGVVDPDMKDEQASNADSAKNPVV LALPKLREWFPDLLIACDVCICPYSSHGHCGLLGETGLENGPSIKRIAEI AVAYAKAGAHIVAPSDMMDNRVKAIKQALIDAQMNSVSLLAYSAKFTSNF YGPFREAAQSAPKFGDRRCYQLPSGSRSLAMRAIQRDVAEGADMLMVKPG MPYLDILRSTKDSYPYHTLYVYQVSGEFAMLYHAAKAGAFDLKDAVLEAM KGFRRAGADCIITYYTPFLLDIIGKVK*