BDGP Sequence Production Resources |
Search the DGRC for RE13621
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 136 |
Well: | 21 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4933-RA |
Protein status: | RE13621.pep: gold |
Preliminary Size: | 1044 |
Sequenced Size: | 1147 |
Gene | Date | Evidence |
---|---|---|
CG4933 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4933 | 2002-03-20 | Blastp of sequenced clone |
CG4933 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4933 | 2008-04-29 | Release 5.5 accounting |
CG4933 | 2008-08-15 | Release 5.9 accounting |
CG4933 | 2008-12-18 | 5.12 accounting |
1147 bp (1147 high quality bases) assembled on 2002-03-20
GenBank Submission: AY094853
> RE13621.complete TTAGAATTTTAAACATGGTTTGCGCTTTGGGTATTGAAGGCAGTGCCAAT AAAATTGGCATTGGCATAATTCGAGATGGTAAAGTACTGGCGAACGTACG TAGAACGTACATTACCCCACCAGGAGAAGGTTTCCTGCCCAAGGAAACGG CCAAACATCACAGGGAAGCCATCCTGGGCTTGGTGGAATCCAGTCTAAAG GAAGCCCAATTGAAATCCTCTGATCTAGATGTTATTTGTTACACAAAAGG CCCAGGAATGGCTCCTCCTTTGCTGGTTGGCGCCATTGTGGCTCGCACTT TGTCGCTCTTGTGGAATATCCCGCTGCTGGGCGTAAATCACTGCATTGGA CACATCGAGATGGGTCGCCTGATCACCGGTGCCCAGAATCCTACAGTTCT CTATGTGAGCGGTGGAAACACACAGGTTATTGCCTACTCCAATAAGCGAT ATCGCATCTTTGGCGAAACTATAGACATTGCAGTGGGCAATTGCCTGGAT CGATTCGCCCGCATCATTAAGCTGTCCAACGATCCTAGTCCGGGCTACAA CATCGAGCAGCTGGCCAAGTCGAGCAATCGTTATATTAAACTGCCCTATG TGGTTAAGGGCATGGATGTCAGCTTCTCGGGGATTTTATCCTACATCGAG GACCTGGCAGAGCCGGGCAAGAGGCAAAATAAGAGAAAAAAGCCACAGGA AGAAGAGGTCAATAATTACAGCCAAGCCGATCTTTGCTATTCGCTGCAGG AGACCATCTTCGCCATGTTGGTGGAGATCACAGAGCGCGCCATGGCACAC TGCGGCTCAAATGAGGTCCTTATAGTTGGAGGTGTGGGTTGCAATGAGCG ACTCCAGGAGATGATGCGTATTATGTGCGAGGAACGCGGAGGCAAACTCT TTGCCACTGATGAACGTTACTGCATAGACAACGGACTAATGATTGCCCAT GCTGGTGCAGAAATGTTCCGCTCTGGCACTAGGATGCCCTTTGAGGAATC TTATGTGACTCAGCGATTTCGAACGGACGAAGTGCTGGTCAGCTGGCGGG ATGACTAATCACCACAAGAACTTATTTCTGTGCATCGTTTGTTTATTAAA TAACTAGTGTCCATAATAACTTCATATTTGTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16341980..16342669 | 128..817 | 3420 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 16342721..16343038 | 814..1131 | 1575 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 16341792..16341922 | 1..131 | 640 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16352228..16352917 | 128..817 | 3450 | 100 | Plus |
3L | 28110227 | 3L | 16352969..16353290 | 814..1135 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 16352040..16352170 | 1..131 | 655 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16345328..16346017 | 128..817 | 3450 | 100 | Plus |
3L | 28103327 | 3L | 16346069..16346390 | 814..1135 | 1610 | 100 | Plus |
3L | 28103327 | 3L | 16345140..16345270 | 1..131 | 655 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16341792..16341920 | 1..129 | 99 | -> | Plus |
chr3L | 16341982..16342667 | 130..815 | 99 | -> | Plus |
chr3L | 16342723..16343038 | 816..1131 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4933-RA | 1..1044 | 15..1058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4933-RA | 1..1044 | 15..1058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4933-RA | 1..1044 | 15..1058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4933-RA | 1..1044 | 15..1058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4933-RA | 1..1044 | 15..1058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4933-RA | 1..1131 | 1..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4933-RA | 1..1131 | 1..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4933-RA | 50..1180 | 1..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4933-RA | 1..1131 | 1..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4933-RA | 50..1180 | 1..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16352040..16352168 | 1..129 | 100 | -> | Plus |
3L | 16352230..16352915 | 130..815 | 100 | -> | Plus |
3L | 16352971..16353286 | 816..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16352040..16352168 | 1..129 | 100 | -> | Plus |
3L | 16352230..16352915 | 130..815 | 100 | -> | Plus |
3L | 16352971..16353286 | 816..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16352040..16352168 | 1..129 | 100 | -> | Plus |
3L | 16352230..16352915 | 130..815 | 100 | -> | Plus |
3L | 16352971..16353286 | 816..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16345140..16345268 | 1..129 | 100 | -> | Plus |
arm_3L | 16345330..16346015 | 130..815 | 100 | -> | Plus |
arm_3L | 16346071..16346386 | 816..1131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16345330..16346015 | 130..815 | 100 | -> | Plus |
3L | 16346071..16346386 | 816..1131 | 100 | Plus | |
3L | 16345140..16345268 | 1..129 | 100 | -> | Plus |
Translation from 2 to 1057
> RE13621.hyp RILNMVCALGIEGSANKIGIGIIRDGKVLANVRRTYITPPGEGFLPKETA KHHREAILGLVESSLKEAQLKSSDLDVICYTKGPGMAPPLLVGAIVARTL SLLWNIPLLGVNHCIGHIEMGRLITGAQNPTVLYVSGGNTQVIAYSNKRY RIFGETIDIAVGNCLDRFARIIKLSNDPSPGYNIEQLAKSSNRYIKLPYV VKGMDVSFSGILSYIEDLAEPGKRQNKRKKPQEEEVNNYSQADLCYSLQE TIFAMLVEITERAMAHCGSNEVLIVGGVGCNERLQEMMRIMCEERGGKLF ATDERYCIDNGLMIAHAGAEMFRSGTRMPFEESYVTQRFRTDEVLVSWRD D*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4933-PA | 347 | CG4933-PA | 1..347 | 5..351 | 1800 | 100 | Plus |
CG14231-PB | 409 | CG14231-PB | 28..362 | 9..320 | 274 | 30.9 | Plus |
CG14231-PA | 409 | CG14231-PA | 28..362 | 9..320 | 274 | 30.9 | Plus |
Translation from 14 to 1057
> RE13621.pep MVCALGIEGSANKIGIGIIRDGKVLANVRRTYITPPGEGFLPKETAKHHR EAILGLVESSLKEAQLKSSDLDVICYTKGPGMAPPLLVGAIVARTLSLLW NIPLLGVNHCIGHIEMGRLITGAQNPTVLYVSGGNTQVIAYSNKRYRIFG ETIDIAVGNCLDRFARIIKLSNDPSPGYNIEQLAKSSNRYIKLPYVVKGM DVSFSGILSYIEDLAEPGKRQNKRKKPQEEEVNNYSQADLCYSLQETIFA MLVEITERAMAHCGSNEVLIVGGVGCNERLQEMMRIMCEERGGKLFATDE RYCIDNGLMIAHAGAEMFRSGTRMPFEESYVTQRFRTDEVLVSWRDD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10115-PA | 347 | GF10115-PA | 1..347 | 1..347 | 1760 | 94.2 | Plus |
Dana\GF20469-PA | 416 | GF20469-PA | 35..386 | 5..340 | 295 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15998-PA | 347 | GG15998-PA | 1..347 | 1..347 | 1780 | 95.7 | Plus |
Dere\GG18029-PA | 409 | GG18029-PA | 28..364 | 5..318 | 265 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15886-PA | 347 | GH15886-PA | 1..347 | 1..347 | 1670 | 89 | Plus |
Dgri\GH12256-PA | 405 | GH12256-PA | 27..361 | 5..318 | 285 | 29.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tcs3-PA | 347 | CG4933-PA | 1..347 | 1..347 | 1800 | 100 | Plus |
CG14231-PB | 409 | CG14231-PB | 28..362 | 5..316 | 274 | 30.9 | Plus |
CG14231-PA | 409 | CG14231-PA | 28..362 | 5..316 | 274 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16537-PA | 347 | GI16537-PA | 1..347 | 1..347 | 1648 | 87.9 | Plus |
Dmoj\GI11016-PA | 405 | GI11016-PA | 27..361 | 5..318 | 282 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17856-PA | 347 | GL17856-PA | 1..347 | 1..347 | 1603 | 85.3 | Plus |
Dper\GL18305-PA | 427 | GL18305-PA | 31..379 | 5..330 | 274 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18535-PA | 347 | GA18535-PA | 1..347 | 1..347 | 1601 | 85.3 | Plus |
Dpse\GA12844-PA | 427 | GA12844-PA | 31..379 | 5..330 | 279 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25628-PA | 347 | GM25628-PA | 1..347 | 1..347 | 1819 | 97.7 | Plus |
Dsec\GM22713-PA | 409 | GM22713-PA | 28..379 | 5..340 | 284 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14632-PA | 347 | GD14632-PA | 1..347 | 1..347 | 1794 | 96.5 | Plus |
Dsim\GD15569-PA | 409 | GD15569-PA | 28..379 | 5..340 | 286 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12789-PA | 347 | GJ12789-PA | 1..347 | 1..347 | 1676 | 89.9 | Plus |
Dvir\GJ15615-PA | 406 | GJ15615-PA | 28..362 | 5..318 | 281 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14080-PA | 351 | GK14080-PA | 1..351 | 1..347 | 1570 | 86.3 | Plus |
Dwil\GK15909-PA | 417 | GK15909-PA | 26..361 | 6..318 | 287 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23088-PA | 347 | GE23088-PA | 1..347 | 1..347 | 1798 | 96.8 | Plus |
Dyak\GE19561-PA | 140 | GE19561-PA | 1..86 | 1..86 | 436 | 96.5 | Plus |
Dyak\GE17358-PA | 409 | GE17358-PA | 28..379 | 5..340 | 283 | 29.4 | Plus |