Clone RE13621 Report

Search the DGRC for RE13621

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:136
Well:21
Vector:pFlc-1
Associated Gene/TranscriptCG4933-RA
Protein status:RE13621.pep: gold
Preliminary Size:1044
Sequenced Size:1147

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4933 2002-01-01 Sim4 clustering to Release 2
CG4933 2002-03-20 Blastp of sequenced clone
CG4933 2003-01-01 Sim4 clustering to Release 3
CG4933 2008-04-29 Release 5.5 accounting
CG4933 2008-08-15 Release 5.9 accounting
CG4933 2008-12-18 5.12 accounting

Clone Sequence Records

RE13621.complete Sequence

1147 bp (1147 high quality bases) assembled on 2002-03-20

GenBank Submission: AY094853

> RE13621.complete
TTAGAATTTTAAACATGGTTTGCGCTTTGGGTATTGAAGGCAGTGCCAAT
AAAATTGGCATTGGCATAATTCGAGATGGTAAAGTACTGGCGAACGTACG
TAGAACGTACATTACCCCACCAGGAGAAGGTTTCCTGCCCAAGGAAACGG
CCAAACATCACAGGGAAGCCATCCTGGGCTTGGTGGAATCCAGTCTAAAG
GAAGCCCAATTGAAATCCTCTGATCTAGATGTTATTTGTTACACAAAAGG
CCCAGGAATGGCTCCTCCTTTGCTGGTTGGCGCCATTGTGGCTCGCACTT
TGTCGCTCTTGTGGAATATCCCGCTGCTGGGCGTAAATCACTGCATTGGA
CACATCGAGATGGGTCGCCTGATCACCGGTGCCCAGAATCCTACAGTTCT
CTATGTGAGCGGTGGAAACACACAGGTTATTGCCTACTCCAATAAGCGAT
ATCGCATCTTTGGCGAAACTATAGACATTGCAGTGGGCAATTGCCTGGAT
CGATTCGCCCGCATCATTAAGCTGTCCAACGATCCTAGTCCGGGCTACAA
CATCGAGCAGCTGGCCAAGTCGAGCAATCGTTATATTAAACTGCCCTATG
TGGTTAAGGGCATGGATGTCAGCTTCTCGGGGATTTTATCCTACATCGAG
GACCTGGCAGAGCCGGGCAAGAGGCAAAATAAGAGAAAAAAGCCACAGGA
AGAAGAGGTCAATAATTACAGCCAAGCCGATCTTTGCTATTCGCTGCAGG
AGACCATCTTCGCCATGTTGGTGGAGATCACAGAGCGCGCCATGGCACAC
TGCGGCTCAAATGAGGTCCTTATAGTTGGAGGTGTGGGTTGCAATGAGCG
ACTCCAGGAGATGATGCGTATTATGTGCGAGGAACGCGGAGGCAAACTCT
TTGCCACTGATGAACGTTACTGCATAGACAACGGACTAATGATTGCCCAT
GCTGGTGCAGAAATGTTCCGCTCTGGCACTAGGATGCCCTTTGAGGAATC
TTATGTGACTCAGCGATTTCGAACGGACGAAGTGCTGGTCAGCTGGCGGG
ATGACTAATCACCACAAGAACTTATTTCTGTGCATCGTTTGTTTATTAAA
TAACTAGTGTCCATAATAACTTCATATTTGTAAAAAAAAAAAAAAAA

RE13621.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-RA 1226 CG4933-RA 76..1210 1..1135 5675 100 Plus
Pdh.b 1103 Pdh.b 1040..1103 1135..1072 320 100 Minus
Pdh-RB 1103 Pdh-RB 1040..1103 1135..1072 320 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16341980..16342669 128..817 3420 99.7 Plus
chr3L 24539361 chr3L 16342721..16343038 814..1131 1575 99.7 Plus
chr3L 24539361 chr3L 16341792..16341922 1..131 640 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16352228..16352917 128..817 3450 100 Plus
3L 28110227 3L 16352969..16353290 814..1135 1610 100 Plus
3L 28110227 3L 16352040..16352170 1..131 655 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16345328..16346017 128..817 3450 100 Plus
3L 28103327 3L 16346069..16346390 814..1135 1610 100 Plus
3L 28103327 3L 16345140..16345270 1..131 655 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:37:16 has no hits.

RE13621.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:37:56 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16341792..16341920 1..129 99 -> Plus
chr3L 16341982..16342667 130..815 99 -> Plus
chr3L 16342723..16343038 816..1131 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:34 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 1..1044 15..1058 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:26:18 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 1..1044 15..1058 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:27:36 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 1..1044 15..1058 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:01:31 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 1..1044 15..1058 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:33 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 1..1044 15..1058 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:52:51 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 1..1131 1..1131 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:26:17 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 1..1131 1..1131 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:27:36 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 50..1180 1..1131 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:01:31 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 1..1131 1..1131 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:33 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
CG4933-RA 50..1180 1..1131 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:56 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16352040..16352168 1..129 100 -> Plus
3L 16352230..16352915 130..815 100 -> Plus
3L 16352971..16353286 816..1131 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:56 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16352040..16352168 1..129 100 -> Plus
3L 16352230..16352915 130..815 100 -> Plus
3L 16352971..16353286 816..1131 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:56 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16352040..16352168 1..129 100 -> Plus
3L 16352230..16352915 130..815 100 -> Plus
3L 16352971..16353286 816..1131 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:27:36 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16345140..16345268 1..129 100 -> Plus
arm_3L 16345330..16346015 130..815 100 -> Plus
arm_3L 16346071..16346386 816..1131 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:34:41 Download gff for RE13621.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16345330..16346015 130..815 100 -> Plus
3L 16346071..16346386 816..1131 100   Plus
3L 16345140..16345268 1..129 100 -> Plus

RE13621.hyp Sequence

Translation from 2 to 1057

> RE13621.hyp
RILNMVCALGIEGSANKIGIGIIRDGKVLANVRRTYITPPGEGFLPKETA
KHHREAILGLVESSLKEAQLKSSDLDVICYTKGPGMAPPLLVGAIVARTL
SLLWNIPLLGVNHCIGHIEMGRLITGAQNPTVLYVSGGNTQVIAYSNKRY
RIFGETIDIAVGNCLDRFARIIKLSNDPSPGYNIEQLAKSSNRYIKLPYV
VKGMDVSFSGILSYIEDLAEPGKRQNKRKKPQEEEVNNYSQADLCYSLQE
TIFAMLVEITERAMAHCGSNEVLIVGGVGCNERLQEMMRIMCEERGGKLF
ATDERYCIDNGLMIAHAGAEMFRSGTRMPFEESYVTQRFRTDEVLVSWRD
D*

RE13621.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4933-PA 347 CG4933-PA 1..347 5..351 1800 100 Plus
CG14231-PB 409 CG14231-PB 28..362 9..320 274 30.9 Plus
CG14231-PA 409 CG14231-PA 28..362 9..320 274 30.9 Plus

RE13621.pep Sequence

Translation from 14 to 1057

> RE13621.pep
MVCALGIEGSANKIGIGIIRDGKVLANVRRTYITPPGEGFLPKETAKHHR
EAILGLVESSLKEAQLKSSDLDVICYTKGPGMAPPLLVGAIVARTLSLLW
NIPLLGVNHCIGHIEMGRLITGAQNPTVLYVSGGNTQVIAYSNKRYRIFG
ETIDIAVGNCLDRFARIIKLSNDPSPGYNIEQLAKSSNRYIKLPYVVKGM
DVSFSGILSYIEDLAEPGKRQNKRKKPQEEEVNNYSQADLCYSLQETIFA
MLVEITERAMAHCGSNEVLIVGGVGCNERLQEMMRIMCEERGGKLFATDE
RYCIDNGLMIAHAGAEMFRSGTRMPFEESYVTQRFRTDEVLVSWRDD*

RE13621.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10115-PA 347 GF10115-PA 1..347 1..347 1760 94.2 Plus
Dana\GF20469-PA 416 GF20469-PA 35..386 5..340 295 29.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15998-PA 347 GG15998-PA 1..347 1..347 1780 95.7 Plus
Dere\GG18029-PA 409 GG18029-PA 28..364 5..318 265 29.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15886-PA 347 GH15886-PA 1..347 1..347 1670 89 Plus
Dgri\GH12256-PA 405 GH12256-PA 27..361 5..318 285 29.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tcs3-PA 347 CG4933-PA 1..347 1..347 1800 100 Plus
CG14231-PB 409 CG14231-PB 28..362 5..316 274 30.9 Plus
CG14231-PA 409 CG14231-PA 28..362 5..316 274 30.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16537-PA 347 GI16537-PA 1..347 1..347 1648 87.9 Plus
Dmoj\GI11016-PA 405 GI11016-PA 27..361 5..318 282 28.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17856-PA 347 GL17856-PA 1..347 1..347 1603 85.3 Plus
Dper\GL18305-PA 427 GL18305-PA 31..379 5..330 274 28.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18535-PA 347 GA18535-PA 1..347 1..347 1601 85.3 Plus
Dpse\GA12844-PA 427 GA12844-PA 31..379 5..330 279 29.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25628-PA 347 GM25628-PA 1..347 1..347 1819 97.7 Plus
Dsec\GM22713-PA 409 GM22713-PA 28..379 5..340 284 29.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14632-PA 347 GD14632-PA 1..347 1..347 1794 96.5 Plus
Dsim\GD15569-PA 409 GD15569-PA 28..379 5..340 286 29.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12789-PA 347 GJ12789-PA 1..347 1..347 1676 89.9 Plus
Dvir\GJ15615-PA 406 GJ15615-PA 28..362 5..318 281 28.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14080-PA 351 GK14080-PA 1..351 1..347 1570 86.3 Plus
Dwil\GK15909-PA 417 GK15909-PA 26..361 6..318 287 29.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23088-PA 347 GE23088-PA 1..347 1..347 1798 96.8 Plus
Dyak\GE19561-PA 140 GE19561-PA 1..86 1..86 436 96.5 Plus
Dyak\GE17358-PA 409 GE17358-PA 28..379 5..340 283 29.4 Plus