BDGP Sequence Production Resources |
Search the DGRC for RE13652
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 136 |
Well: | 52 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12534-RA |
Protein status: | RE13652.pep: validated full length |
Preliminary Size: | 786 |
Sequenced Size: | 1088 |
Gene | Date | Evidence |
---|---|---|
CG12534 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12534 | 2002-03-20 | Blastp of sequenced clone |
CG12534 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12534 | 2008-04-29 | Release 5.5 accounting |
CG12534 | 2008-08-15 | Release 5.9 accounting |
CG12534 | 2008-12-18 | 5.12 accounting |
1088 bp (1088 high quality bases) assembled on 2002-03-20
GenBank Submission: AY094854
> RE13652.complete AAGATTCTAGAACTACCCACCACACCAACGCTTCTGCTGCGCCGCCAGTC CCACAACTACGGCTACGACTACATCAGCCCCACGCACATCGAACTCAGCC GGGAAGCAACTCGCCTGGTAATTCGCCGTCTGCAGCGCACCGTTCTCCGC CTGATCCGTGACCCGGACTTCATCATGTCTGCCGAGGCGAATCCCGAGAT GGATAAGGAGCACCACGAGTCCCCATTCGCAGCGAACCGCAAGGCCGGTG CCAGCGGCGCCGGCAAACAGGACTCGAACTGCCGCACCTGCAACGATTTC AAGTCGTGGTCCAAGCAGCAACGCCTCATCTCCAACGTGCAGAGCGCCAA GGTGAAGCACATGGCCGCCGCCGAAAAGCTGACCGTCAACGCCGCCGAAG ATCCGCTGCCCCGCGACGACTGCCCGCTGGACAAGGTGAGGCTGGGAATT TCCACCTGGGGACTGCTCCACACCATGGCCGCCTTTTACTCGGACAACCC CACGGACACCGAGAAGCGCGACATGAAGACCTTTTTTGAGGTTCTGTCGC GCCTTTACCCCTGCGAGTTTTGCGCCAAGGACTTTCGCACCGACCTGGAC GTCAACCCCATCAATGTGAACTCCCAAAAGGAGCTAGCACTGTGGCTGTG CAAGTTCCACAACCGAGTGAACGACAAACTGGGCAAACCGCTCTTCGATT GCACCAAGGTGAACGAGAGGTGGCGCGACGGCTGGCTAGACGGCTCCTGC GACTAGGCGCCGCAGCTAACCAGCGCCGAGAAGCCCCGTCTCCCGCCCGT TGCAGGTTGCCATGTTGACCAGACTTTGTCCCACATTTTGCTCGGCTGGC CCACAACTACAACCACGGAACACGGGACTCCTGCTCGGCGGTGTACCGCC GCCAACCCGAAACTGTGCCCTGTTTCTGGCCAGAGGCCATGCCCACCAGT CGGAACCTGCGTCAGCGTGACATTAAATTGAGTTATGTTGTAATAGAGCG ACACATCGAAGGTCCATTGTTAAATGATTTGCTGGCTATGAACTCCATTA GAATATACACATTATGTTGAGGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Alr-RA | 1343 | Alr-RA | 65..1137 | 1..1073 | 5365 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 19638400..19638878 | 594..1072 | 2395 | 100 | Plus |
chrX | 22417052 | chrX | 19637669..19638023 | 1..355 | 1775 | 100 | Plus |
chrX | 22417052 | chrX | 19638097..19638340 | 350..593 | 1220 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 19637669..19638019 | 1..351 | 100 | -> | Plus |
chrX | 19638099..19638340 | 352..593 | 100 | -> | Plus |
chrX | 19638400..19638878 | 594..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12534-RA | 31..786 | 1..756 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Alr-RA | 31..786 | 1..756 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Alr-RA | 31..786 | 1..756 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12534-RA | 31..786 | 1..756 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Alr-RA | 31..786 | 1..756 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12534-RA | 40..1111 | 1..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Alr-RA | 40..1111 | 1..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Alr-RA | 36..1107 | 1..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12534-RA | 40..1111 | 1..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Alr-RA | 36..1107 | 1..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19748958..19749308 | 1..351 | 100 | -> | Plus |
X | 19749388..19749629 | 352..593 | 100 | -> | Plus |
X | 19749689..19750167 | 594..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19748958..19749308 | 1..351 | 100 | -> | Plus |
X | 19749388..19749629 | 352..593 | 100 | -> | Plus |
X | 19749689..19750167 | 594..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19748958..19749308 | 1..351 | 100 | -> | Plus |
X | 19749388..19749629 | 352..593 | 100 | -> | Plus |
X | 19749689..19750167 | 594..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 19643421..19643662 | 352..593 | 100 | -> | Plus |
arm_X | 19642991..19643341 | 1..351 | 100 | -> | Plus |
arm_X | 19643722..19644200 | 594..1072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19757056..19757406 | 1..351 | 100 | -> | Plus |
X | 19757486..19757727 | 352..593 | 100 | -> | Plus |
X | 19757787..19758265 | 594..1072 | 100 | Plus |
Translation from 0 to 755
> RE13652.hyp KILELPTTPTLLLRRQSHNYGYDYISPTHIELSREATRLVIRRLQRTVLR LIRDPDFIMSAEANPEMDKEHHESPFAANRKAGASGAGKQDSNCRTCNDF KSWSKQQRLISNVQSAKVKHMAAAEKLTVNAAEDPLPRDDCPLDKVRLGI STWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRLYPCEFCAKDFRTDLD VNPINVNSQKELALWLCKFHNRVNDKLGKPLFDCTKVNERWRDGWLDGSC D*
Translation from 174 to 755
> RE13652.pep MSAEANPEMDKEHHESPFAANRKAGASGAGKQDSNCRTCNDFKSWSKQQR LISNVQSAKVKHMAAAEKLTVNAAEDPLPRDDCPLDKVRLGISTWGLLHT MAAFYSDNPTDTEKRDMKTFFEVLSRLYPCEFCAKDFRTDLDVNPINVNS QKELALWLCKFHNRVNDKLGKPLFDCTKVNERWRDGWLDGSCD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20218-PA | 275 | GF20218-PA | 103..275 | 15..193 | 839 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19256-PA | 265 | GG19256-PA | 74..265 | 1..193 | 995 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18034-PA | 190 | GH18034-PA | 21..190 | 21..193 | 762 | 79.8 | Plus |
Dgri\GH17696-PA | 288 | GH17696-PA | 14..176 | 15..179 | 611 | 71.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Alr-PA | 261 | CG12534-PA | 69..261 | 1..193 | 1054 | 100 | Plus |
Alr-PB | 266 | CG12534-PB | 74..266 | 1..193 | 1054 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16104-PA | 191 | GI16104-PA | 28..191 | 30..193 | 798 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15019-PA | 185 | GL15019-PA | 1..185 | 1..193 | 801 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11683-PA | 185 | GA11683-PA | 1..185 | 1..193 | 801 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22993-PA | 265 | GM22993-PA | 74..265 | 1..193 | 1017 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17467-PA | 192 | GD17467-PA | 1..192 | 1..193 | 1007 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15753-PA | 190 | GJ15753-PA | 11..190 | 3..193 | 800 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25283-PA | 191 | GK25283-PA | 13..191 | 14..193 | 805 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15875-PA | 267 | GE15875-PA | 74..267 | 1..193 | 1011 | 97.4 | Plus |