RE13829.complete Sequence
1108 bp assembled on 2010-02-22
GenBank Submission: BT120377.1
> RE13829.complete
AGTCCGAAACGAGAACTCATCGAGAGATGCCACACTTGCAGAACATCGAG
CGGGATTTTCCCCTTAACTGGACCTTGAATCCCATTCGGATCTCTAGTAG
TCTCGCCGCAAATACTCTTTCCTTATATCGAAAGATCTCGCAAAACATGT
GGCGCAGTTGTATTCAATTTTGCCATAGTCCCAAGTTCCAGCAATATGTT
AGATTCCTCGAGTCCAGTCTCTGTCAGTTTTAAAGAGCAATGATCCAAGA
AAATGCGTCGTCGCCTCGTCTTCAAAACAGATTGCTTTTGATTTGCAATC
TTGGCACGTTGACGATGCCAAAATTTGTTAGTTGAATTCATTATAGCGAT
ACGCAGAGAGTCAGTCAACGATCTCGTTCCGAGAGGGGGGTTTCGCTTTG
TTGTTTCAGAGTTCTGAAATACAACAATTTGTGGCATTGTAAAGTGCTCG
TAACGCGATTGGGTTTGGGGCATTTCCAAGTCGGCGGCTGGGAAACTACC
CTTGCCGCAGCAATTCCACCATCCAACCTTCAGTAGGGGGAAAACACCTC
GCTTGGAGCTGCAATAAATTCCGGTCGCTATCAAGACGAGCGTTCAGTAA
CGTTTCAAAGCCAGACGCGCTAAGATTGCTAATTCCAAAGCTTCGACCAG
TCGACGAGCATCAGAACATGGAGCACATTCGATTTGTTGACAAAGTCTTT
AGAGCCCTGATCGCCGGCACCCTGCTGCTCCTGATGACCGCCATTTACCG
GGAGGACAACAACTCCGGATCCCACTACATCCATCCAAGACACGCCATGC
AGTAGCTCCATCGTGGTCTACTAAGATCGATTCAACCTAGTCCGATGCAA
TCGAATCTCTCGAAAGTGCGGCACAAAAACCGGTTGTGTATATTGCCGGC
TCGACGACATATCGCCATATCAACTAACTGCACAAATAATGTTATGTTAT
ATGTTAATAATGTTAATGTTAAGAAACATGTGTAATTATCTATAGCTCAT
CCCATCGTAACTAATCTAACTTATGTGCTATAATGTTAATACTTAGAAAT
TAGTTTTAGTGTGAAAATATAATATAAAATGCAATGTATACGAAAAAAAA
AAAAAAAA
RE13829.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30080.c | 1561 | CG30080.c | 460..1553 | 1..1094 | 5455 | 99.9 | Plus |
CG30080.f | 1679 | CG30080.f | 578..1671 | 1..1094 | 5455 | 99.9 | Plus |
CG30080.a | 1617 | CG30080.a | 516..1609 | 1..1094 | 5455 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 11585929..11586812 | 1090..201 | 4265 | 98.9 | Minus |
chr2R | 21145070 | chr2R | 11586880..11587081 | 202..1 | 995 | 99.5 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15698727..15699620 | 1094..201 | 4455 | 99.9 | Minus |
2R | 25286936 | 2R | 15699688..15699889 | 202..1 | 1010 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 15699926..15700819 | 1094..201 | 4455 | 99.8 | Minus |
2R | 25260384 | 2R | 15700887..15701088 | 202..1 | 1010 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 20:53:24 has no hits.
RE13829.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:54:22 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 11585927..11586810 | 203..1092 | 98 | <- | Minus |
chr2R | 11586880..11587081 | 1..202 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:54:29 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42662-RC | 1..138 | 668..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:18 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42662-RB | 1..138 | 668..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:15 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42662-RB | 1..138 | 668..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-22 15:24:54 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30080-RA | 1695..2786 | 1..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:54:29 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42662-RC | 599..1690 | 1..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:18 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42662-RC | 601..1692 | 1..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:15 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42662-RA | 6..1097 | 1..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:22 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15698729..15699618 | 203..1092 | 99 | <- | Minus |
2R | 15699688..15699889 | 1..202 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:22 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15698729..15699618 | 203..1092 | 99 | <- | Minus |
2R | 15699688..15699889 | 1..202 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:22 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15698729..15699618 | 203..1092 | 99 | <- | Minus |
2R | 15699688..15699889 | 1..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:18 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11586234..11587123 | 203..1092 | 99 | <- | Minus |
arm_2R | 11587193..11587394 | 1..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:30:55 Download gff for
RE13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15699928..15700817 | 203..1092 | 99 | <- | Minus |
2R | 15700887..15701088 | 1..202 | 100 | | Minus |
RE13829.hyp Sequence
Translation from 2 to 232
> RE13829.hyp
SETRTHREMPHLQNIERDFPLNWTLNPIRISSSLAANTLSLYRKISQNMW
RSCIQFCHSPKFQQYVRFLESSLCQF*
Sequence RE13829.hyp has no blast hits.
RE13829.pep Sequence
Translation from 667 to 804
> RE13829.pep
MEHIRFVDKVFRALIAGTLLLLMTAIYREDNNSGSHYIHPRHAMQ*
RE13829.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF13374-PA | 55 | GF13374-PA | 9..47 | 7..45 | 152 | 69.2 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42662-PC | 45 | CG42662-PC | 1..45 | 1..45 | 234 | 100 | Plus |
CG42662-PD | 45 | CG42662-PD | 1..45 | 1..45 | 234 | 100 | Plus |
CG42662-PB | 45 | CG42662-PB | 1..45 | 1..45 | 234 | 100 | Plus |
CG42662-PA | 45 | CG42662-PA | 1..45 | 1..45 | 234 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL11856-PA | 51 | GL11856-PA | 11..51 | 5..45 | 143 | 63.4 | Plus |