Clone RE13829 Report

Search the DGRC for RE13829

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:138
Well:29
Vector:pFlc-1
Associated Gene/TranscriptCG42662-RA
Protein status:RE13829.pep: gold
Sequenced Size:1108

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Lost to the ancients 2010-02-11 I'm sure there was a reason

Clone Sequence Records

RE13829.complete Sequence

1108 bp assembled on 2010-02-22

GenBank Submission: BT120377.1

> RE13829.complete
AGTCCGAAACGAGAACTCATCGAGAGATGCCACACTTGCAGAACATCGAG
CGGGATTTTCCCCTTAACTGGACCTTGAATCCCATTCGGATCTCTAGTAG
TCTCGCCGCAAATACTCTTTCCTTATATCGAAAGATCTCGCAAAACATGT
GGCGCAGTTGTATTCAATTTTGCCATAGTCCCAAGTTCCAGCAATATGTT
AGATTCCTCGAGTCCAGTCTCTGTCAGTTTTAAAGAGCAATGATCCAAGA
AAATGCGTCGTCGCCTCGTCTTCAAAACAGATTGCTTTTGATTTGCAATC
TTGGCACGTTGACGATGCCAAAATTTGTTAGTTGAATTCATTATAGCGAT
ACGCAGAGAGTCAGTCAACGATCTCGTTCCGAGAGGGGGGTTTCGCTTTG
TTGTTTCAGAGTTCTGAAATACAACAATTTGTGGCATTGTAAAGTGCTCG
TAACGCGATTGGGTTTGGGGCATTTCCAAGTCGGCGGCTGGGAAACTACC
CTTGCCGCAGCAATTCCACCATCCAACCTTCAGTAGGGGGAAAACACCTC
GCTTGGAGCTGCAATAAATTCCGGTCGCTATCAAGACGAGCGTTCAGTAA
CGTTTCAAAGCCAGACGCGCTAAGATTGCTAATTCCAAAGCTTCGACCAG
TCGACGAGCATCAGAACATGGAGCACATTCGATTTGTTGACAAAGTCTTT
AGAGCCCTGATCGCCGGCACCCTGCTGCTCCTGATGACCGCCATTTACCG
GGAGGACAACAACTCCGGATCCCACTACATCCATCCAAGACACGCCATGC
AGTAGCTCCATCGTGGTCTACTAAGATCGATTCAACCTAGTCCGATGCAA
TCGAATCTCTCGAAAGTGCGGCACAAAAACCGGTTGTGTATATTGCCGGC
TCGACGACATATCGCCATATCAACTAACTGCACAAATAATGTTATGTTAT
ATGTTAATAATGTTAATGTTAAGAAACATGTGTAATTATCTATAGCTCAT
CCCATCGTAACTAATCTAACTTATGTGCTATAATGTTAATACTTAGAAAT
TAGTTTTAGTGTGAAAATATAATATAAAATGCAATGTATACGAAAAAAAA
AAAAAAAA

RE13829.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30080.c 1561 CG30080.c 460..1553 1..1094 5455 99.9 Plus
CG30080.f 1679 CG30080.f 578..1671 1..1094 5455 99.9 Plus
CG30080.a 1617 CG30080.a 516..1609 1..1094 5455 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11585929..11586812 1090..201 4265 98.9 Minus
chr2R 21145070 chr2R 11586880..11587081 202..1 995 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15698727..15699620 1094..201 4455 99.9 Minus
2R 25286936 2R 15699688..15699889 202..1 1010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15699926..15700819 1094..201 4455 99.8 Minus
2R 25260384 2R 15700887..15701088 202..1 1010 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:53:24 has no hits.

RE13829.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:54:22 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11585927..11586810 203..1092 98 <- Minus
chr2R 11586880..11587081 1..202 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:54:29 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG42662-RC 1..138 668..805 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:18 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG42662-RB 1..138 668..805 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:15 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG42662-RB 1..138 668..805 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-22 15:24:54 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG30080-RA 1695..2786 1..1092 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:54:29 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG42662-RC 599..1690 1..1092 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:18 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG42662-RC 601..1692 1..1092 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:15 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG42662-RA 6..1097 1..1092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:22 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15698729..15699618 203..1092 99 <- Minus
2R 15699688..15699889 1..202 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:22 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15698729..15699618 203..1092 99 <- Minus
2R 15699688..15699889 1..202 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:22 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15698729..15699618 203..1092 99 <- Minus
2R 15699688..15699889 1..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:18 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11586234..11587123 203..1092 99 <- Minus
arm_2R 11587193..11587394 1..202 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:30:55 Download gff for RE13829.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15699928..15700817 203..1092 99 <- Minus
2R 15700887..15701088 1..202 100   Minus

RE13829.hyp Sequence

Translation from 2 to 232

> RE13829.hyp
SETRTHREMPHLQNIERDFPLNWTLNPIRISSSLAANTLSLYRKISQNMW
RSCIQFCHSPKFQQYVRFLESSLCQF*
Sequence RE13829.hyp has no blast hits.

RE13829.pep Sequence

Translation from 667 to 804

> RE13829.pep
MEHIRFVDKVFRALIAGTLLLLMTAIYREDNNSGSHYIHPRHAMQ*

RE13829.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13374-PA 55 GF13374-PA 9..47 7..45 152 69.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG42662-PC 45 CG42662-PC 1..45 1..45 234 100 Plus
CG42662-PD 45 CG42662-PD 1..45 1..45 234 100 Plus
CG42662-PB 45 CG42662-PB 1..45 1..45 234 100 Plus
CG42662-PA 45 CG42662-PA 1..45 1..45 234 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11856-PA 51 GL11856-PA 11..51 5..45 143 63.4 Plus