Clone RE13884 Report

Search the DGRC for RE13884

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:138
Well:84
Vector:pFlc-1
Associated Gene/TranscriptHerp-RA
Protein status:RE13884.pep: gold
Preliminary Size:2354
Sequenced Size:2103

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14536 2004-03-31 Blastp of sequenced clone
Herp 2008-04-29 Release 5.5 accounting
Herp 2008-08-15 Release 5.9 accounting
Herp 2008-12-18 5.12 accounting

Clone Sequence Records

RE13884.complete Sequence

2103 bp (2103 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012479

> RE13884.complete
AGTTTTTTTTTTGATCAACTGCGGAACGTTTACTGCGTTTCATAATCAAT
AACTCTGTGCTGCGAGCAAAACACCACAGAACGAACAGCTGTTGAAAACC
AAACAATAGCATAATACCAAATTAAATGTCAAATTCAGAATAAACTATTT
CTCGAAAATACGCAGAGAGCAGAGCGGAGTAGGAAGTGAGAAACAGTGGC
TGCGTAAAAAGTGTCCCCGCTAGCGCAGCAAAAACCCATCACCGATCTTC
GTATCGCGGTCATTAATTAGCAATAGAAAGTTCTCCGATTCGCGGGGTCA
GCCAGATGGAGGAGAACGCCGCCCCACCCGCAGCCGCAACAGCCGCGGGC
TGCGATGCCGCCACCCGTCAAAAGAATCCGGAAACCAGTGTCCGGCTGCT
CATCAAGTCGTCCAACCAGCAGTATGAGGATCTCAATGTGGACTCCGATC
TCTGCTGGACGGTCCAGAGGCTGAAGAAGCACCTATCTCTTATCTATCCT
GGCAAACCGTTAATCCAGGACCAGAAACTTATTTACTCGGGCAAGCTATT
AGATGACTCCCAAAAGATATCTGAGGTGATACGCAGCTACAAGGATGTCT
ACCAACAGCACCACATATTTCACTTGGTGTGTGCCAGCAAGCAAGTGATA
AGGCCGGCTGCCAAAGCCCCCACTGTTCCGCAGAAGGATGCGGTTCCAGC
TGGGCCCGAGGTCACTGGGAATGCAAATGAGCTGCGACAACGTCATGCTC
CACATCAGCAGCAGGCACAGCAGGGCAACGCTGGACCACACGTGACGGGT
GACATCGGTTTGGCCAATCCCTGGACACACTTCTGGCAGCAGAGCCAGGG
AGCAGCACCTGCTGCCAATGCCAGTGCCAGTCCCCATGCTTTGTTCCAGC
AGCAGGCGCTCATCTACAACGCCTGGATGCAGCAGGCTTACGCGCAGTAC
ATGCAGCAGTTGACTCTACGTTCTACGTTGCCCGGTTCGAACCAATCTGG
CTTGCCGCCACCGACTCAACCCCTGTTGCCCTCAGTCCCACTGATTGCTG
GGCGAAACTTCGGGGAGGTACAACAAGTGGCAGGAGCAGCTGCTGCCCCA
GCGGCACAGGTACCTGCTGATCCTCAGATTAATGGAGCGCCGCAGAACAG
AAATTTTCCCAACATTCAGGAGGAACCGGAAATGCACGACTGGCTGGATA
GTTTCTTTAGCTTTACGCGATTGGCCATTTTTGTGACTGTCCTGTACTTT
AACTCCTCAGCGCTGCGTTGTTTACTGGTGGTGCTCATCGCGGGTGCGAT
TTATCTATATCACATTGGTGTCCTTCGACGTCGCCGCGAGCGGAACAATA
ACAACATAAATCGTAACAATAATGCTGGCGATGCGGCCGCCTTTGCTGCA
GTGCAGCAAATTCAGCGCATGATGGATGCGGCCGTGCAGCGGGAGAACAA
CGATCCCCAGGCGGCCAATGAGCCTGGTGCAGTGCCAGCGGCTGGACCTG
CTGCTGCTGGTGAACAAGATGCAATCGATGCACCTCCGGCTGGGGCTCCC
GTTGCTCCAGCATCCGCTGCTAATCCAGAACCGACTGACGTTTCCGCGGA
AGCTGTGGAACCACCAAATGCCAATAATTCTGTGATTTCCGTTGTGCGCA
CCTTTGTCATCACGTTCTTCACCTCGCTGCTGCCCGAGGCGCCGGCGCTC
TAGAGGATCGAACTGTACGTTATACAGAGGGACGTGTTTGACCATCCACA
AACCAGCTTTACAGCTTTACGGCTTTCCTCTTTTAAAACTCCCATAATCA
AACTGTTATTCCGTTTTCCTTTTGAGTTTTGTGCATACCTGAGAATGTAG
CAAAAACAAACAATTTGTTTTACTAGCTGTAATAATCATGTATATTTATT
TCCGAGTGTTAGCCAAGTTACAACATGGTGACTGCTGCCTCAATAGCTCG
TAGAATTTTAGATATCTAAGAACGTACTCTGTTTTTGATGTGAATAGTAG
AATGTTTATAATCTGCACTGCAATCTGTGCTAGAGACGAACCTATGAAAC
CAAGATGCAATTAAAATAAAACGTATGCTTTAACACCAAAAAAAAAAAAA
AAA

RE13884.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RA 2614 Herp-RA 257..2341 8..2092 10425 100 Plus
Herp-RB 2423 Herp-RB 567..2150 509..2092 7920 100 Plus
Herp.a 2345 Herp.a 538..2112 518..2092 7875 100 Plus
Herp.a 2345 Herp.a 37..538 8..509 2510 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7795623..7796403 2087..1307 3815 99.2 Minus
chr2L 23010047 chr2L 7798387..7798888 509..8 2510 100 Minus
chr2L 23010047 chr2L 7797240..7797701 970..509 2310 100 Minus
chr2L 23010047 chr2L 7796474..7796810 1306..970 1640 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796541..7797326 2092..1307 3930 100 Minus
2L 23513712 2L 7799309..7799810 509..8 2510 100 Minus
2L 23513712 2L 7798163..7798624 970..509 2310 100 Minus
2L 23513712 2L 7797397..7797733 1306..970 1685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796541..7797326 2092..1307 3930 100 Minus
2L 23513712 2L 7799309..7799810 509..8 2510 100 Minus
2L 23513712 2L 7798163..7798624 970..509 2310 100 Minus
2L 23513712 2L 7797397..7797733 1306..970 1685 100 Minus
Blast to na_te.dros performed 2019-03-15 16:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 581..722 1437..1578 124 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 1571..1499 122 63 Minus

RE13884.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:19:15 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7795623..7796403 1307..2087 99 <- Minus
chr2L 7796474..7796809 971..1306 99 <- Minus
chr2L 7797240..7797700 510..970 100 <- Minus
chr2L 7798387..7798893 1..509 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:47 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 1..1398 306..1703 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:20 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 1..1398 306..1703 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:59:42 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 1..1398 306..1703 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:08 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 1..1398 306..1703 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:10 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 1..1398 306..1703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:46:20 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 30..2116 1..2087 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:19 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 30..2116 1..2087 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:42 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 31..2117 1..2087 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:08 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 30..2116 1..2087 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:10 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 31..2117 1..2087 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:15 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7796546..7797326 1307..2087 100 <- Minus
2L 7797397..7797732 971..1306 100 <- Minus
2L 7798163..7798623 510..970 100 <- Minus
2L 7799309..7799815 1..509 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:15 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7796546..7797326 1307..2087 100 <- Minus
2L 7797397..7797732 971..1306 100 <- Minus
2L 7798163..7798623 510..970 100 <- Minus
2L 7799309..7799815 1..509 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:15 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7796546..7797326 1307..2087 100 <- Minus
2L 7797397..7797732 971..1306 100 <- Minus
2L 7798163..7798623 510..970 100 <- Minus
2L 7799309..7799815 1..509 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:42 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7796546..7797326 1307..2087 100 <- Minus
arm_2L 7797397..7797732 971..1306 100 <- Minus
arm_2L 7798163..7798623 510..970 100 <- Minus
arm_2L 7799309..7799815 1..509 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:34 Download gff for RE13884.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7798163..7798623 510..970 100 <- Minus
2L 7796546..7797326 1307..2087 100 <- Minus
2L 7797397..7797732 971..1306 100 <- Minus
2L 7799309..7799815 1..509 99   Minus

RE13884.pep Sequence

Translation from 305 to 1702

> RE13884.pep
MEENAAPPAAATAAGCDAATRQKNPETSVRLLIKSSNQQYEDLNVDSDLC
WTVQRLKKHLSLIYPGKPLIQDQKLIYSGKLLDDSQKISEVIRSYKDVYQ
QHHIFHLVCASKQVIRPAAKAPTVPQKDAVPAGPEVTGNANELRQRHAPH
QQQAQQGNAGPHVTGDIGLANPWTHFWQQSQGAAPAANASASPHALFQQQ
ALIYNAWMQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGR
NFGEVQQVAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSF
FSFTRLAIFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNN
INRNNNAGDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAA
AGEQDAIDAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTF
VITFFTSLLPEAPAL*

RE13884.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22841-PA 487 GF22841-PA 42..487 29..465 1149 67.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23506-PA 472 GG23506-PA 1..472 1..465 1619 89.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11381-PA 496 GH11381-PA 45..496 37..465 829 51.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-PC 465 CG14536-PC 1..465 1..465 2411 100 Plus
Herp-PA 465 CG14536-PA 1..465 1..465 2411 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18085-PA 528 GI18085-PA 14..528 8..465 859 49 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18849-PA 478 GL18849-PA 24..478 27..465 969 57.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13061-PA 478 GA13061-PA 24..478 27..465 968 57 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13309-PA 465 GM13309-PA 1..465 1..465 1660 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22467-PA 465 GD22467-PA 1..465 1..465 1653 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16764-PA 491 GJ16764-PA 43..491 28..465 909 53.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15302-PA 482 GK15302-PA 37..482 28..465 919 55.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18333-PA 462 GE18333-PA 1..462 1..465 1514 87 Plus

RE13884.hyp Sequence

Translation from 305 to 1702

> RE13884.hyp
MEENAAPPAAATAAGCDAATRQKNPETSVRLLIKSSNQQYEDLNVDSDLC
WTVQRLKKHLSLIYPGKPLIQDQKLIYSGKLLDDSQKISEVIRSYKDVYQ
QHHIFHLVCASKQVIRPAAKAPTVPQKDAVPAGPEVTGNANELRQRHAPH
QQQAQQGNAGPHVTGDIGLANPWTHFWQQSQGAAPAANASASPHALFQQQ
ALIYNAWMQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGR
NFGEVQQVAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSF
FSFTRLAIFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNN
INRNNNAGDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAA
AGEQDAIDAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTF
VITFFTSLLPEAPAL*

RE13884.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-PC 465 CG14536-PC 1..465 1..465 2411 100 Plus
Herp-PA 465 CG14536-PA 1..465 1..465 2411 100 Plus