BDGP Sequence Production Resources |
Search the DGRC for RE13884
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 138 |
Well: | 84 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Herp-RA |
Protein status: | RE13884.pep: gold |
Preliminary Size: | 2354 |
Sequenced Size: | 2103 |
Gene | Date | Evidence |
---|---|---|
CG14536 | 2004-03-31 | Blastp of sequenced clone |
Herp | 2008-04-29 | Release 5.5 accounting |
Herp | 2008-08-15 | Release 5.9 accounting |
Herp | 2008-12-18 | 5.12 accounting |
2103 bp (2103 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012479
> RE13884.complete AGTTTTTTTTTTGATCAACTGCGGAACGTTTACTGCGTTTCATAATCAAT AACTCTGTGCTGCGAGCAAAACACCACAGAACGAACAGCTGTTGAAAACC AAACAATAGCATAATACCAAATTAAATGTCAAATTCAGAATAAACTATTT CTCGAAAATACGCAGAGAGCAGAGCGGAGTAGGAAGTGAGAAACAGTGGC TGCGTAAAAAGTGTCCCCGCTAGCGCAGCAAAAACCCATCACCGATCTTC GTATCGCGGTCATTAATTAGCAATAGAAAGTTCTCCGATTCGCGGGGTCA GCCAGATGGAGGAGAACGCCGCCCCACCCGCAGCCGCAACAGCCGCGGGC TGCGATGCCGCCACCCGTCAAAAGAATCCGGAAACCAGTGTCCGGCTGCT CATCAAGTCGTCCAACCAGCAGTATGAGGATCTCAATGTGGACTCCGATC TCTGCTGGACGGTCCAGAGGCTGAAGAAGCACCTATCTCTTATCTATCCT GGCAAACCGTTAATCCAGGACCAGAAACTTATTTACTCGGGCAAGCTATT AGATGACTCCCAAAAGATATCTGAGGTGATACGCAGCTACAAGGATGTCT ACCAACAGCACCACATATTTCACTTGGTGTGTGCCAGCAAGCAAGTGATA AGGCCGGCTGCCAAAGCCCCCACTGTTCCGCAGAAGGATGCGGTTCCAGC TGGGCCCGAGGTCACTGGGAATGCAAATGAGCTGCGACAACGTCATGCTC CACATCAGCAGCAGGCACAGCAGGGCAACGCTGGACCACACGTGACGGGT GACATCGGTTTGGCCAATCCCTGGACACACTTCTGGCAGCAGAGCCAGGG AGCAGCACCTGCTGCCAATGCCAGTGCCAGTCCCCATGCTTTGTTCCAGC AGCAGGCGCTCATCTACAACGCCTGGATGCAGCAGGCTTACGCGCAGTAC ATGCAGCAGTTGACTCTACGTTCTACGTTGCCCGGTTCGAACCAATCTGG CTTGCCGCCACCGACTCAACCCCTGTTGCCCTCAGTCCCACTGATTGCTG GGCGAAACTTCGGGGAGGTACAACAAGTGGCAGGAGCAGCTGCTGCCCCA GCGGCACAGGTACCTGCTGATCCTCAGATTAATGGAGCGCCGCAGAACAG AAATTTTCCCAACATTCAGGAGGAACCGGAAATGCACGACTGGCTGGATA GTTTCTTTAGCTTTACGCGATTGGCCATTTTTGTGACTGTCCTGTACTTT AACTCCTCAGCGCTGCGTTGTTTACTGGTGGTGCTCATCGCGGGTGCGAT TTATCTATATCACATTGGTGTCCTTCGACGTCGCCGCGAGCGGAACAATA ACAACATAAATCGTAACAATAATGCTGGCGATGCGGCCGCCTTTGCTGCA GTGCAGCAAATTCAGCGCATGATGGATGCGGCCGTGCAGCGGGAGAACAA CGATCCCCAGGCGGCCAATGAGCCTGGTGCAGTGCCAGCGGCTGGACCTG CTGCTGCTGGTGAACAAGATGCAATCGATGCACCTCCGGCTGGGGCTCCC GTTGCTCCAGCATCCGCTGCTAATCCAGAACCGACTGACGTTTCCGCGGA AGCTGTGGAACCACCAAATGCCAATAATTCTGTGATTTCCGTTGTGCGCA CCTTTGTCATCACGTTCTTCACCTCGCTGCTGCCCGAGGCGCCGGCGCTC TAGAGGATCGAACTGTACGTTATACAGAGGGACGTGTTTGACCATCCACA AACCAGCTTTACAGCTTTACGGCTTTCCTCTTTTAAAACTCCCATAATCA AACTGTTATTCCGTTTTCCTTTTGAGTTTTGTGCATACCTGAGAATGTAG CAAAAACAAACAATTTGTTTTACTAGCTGTAATAATCATGTATATTTATT TCCGAGTGTTAGCCAAGTTACAACATGGTGACTGCTGCCTCAATAGCTCG TAGAATTTTAGATATCTAAGAACGTACTCTGTTTTTGATGTGAATAGTAG AATGTTTATAATCTGCACTGCAATCTGTGCTAGAGACGAACCTATGAAAC CAAGATGCAATTAAAATAAAACGTATGCTTTAACACCAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Herp-RA | 2614 | Herp-RA | 257..2341 | 8..2092 | 10425 | 100 | Plus |
Herp-RB | 2423 | Herp-RB | 567..2150 | 509..2092 | 7920 | 100 | Plus |
Herp.a | 2345 | Herp.a | 538..2112 | 518..2092 | 7875 | 100 | Plus |
Herp.a | 2345 | Herp.a | 37..538 | 8..509 | 2510 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 7795623..7796403 | 2087..1307 | 3815 | 99.2 | Minus |
chr2L | 23010047 | chr2L | 7798387..7798888 | 509..8 | 2510 | 100 | Minus |
chr2L | 23010047 | chr2L | 7797240..7797701 | 970..509 | 2310 | 100 | Minus |
chr2L | 23010047 | chr2L | 7796474..7796810 | 1306..970 | 1640 | 99.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7796541..7797326 | 2092..1307 | 3930 | 100 | Minus |
2L | 23513712 | 2L | 7799309..7799810 | 509..8 | 2510 | 100 | Minus |
2L | 23513712 | 2L | 7798163..7798624 | 970..509 | 2310 | 100 | Minus |
2L | 23513712 | 2L | 7797397..7797733 | 1306..970 | 1685 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7796541..7797326 | 2092..1307 | 3930 | 100 | Minus |
2L | 23513712 | 2L | 7799309..7799810 | 509..8 | 2510 | 100 | Minus |
2L | 23513712 | 2L | 7798163..7798624 | 970..509 | 2310 | 100 | Minus |
2L | 23513712 | 2L | 7797397..7797733 | 1306..970 | 1685 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 7795623..7796403 | 1307..2087 | 99 | <- | Minus |
chr2L | 7796474..7796809 | 971..1306 | 99 | <- | Minus |
chr2L | 7797240..7797700 | 510..970 | 100 | <- | Minus |
chr2L | 7798387..7798893 | 1..509 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 1..1398 | 306..1703 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 1..1398 | 306..1703 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 1..1398 | 306..1703 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 1..1398 | 306..1703 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 1..1398 | 306..1703 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 30..2116 | 1..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 30..2116 | 1..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 31..2117 | 1..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 30..2116 | 1..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Herp-RA | 31..2117 | 1..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7796546..7797326 | 1307..2087 | 100 | <- | Minus |
2L | 7797397..7797732 | 971..1306 | 100 | <- | Minus |
2L | 7798163..7798623 | 510..970 | 100 | <- | Minus |
2L | 7799309..7799815 | 1..509 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7796546..7797326 | 1307..2087 | 100 | <- | Minus |
2L | 7797397..7797732 | 971..1306 | 100 | <- | Minus |
2L | 7798163..7798623 | 510..970 | 100 | <- | Minus |
2L | 7799309..7799815 | 1..509 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7796546..7797326 | 1307..2087 | 100 | <- | Minus |
2L | 7797397..7797732 | 971..1306 | 100 | <- | Minus |
2L | 7798163..7798623 | 510..970 | 100 | <- | Minus |
2L | 7799309..7799815 | 1..509 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 7796546..7797326 | 1307..2087 | 100 | <- | Minus |
arm_2L | 7797397..7797732 | 971..1306 | 100 | <- | Minus |
arm_2L | 7798163..7798623 | 510..970 | 100 | <- | Minus |
arm_2L | 7799309..7799815 | 1..509 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7798163..7798623 | 510..970 | 100 | <- | Minus |
2L | 7796546..7797326 | 1307..2087 | 100 | <- | Minus |
2L | 7797397..7797732 | 971..1306 | 100 | <- | Minus |
2L | 7799309..7799815 | 1..509 | 99 | Minus |
Translation from 305 to 1702
> RE13884.pep MEENAAPPAAATAAGCDAATRQKNPETSVRLLIKSSNQQYEDLNVDSDLC WTVQRLKKHLSLIYPGKPLIQDQKLIYSGKLLDDSQKISEVIRSYKDVYQ QHHIFHLVCASKQVIRPAAKAPTVPQKDAVPAGPEVTGNANELRQRHAPH QQQAQQGNAGPHVTGDIGLANPWTHFWQQSQGAAPAANASASPHALFQQQ ALIYNAWMQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGR NFGEVQQVAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSF FSFTRLAIFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNN INRNNNAGDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAA AGEQDAIDAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTF VITFFTSLLPEAPAL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22841-PA | 487 | GF22841-PA | 42..487 | 29..465 | 1149 | 67.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23506-PA | 472 | GG23506-PA | 1..472 | 1..465 | 1619 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11381-PA | 496 | GH11381-PA | 45..496 | 37..465 | 829 | 51.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Herp-PC | 465 | CG14536-PC | 1..465 | 1..465 | 2411 | 100 | Plus |
Herp-PA | 465 | CG14536-PA | 1..465 | 1..465 | 2411 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18085-PA | 528 | GI18085-PA | 14..528 | 8..465 | 859 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18849-PA | 478 | GL18849-PA | 24..478 | 27..465 | 969 | 57.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13061-PA | 478 | GA13061-PA | 24..478 | 27..465 | 968 | 57 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13309-PA | 465 | GM13309-PA | 1..465 | 1..465 | 1660 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22467-PA | 465 | GD22467-PA | 1..465 | 1..465 | 1653 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16764-PA | 491 | GJ16764-PA | 43..491 | 28..465 | 909 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15302-PA | 482 | GK15302-PA | 37..482 | 28..465 | 919 | 55.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18333-PA | 462 | GE18333-PA | 1..462 | 1..465 | 1514 | 87 | Plus |
Translation from 305 to 1702
> RE13884.hyp MEENAAPPAAATAAGCDAATRQKNPETSVRLLIKSSNQQYEDLNVDSDLC WTVQRLKKHLSLIYPGKPLIQDQKLIYSGKLLDDSQKISEVIRSYKDVYQ QHHIFHLVCASKQVIRPAAKAPTVPQKDAVPAGPEVTGNANELRQRHAPH QQQAQQGNAGPHVTGDIGLANPWTHFWQQSQGAAPAANASASPHALFQQQ ALIYNAWMQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGR NFGEVQQVAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSF FSFTRLAIFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNN INRNNNAGDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAA AGEQDAIDAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTF VITFFTSLLPEAPAL*