BDGP Sequence Production Resources |
Search the DGRC for RE13893
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 138 |
Well: | 93 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Osi20-RA |
Protein status: | RE13893.pep: gold |
Preliminary Size: | 843 |
Sequenced Size: | 1275 |
Gene | Date | Evidence |
---|---|---|
CG15188 | 2001-12-14 | Blastp of sequenced clone |
CG15188 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15188 | 2003-01-01 | Sim4 clustering to Release 3 |
Osi20 | 2008-04-29 | Release 5.5 accounting |
Osi20 | 2008-08-15 | Release 5.9 accounting |
Osi20 | 2008-12-18 | 5.12 accounting |
1275 bp (1275 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071052
> RE13893.complete CATTGTCGCCGCATCGACTCCACAGTGAACACTACGCGCTCTGGTAGTGT CAGTAATATCTAGTTGTATCTTTTTCGATTGGAAACACAATGGCTTTCCG CTCCACGTCCTTGCTCGCGTTCGGTTGTGCGCTGCTGCTGGTGGCCTCCA CATCCGTGTCCGGTGCTGCCATCGAGAACGCGGTGACCCCGCGGATCCAC AGCTCCGACGAGCTGATCTCGACAATTGTGGATAAGTGCTTCCATGCCAA TGCGATGCATTGCCTGAAGGAGAAGGTGCTCACCTACCTGGACACGGTAG CCAATGTGGAGGAGGAGGTCAGCGGACGCGCCCTGGGTGACGATGTAATC GACAAGGTCATTGTGGACCGCCTGGGCCGCATTCTGAACACCAACGAGAT GAGGTTGCAGCTGCCACAGACCTTCTTCGCTGGTTCCGTGGTGACCTATC GCTCGGATCGCGGTTTTGATCTGGAGTTGCCCAAGGATGAGGGTCGCGCT GAGAAGAAGAACAAGGACAAGCTGTTCCTGCCCCTGCTGCTGCTGATGAA GTTCAAGCTGAAGGTGATCATGCCCATCTTGCTGGCTCTGATCGGTCTGA AGGCCACCAAGGCTCTGATTCTGTCCAAGATTGCCATCAAGCTGGTGCTG GGCTTCCTGATCTACAACCTTATCCAGAAGTTGGGAGGCATGAAGATGAA CATGGTGCCCATGCCCGCCCCAGTTCCGGCCAGCGAATACGGAGTGCCCA GCACCACCGCCTCATCCTACGATCCCAGCAGCTGGGAGCCCATGAGCGGA GGTCCCTATGCCCGTTGGGACTCGCAGAACCTGGCCTACAGCTCGTACCA TCCTAGCAGCTCGTCGTCCTACTCCTCGGGATCCTCGTCGGGATCCTCGG GTTCTTCGTCCAGCTACAGCTCGTCCTCCTAAACGGGGAAAGTCATTCGC CCAATTGTACATACCAAGGAATTTGCGATCCTTCCCAGGAAGGATGGCTG CGAGTCACACAGACCAAATGGAACCGGAACCTGCCCCAGGCCATAATTGT AGTTGTTAGGGTTAGGAACGCGAGAGTTTTAGCCATTCTTCAGCTCTAAC CACATCCCCACTTAGCCTGATTTTACCATCTTCTTCATACCATCTTCTTT CTCATTGACTCTTCGTCCTTTTGCCTTCGTTTCTTTGTCACAAAACGACC AAAAACTGAATTTAATTAATATTTATTTAATTTATTAAAAATGCAAAAAT TTAAAACACTAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Osi20-RA | 1628 | Osi20-RA | 100..1357 | 1..1258 | 6290 | 100 | Plus |
Osi20.c | 1720 | Osi20.c | 461..1718 | 1..1258 | 6290 | 100 | Plus |
Osi20.a | 1274 | Osi20.a | 506..1272 | 492..1258 | 3835 | 100 | Plus |
Osi20.a | 1274 | Osi20.a | 3..494 | 1..492 | 2460 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1581 | 594..521 | 138 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2478 | 592..521 | 126 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2370 | 591..521 | 121 | 63.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2655 | 618..521 | 118 | 59.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2375 | 584..519 | 114 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6800 | 584..521 | 113 | 64.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 2165776..2166267 | 1..492 | 100 | -> | Plus |
chr3R | 2166334..2167100 | 493..1260 | 95 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi20-RA | 1..843 | 90..932 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi20-RA | 1..843 | 90..932 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi20-RA | 1..843 | 90..932 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi20-RA | 1..843 | 90..932 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi20-RA | 1..843 | 90..932 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi20-RA | 3..1261 | 1..1260 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi20-RA | 3..1261 | 1..1260 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi20-RA | 5..1263 | 1..1260 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi20-RA | 3..1261 | 1..1260 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi20-RA | 5..1263 | 1..1260 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6340099..6340590 | 1..492 | 100 | -> | Plus |
3R | 6340657..6341423 | 493..1260 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6340099..6340590 | 1..492 | 100 | -> | Plus |
3R | 6340657..6341423 | 493..1260 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6340099..6340590 | 1..492 | 100 | -> | Plus |
3R | 6340657..6341423 | 493..1260 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 2165821..2166312 | 1..492 | 100 | -> | Plus |
arm_3R | 2166379..2167145 | 493..1260 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6080930..6081421 | 1..492 | 100 | -> | Plus |
3R | 6081488..6082254 | 493..1260 | 99 | Plus |
Translation from 89 to 931
> RE13893.pep MAFRSTSLLAFGCALLLVASTSVSGAAIENAVTPRIHSSDELISTIVDKC FHANAMHCLKEKVLTYLDTVANVEEEVSGRALGDDVIDKVIVDRLGRILN TNEMRLQLPQTFFAGSVVTYRSDRGFDLELPKDEGRAEKKNKDKLFLPLL LLMKFKLKVIMPILLALIGLKATKALILSKIAIKLVLGFLIYNLIQKLGG MKMNMVPMPAPVPASEYGVPSTTASSYDPSSWEPMSGGPYARWDSQNLAY SSYHPSSSSSYSSGSSSGSSGSSSSYSSSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16393-PA | 280 | GF16393-PA | 1..250 | 1..249 | 1104 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13313-PA | 280 | GG13313-PA | 1..280 | 1..280 | 1450 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14037-PA | 280 | GH14037-PA | 1..249 | 1..249 | 1015 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Osi20-PA | 280 | CG15188-PA | 1..280 | 1..280 | 1401 | 100 | Plus |
Osi9-PA | 233 | CG15592-PA | 1..181 | 8..185 | 175 | 23.9 | Plus |
Osi7-PA | 288 | CG1153-PA | 6..264 | 9..279 | 172 | 21.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24411-PA | 277 | GI24411-PA | 1..247 | 1..249 | 981 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24074-PA | 276 | GL24074-PA | 1..245 | 1..249 | 1075 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13556-PA | 276 | GA13556-PA | 1..245 | 1..249 | 1075 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10884-PA | 280 | GM10884-PA | 1..280 | 1..280 | 1462 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19863-PA | 280 | GD19863-PA | 1..280 | 1..280 | 1462 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14269-PA | 277 | GJ14269-PA | 1..247 | 1..249 | 1057 | 87.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13053-PA | 279 | GK13053-PA | 1..247 | 1..249 | 1097 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10208-PA | 281 | GE10208-PA | 1..281 | 1..280 | 1448 | 99.3 | Plus |
Translation from 89 to 931
> RE13893.hyp MAFRSTSLLAFGCALLLVASTSVSGAAIENAVTPRIHSSDELISTIVDKC FHANAMHCLKEKVLTYLDTVANVEEEVSGRALGDDVIDKVIVDRLGRILN TNEMRLQLPQTFFAGSVVTYRSDRGFDLELPKDEGRAEKKNKDKLFLPLL LLMKFKLKVIMPILLALIGLKATKALILSKIAIKLVLGFLIYNLIQKLGG MKMNMVPMPAPVPASEYGVPSTTASSYDPSSWEPMSGGPYARWDSQNLAY SSYHPSSSSSYSSGSSSGSSGSSSSYSSSS*