Clone RE13973 Report

Search the DGRC for RE13973

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:139
Well:73
Vector:pFlc-1
Associated Gene/TranscriptCG1492-RA
Protein status:RE13973.pep: gold
Preliminary Size:1839
Sequenced Size:2299

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1492 2001-12-17 Blastp of sequenced clone
CG1492 2002-01-01 Sim4 clustering to Release 2
CG1492 2003-01-01 Sim4 clustering to Release 3
CG1492 2008-04-29 Release 5.5 accounting
CG1492 2008-08-15 Release 5.9 accounting
CG1492 2008-12-18 5.12 accounting

Clone Sequence Records

RE13973.complete Sequence

2299 bp (2299 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071056

> RE13973.complete
AGTATGACCACTAGAAAACAGCAGAGAACAGCTGTTTTTTGAAATGAAAA
GGATATGGATATTTCCATTTGAACTGCAATGGTGCGGCAATGGGGTTGAG
AACAATGTAAATCTAGGTGCTAGCGATGTACATTAGGATAGGATTGAATA
GTTTGATATCCGTGGTGATTGTCATCCTGGTGGCAGTCTATATCTACCGG
TATCCGGACGGAAATGCTGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAA
TCCGGAGGATCCACTGCCGCCCTCCAATTCGCCGCTCCATCGATTCTCCC
GGGCGGCCATTTGCTCCGACAGCGATGTGTGCAGCCAATTGGCCAAAAAA
GTCCTGGAGAATGGAGGAAGTGCTGTGGATGGCGCCTTGGCTGCTCTCAT
TTGCAACGGACTCATCGGGATGCAGAGCATGGGCATCGGTGGCGGCATGG
TGATGAATGTTTATGTGGCCAAGGAGAACAAATCCTACAGCATTCTGGCC
AGGGAAATGGCGCCGCTGGCATTGCGTGCGGATAACTTCTCGTCATTTCG
CGATGAGCAGGATTTCAAGAGATCCGGATGGTCCATTGCCGTGCCAGCTG
AATTGGCCGGTTATGCGGTGGCCCACCAGAGATTCGGGCGGCTAAAGTGG
AAGGATTTGGTGCTGCCAACTTTGGAATTGTGTCGTCGTGGCTATCGATT
GTATAAGCACCAGTATGATGCGCTCATACTCAATCAGGACATGATCAGGG
CCGATTCCGGCCTACGCCGGATGTTCATCGATCCCGACACCGGGCGCTTC
TGGCCATTGGGTCATCTCATTCGCCCTGCGGCTCAATTGTGCAACACCTA
CGATCGGTTGGCCAACGAGGGACCACTCAGTTTCTACCGCGGATCTATCG
CCGATGATCTGCTGGCCGACTTGAAGGACGCGGGCAGTGCAATAACTAAG
GAAGACCTCAACCAAGCGCACGCCAAATTGAGTAGCGCCATTGTGATGCC
ACTGGATGAGTATGATCTCCATTTGACTCCTCCACCTGGAAGTGGTCACG
TTCTCGGCTTCATAATGAACATACTAAAGGAGTTCCGGGCGGAATTCTCA
AGAGCCGGAACTATGAGCCCACGTCAAATCCATTTGATGGTCGAGGCAAT
GAAGTTTGGATTCGTCAAGCGATGGCAACTGGATGAATCCGCGAGCGAAG
AGCTTTTGTCGAATTTGACCAGTCATGAATTGGCAAAATCCGTGGCCAGG
CAAATTAACCACACACACACCTTTAACCGACCAGAGTTCTATGGAGCTTC
ACCTGGAATTCAAATACGTGATGAGCACGGCACAGCGCACACTTCAGTGC
TCCATGGAAACGATGCAGTTTCAGTGACAAGCTCCATCAATTTCTATTTT
GGCAGTGGACGAACTGGCAGGCGCACAGGTGTCATCTTTAACAATGCCAT
GTCGGATTTCTCCATCGAACAGCTCAAGAACTACTTCGATCTGCCCTTCG
TGCCTGGCACGAATGGTGTAGCTCCTGCCGCCCGTCCCATGTCCTCCATG
TGTCCAGTGATTGTCACGGAACGCGCCACTGGCAACGTTCGCTTGGTTGT
GGGTGCCGCTGGCGGTACCAAAATAATCTCTGCCCTCTCTCCCCTCCTCG
TGCGCATCCTGTGGCAGGAGGCAAGCATCAAGGCCGCCATCGATGCCAGC
CGCATCCATCATCAAATGCTGCCCAATGTTCTGCTCTACGAGTATGGACT
ACGGCAGAGCTATGTGGATAGCTTGGCGGAGAGGGGACATCGATGCGAGC
GTTATGAGAACCGCGGTTCCGTCATCTGTGGAATCGCTCAAGCTAACGAC
ACCATCTGGGTGAACTCGGATTTTCGGAAGCCAGGTGGAGTTAGTGGATT
TTAAAAAAGTCGAATTCTTTTCACAAACTATACCAAACATATAGTATTTA
CACAAAGTATTAATTATGTTTTCCAGCAGAAACTTATTCAAACACGTTAA
TTGCTCAAATATGAATGAATTAACAAATTATTTTTCAATAAGTTAGTATT
TAGTTTTTTTTTAGATGCTATCGCACGAAAGCAAACAGTATTTGTTTTTA
AACGTTGTGTTACTTTAATGGTACTTAGATATAAAAAATAATTTATTTGT
AATTTGTATCAGTTGCTAAAAATAATTTAAGTAGTATGTTGAATTTAAGT
TACAATATATCCCTACACAGACGTGTAAAAGTGTTCTCGCTTGCGGTGGC
AACAAATAAATAACGTTATGTATAAGAATGTTGCAACAAAAAAAAAAAA

RE13973.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-RA 2367 CG1492-RA 79..2367 1..2289 11445 100 Plus
CG1806-RA 1696 CG1806-RA 1470..1696 2289..2063 1135 100 Minus
CG1806.a 1583 CG1806.a 1385..1583 2289..2091 995 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11902029..11903015 1202..216 4935 100 Minus
chrX 22417052 chrX 11900794..11901682 2287..1397 4330 99.3 Minus
chrX 22417052 chrX 11903071..11903290 220..1 1085 99.5 Minus
chrX 22417052 chrX 11901754..11901949 1396..1201 965 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12010948..12011934 1202..216 4935 100 Minus
X 23542271 X 12009709..12010601 2289..1397 4465 100 Minus
X 23542271 X 12011990..12012209 220..1 1085 99.5 Minus
X 23542271 X 12010673..12010868 1396..1201 980 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12019046..12020032 1202..216 4935 100 Minus
X 23527363 X 12017807..12018699 2289..1397 4465 100 Minus
X 23527363 X 12020088..12020307 220..1 1085 99.5 Minus
X 23527363 X 12018771..12018966 1396..1201 980 100 Minus
Blast to na_te.dros performed 2019-03-16 12:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 4112..4169 2055..1997 121 71.7 Minus

RE13973.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:42:35 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11900794..11901682 1397..2287 99 <- Minus
chrX 11901754..11901947 1203..1396 99 <- Minus
chrX 11902029..11903014 217..1202 100 <- Minus
chrX 11903075..11903290 1..216 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:54 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1..1779 126..1904 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:40 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1..1779 126..1904 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:37:45 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1..1779 126..1904 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:43 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1..1779 126..1904 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:57 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1..1779 126..1904 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:25:53 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1..2287 1..2287 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:40 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1..2287 1..2287 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:45 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 3..2000 1..1998 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:45 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1..2287 1..2287 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:57 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RB 3..2289 1..2287 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:35 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
X 12009711..12010601 1397..2287 100 <- Minus
X 12010673..12010866 1203..1396 100 <- Minus
X 12010948..12011933 217..1202 100 <- Minus
X 12011994..12012209 1..216 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:35 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
X 12009711..12010601 1397..2287 100 <- Minus
X 12010673..12010866 1203..1396 100 <- Minus
X 12010948..12011933 217..1202 100 <- Minus
X 12011994..12012209 1..216 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:35 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
X 12009711..12010601 1397..2287 100 <- Minus
X 12010673..12010866 1203..1396 100 <- Minus
X 12010948..12011933 217..1202 100 <- Minus
X 12011994..12012209 1..216 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:45 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11904706..11904899 1203..1396 100 <- Minus
arm_X 11906027..11906242 1..216 100   Minus
arm_X 11904981..11905966 217..1202 100 <- Minus
arm_X 11903744..11904634 1397..2287 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:37 Download gff for RE13973.complete
Subject Subject Range Query Range Percent Splice Strand
X 12017809..12018699 1397..2287 100 <- Minus
X 12018771..12018964 1203..1396 100 <- Minus
X 12019046..12020031 217..1202 100 <- Minus
X 12020092..12020307 1..216 100   Minus

RE13973.pep Sequence

Translation from 125 to 1903

> RE13973.pep
MYIRIGLNSLISVVIVILVAVYIYRYPDGNAGKKKASRRPPNPEDPLPPS
NSPLHRFSRAAICSDSDVCSQLAKKVLENGGSAVDGALAALICNGLIGMQ
SMGIGGGMVMNVYVAKENKSYSILAREMAPLALRADNFSSFRDEQDFKRS
GWSIAVPAELAGYAVAHQRFGRLKWKDLVLPTLELCRRGYRLYKHQYDAL
ILNQDMIRADSGLRRMFIDPDTGRFWPLGHLIRPAAQLCNTYDRLANEGP
LSFYRGSIADDLLADLKDAGSAITKEDLNQAHAKLSSAIVMPLDEYDLHL
TPPPGSGHVLGFIMNILKEFRAEFSRAGTMSPRQIHLMVEAMKFGFVKRW
QLDESASEELLSNLTSHELAKSVARQINHTHTFNRPEFYGASPGIQIRDE
HGTAHTSVLHGNDAVSVTSSINFYFGSGRTGRRTGVIFNNAMSDFSIEQL
KNYFDLPFVPGTNGVAPAARPMSSMCPVIVTERATGNVRLVVGAAGGTKI
ISALSPLLVRILWQEASIKAAIDASRIHHQMLPNVLLYEYGLRQSYVDSL
AERGHRCERYENRGSVICGIAQANDTIWVNSDFRKPGGVSGF*

RE13973.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19288-PA 588 GF19288-PA 1..588 1..592 2128 67.9 Plus
Dana\GF21750-PA 689 GF21750-PA 149..689 52..592 1026 40.6 Plus
Dana\GF22409-PA 579 GF22409-PA 37..533 56..555 695 33.7 Plus
Dana\GF22184-PA 670 GF22184-PA 142..629 60..556 681 34.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19568-PA 592 GG19568-PA 1..592 1..592 2881 92.4 Plus
Dere\GG19084-PA 727 GG19084-PA 186..727 51..592 1022 41.3 Plus
Dere\GG18112-PA 603 GG18112-PA 62..561 57..561 701 34 Plus
Dere\GG19988-PA 585 GG19988-PA 54..547 60..562 665 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24228-PA 586 GH24228-PA 25..586 31..592 1950 65.1 Plus
Dgri\GH11925-PA 825 GH11925-PA 282..825 51..592 1005 40.6 Plus
Dgri\GH12335-PA 579 GH12335-PA 37..534 56..556 728 33.9 Plus
Dgri\GH12038-PA 570 GH12038-PA 39..529 60..558 714 32.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-PB 592 CG1492-PB 1..592 1..592 3072 100 Plus
CG1492-PA 592 CG1492-PA 1..592 1..592 3072 100 Plus
CG4829-PD 687 CG4829-PD 146..687 51..592 967 40.2 Plus
CG4829-PE 732 CG4829-PE 191..732 51..592 967 40.2 Plus
CG4829-PC 777 CG4829-PC 236..777 51..592 967 40.2 Plus
CG4829-PA 777 CG4829-PA 236..777 51..592 967 40.2 Plus
CG4829-PB 822 CG4829-PB 281..822 51..592 967 40.2 Plus
CG4829-PF 491 CG4829-PF 1..491 102..592 844 39.5 Plus
Ggt-1-PB 579 CG6461-PB 42..537 61..561 704 35.2 Plus
Ggt-1-PA 579 CG6461-PA 42..537 61..561 704 35.2 Plus
CG17636-PA 571 CG17636-PA 41..526 61..555 646 32.6 Plus
CG17636-PC 585 CG17636-PC 55..540 61..555 646 32.6 Plus
CG17636-PB 501 CG17636-PB 1..456 91..555 587 32.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15734-PA 563 GI15734-PA 2..563 31..592 2039 66.9 Plus
Dmoj\GI15346-PA 822 GI15346-PA 280..822 51..592 1022 40.6 Plus
Dmoj\GI15585-PA 561 GI15585-PA 19..524 56..564 718 32.8 Plus
Dmoj\GI16193-PA 572 GI16193-PA 40..529 60..557 695 33.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15840-PA 591 GL15840-PA 1..591 1..592 2295 70.3 Plus
Dper\GL16517-PA 869 GL16517-PA 328..869 51..592 1028 42 Plus
Dper\GL27026-PA 579 GL27026-PA 31..555 47..575 673 33.6 Plus
Dper\GL13355-PA 566 GL13355-PA 36..526 60..560 639 31.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13353-PA 591 GA13353-PA 8..591 8..592 2270 70.3 Plus
Dpse\GA23076-PA 791 GA23076-PA 250..791 51..592 1044 42.7 Plus
Dpse\GA19613-PA 579 GA19613-PA 31..555 47..575 673 33.6 Plus
Dpse\GA22840-PB 584 GA22840-PB 54..544 60..560 647 32 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13229-PA 592 GM13229-PA 1..592 1..592 2910 93.6 Plus
Dsec\GM13472-PA 687 GM13472-PA 146..687 51..592 1005 39.6 Plus
Dsec\GM22803-PA 579 GM22803-PA 38..537 57..561 725 34.9 Plus
Dsec\GM11114-PA 542 GM11114-PA 49..526 60..546 658 32.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15947-PA 592 GD15947-PA 1..592 1..592 2989 94.1 Plus
Dsim\GD17313-PA 1057 GD17313-PA 198..694 76..572 926 40 Plus
Dsim\GD16490-PA 580 GD16490-PA 49..542 60..562 668 32.3 Plus
Dsim\GD24475-PA 286 GD24475-PA 15..285 155..422 292 31 Plus
Dsim\GD15628-PA 158 GD15628-PA 1..116 442..561 236 42.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15262-PA 565 GJ15262-PA 5..565 32..592 1955 64.3 Plus
Dvir\GJ19318-PA 829 GJ19318-PA 263..829 31..592 1065 40.3 Plus
Dvir\GJ15189-PA 561 GJ15189-PA 19..515 56..555 706 33.3 Plus
Dvir\GJ16681-PA 545 GJ16681-PA 41..501 61..556 629 30.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24982-PA 570 GK24982-PA 10..570 34..592 1936 64.9 Plus
Dwil\GK25371-PA 820 GK25371-PA 281..820 52..592 1037 42.3 Plus
Dwil\GK16403-PA 580 GK16403-PA 37..534 55..555 679 33.3 Plus
Dwil\GK15427-PA 570 GK15427-PA 40..529 60..558 634 31.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16728-PA 593 GE16728-PA 1..593 1..592 2828 90.9 Plus
Dyak\GE17630-PA 732 GE17630-PA 191..732 51..592 989 40.2 Plus
Dyak\GE15517-PA 583 GE15517-PA 46..541 61..561 707 35.1 Plus
Dyak\GE11521-PA 516 GE11521-PA 1..471 76..555 650 33.2 Plus

RE13973.hyp Sequence

Translation from 125 to 1903

> RE13973.hyp
MYIRIGLNSLISVVIVILVAVYIYRYPDGNAGKKKASRRPPNPEDPLPPS
NSPLHRFSRAAICSDSDVCSQLAKKVLENGGSAVDGALAALICNGLIGMQ
SMGIGGGMVMNVYVAKENKSYSILAREMAPLALRADNFSSFRDEQDFKRS
GWSIAVPAELAGYAVAHQRFGRLKWKDLVLPTLELCRRGYRLYKHQYDAL
ILNQDMIRADSGLRRMFIDPDTGRFWPLGHLIRPAAQLCNTYDRLANEGP
LSFYRGSIADDLLADLKDAGSAITKEDLNQAHAKLSSAIVMPLDEYDLHL
TPPPGSGHVLGFIMNILKEFRAEFSRAGTMSPRQIHLMVEAMKFGFVKRW
QLDESASEELLSNLTSHELAKSVARQINHTHTFNRPEFYGASPGIQIRDE
HGTAHTSVLHGNDAVSVTSSINFYFGSGRTGRRTGVIFNNAMSDFSIEQL
KNYFDLPFVPGTNGVAPAARPMSSMCPVIVTERATGNVRLVVGAAGGTKI
ISALSPLLVRILWQEASIKAAIDASRIHHQMLPNVLLYEYGLRQSYVDSL
AERGHRCERYENRGSVICGIAQANDTIWVNSDFRKPGGVSGF*

RE13973.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-PB 592 CG1492-PB 1..592 1..592 3072 100 Plus
CG1492-PA 592 CG1492-PA 1..592 1..592 3072 100 Plus
CG4829-PD 687 CG4829-PD 146..687 51..592 967 40.2 Plus
CG4829-PE 732 CG4829-PE 191..732 51..592 967 40.2 Plus
CG4829-PC 777 CG4829-PC 236..777 51..592 967 40.2 Plus