BDGP Sequence Production Resources |
Search the DGRC for RE13973
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 139 |
Well: | 73 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1492-RA |
Protein status: | RE13973.pep: gold |
Preliminary Size: | 1839 |
Sequenced Size: | 2299 |
Gene | Date | Evidence |
---|---|---|
CG1492 | 2001-12-17 | Blastp of sequenced clone |
CG1492 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1492 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1492 | 2008-04-29 | Release 5.5 accounting |
CG1492 | 2008-08-15 | Release 5.9 accounting |
CG1492 | 2008-12-18 | 5.12 accounting |
2299 bp (2299 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071056
> RE13973.complete AGTATGACCACTAGAAAACAGCAGAGAACAGCTGTTTTTTGAAATGAAAA GGATATGGATATTTCCATTTGAACTGCAATGGTGCGGCAATGGGGTTGAG AACAATGTAAATCTAGGTGCTAGCGATGTACATTAGGATAGGATTGAATA GTTTGATATCCGTGGTGATTGTCATCCTGGTGGCAGTCTATATCTACCGG TATCCGGACGGAAATGCTGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAA TCCGGAGGATCCACTGCCGCCCTCCAATTCGCCGCTCCATCGATTCTCCC GGGCGGCCATTTGCTCCGACAGCGATGTGTGCAGCCAATTGGCCAAAAAA GTCCTGGAGAATGGAGGAAGTGCTGTGGATGGCGCCTTGGCTGCTCTCAT TTGCAACGGACTCATCGGGATGCAGAGCATGGGCATCGGTGGCGGCATGG TGATGAATGTTTATGTGGCCAAGGAGAACAAATCCTACAGCATTCTGGCC AGGGAAATGGCGCCGCTGGCATTGCGTGCGGATAACTTCTCGTCATTTCG CGATGAGCAGGATTTCAAGAGATCCGGATGGTCCATTGCCGTGCCAGCTG AATTGGCCGGTTATGCGGTGGCCCACCAGAGATTCGGGCGGCTAAAGTGG AAGGATTTGGTGCTGCCAACTTTGGAATTGTGTCGTCGTGGCTATCGATT GTATAAGCACCAGTATGATGCGCTCATACTCAATCAGGACATGATCAGGG CCGATTCCGGCCTACGCCGGATGTTCATCGATCCCGACACCGGGCGCTTC TGGCCATTGGGTCATCTCATTCGCCCTGCGGCTCAATTGTGCAACACCTA CGATCGGTTGGCCAACGAGGGACCACTCAGTTTCTACCGCGGATCTATCG CCGATGATCTGCTGGCCGACTTGAAGGACGCGGGCAGTGCAATAACTAAG GAAGACCTCAACCAAGCGCACGCCAAATTGAGTAGCGCCATTGTGATGCC ACTGGATGAGTATGATCTCCATTTGACTCCTCCACCTGGAAGTGGTCACG TTCTCGGCTTCATAATGAACATACTAAAGGAGTTCCGGGCGGAATTCTCA AGAGCCGGAACTATGAGCCCACGTCAAATCCATTTGATGGTCGAGGCAAT GAAGTTTGGATTCGTCAAGCGATGGCAACTGGATGAATCCGCGAGCGAAG AGCTTTTGTCGAATTTGACCAGTCATGAATTGGCAAAATCCGTGGCCAGG CAAATTAACCACACACACACCTTTAACCGACCAGAGTTCTATGGAGCTTC ACCTGGAATTCAAATACGTGATGAGCACGGCACAGCGCACACTTCAGTGC TCCATGGAAACGATGCAGTTTCAGTGACAAGCTCCATCAATTTCTATTTT GGCAGTGGACGAACTGGCAGGCGCACAGGTGTCATCTTTAACAATGCCAT GTCGGATTTCTCCATCGAACAGCTCAAGAACTACTTCGATCTGCCCTTCG TGCCTGGCACGAATGGTGTAGCTCCTGCCGCCCGTCCCATGTCCTCCATG TGTCCAGTGATTGTCACGGAACGCGCCACTGGCAACGTTCGCTTGGTTGT GGGTGCCGCTGGCGGTACCAAAATAATCTCTGCCCTCTCTCCCCTCCTCG TGCGCATCCTGTGGCAGGAGGCAAGCATCAAGGCCGCCATCGATGCCAGC CGCATCCATCATCAAATGCTGCCCAATGTTCTGCTCTACGAGTATGGACT ACGGCAGAGCTATGTGGATAGCTTGGCGGAGAGGGGACATCGATGCGAGC GTTATGAGAACCGCGGTTCCGTCATCTGTGGAATCGCTCAAGCTAACGAC ACCATCTGGGTGAACTCGGATTTTCGGAAGCCAGGTGGAGTTAGTGGATT TTAAAAAAGTCGAATTCTTTTCACAAACTATACCAAACATATAGTATTTA CACAAAGTATTAATTATGTTTTCCAGCAGAAACTTATTCAAACACGTTAA TTGCTCAAATATGAATGAATTAACAAATTATTTTTCAATAAGTTAGTATT TAGTTTTTTTTTAGATGCTATCGCACGAAAGCAAACAGTATTTGTTTTTA AACGTTGTGTTACTTTAATGGTACTTAGATATAAAAAATAATTTATTTGT AATTTGTATCAGTTGCTAAAAATAATTTAAGTAGTATGTTGAATTTAAGT TACAATATATCCCTACACAGACGTGTAAAAGTGTTCTCGCTTGCGGTGGC AACAAATAAATAACGTTATGTATAAGAATGTTGCAACAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1492-RA | 2367 | CG1492-RA | 79..2367 | 1..2289 | 11445 | 100 | Plus |
CG1806-RA | 1696 | CG1806-RA | 1470..1696 | 2289..2063 | 1135 | 100 | Minus |
CG1806.a | 1583 | CG1806.a | 1385..1583 | 2289..2091 | 995 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 11902029..11903015 | 1202..216 | 4935 | 100 | Minus |
chrX | 22417052 | chrX | 11900794..11901682 | 2287..1397 | 4330 | 99.3 | Minus |
chrX | 22417052 | chrX | 11903071..11903290 | 220..1 | 1085 | 99.5 | Minus |
chrX | 22417052 | chrX | 11901754..11901949 | 1396..1201 | 965 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 12010948..12011934 | 1202..216 | 4935 | 100 | Minus |
X | 23542271 | X | 12009709..12010601 | 2289..1397 | 4465 | 100 | Minus |
X | 23542271 | X | 12011990..12012209 | 220..1 | 1085 | 99.5 | Minus |
X | 23542271 | X | 12010673..12010868 | 1396..1201 | 980 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 12019046..12020032 | 1202..216 | 4935 | 100 | Minus |
X | 23527363 | X | 12017807..12018699 | 2289..1397 | 4465 | 100 | Minus |
X | 23527363 | X | 12020088..12020307 | 220..1 | 1085 | 99.5 | Minus |
X | 23527363 | X | 12018771..12018966 | 1396..1201 | 980 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 4112..4169 | 2055..1997 | 121 | 71.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 11900794..11901682 | 1397..2287 | 99 | <- | Minus |
chrX | 11901754..11901947 | 1203..1396 | 99 | <- | Minus |
chrX | 11902029..11903014 | 217..1202 | 100 | <- | Minus |
chrX | 11903075..11903290 | 1..216 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1492-RA | 1..1779 | 126..1904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1492-RA | 1..1779 | 126..1904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1492-RA | 1..1779 | 126..1904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1492-RA | 1..1779 | 126..1904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1492-RA | 1..1779 | 126..1904 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1492-RA | 1..2287 | 1..2287 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1492-RA | 1..2287 | 1..2287 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1492-RA | 3..2000 | 1..1998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1492-RA | 1..2287 | 1..2287 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1492-RB | 3..2289 | 1..2287 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12009711..12010601 | 1397..2287 | 100 | <- | Minus |
X | 12010673..12010866 | 1203..1396 | 100 | <- | Minus |
X | 12010948..12011933 | 217..1202 | 100 | <- | Minus |
X | 12011994..12012209 | 1..216 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12009711..12010601 | 1397..2287 | 100 | <- | Minus |
X | 12010673..12010866 | 1203..1396 | 100 | <- | Minus |
X | 12010948..12011933 | 217..1202 | 100 | <- | Minus |
X | 12011994..12012209 | 1..216 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12009711..12010601 | 1397..2287 | 100 | <- | Minus |
X | 12010673..12010866 | 1203..1396 | 100 | <- | Minus |
X | 12010948..12011933 | 217..1202 | 100 | <- | Minus |
X | 12011994..12012209 | 1..216 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 11904706..11904899 | 1203..1396 | 100 | <- | Minus |
arm_X | 11906027..11906242 | 1..216 | 100 | Minus | |
arm_X | 11904981..11905966 | 217..1202 | 100 | <- | Minus |
arm_X | 11903744..11904634 | 1397..2287 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 12017809..12018699 | 1397..2287 | 100 | <- | Minus |
X | 12018771..12018964 | 1203..1396 | 100 | <- | Minus |
X | 12019046..12020031 | 217..1202 | 100 | <- | Minus |
X | 12020092..12020307 | 1..216 | 100 | Minus |
Translation from 125 to 1903
> RE13973.pep MYIRIGLNSLISVVIVILVAVYIYRYPDGNAGKKKASRRPPNPEDPLPPS NSPLHRFSRAAICSDSDVCSQLAKKVLENGGSAVDGALAALICNGLIGMQ SMGIGGGMVMNVYVAKENKSYSILAREMAPLALRADNFSSFRDEQDFKRS GWSIAVPAELAGYAVAHQRFGRLKWKDLVLPTLELCRRGYRLYKHQYDAL ILNQDMIRADSGLRRMFIDPDTGRFWPLGHLIRPAAQLCNTYDRLANEGP LSFYRGSIADDLLADLKDAGSAITKEDLNQAHAKLSSAIVMPLDEYDLHL TPPPGSGHVLGFIMNILKEFRAEFSRAGTMSPRQIHLMVEAMKFGFVKRW QLDESASEELLSNLTSHELAKSVARQINHTHTFNRPEFYGASPGIQIRDE HGTAHTSVLHGNDAVSVTSSINFYFGSGRTGRRTGVIFNNAMSDFSIEQL KNYFDLPFVPGTNGVAPAARPMSSMCPVIVTERATGNVRLVVGAAGGTKI ISALSPLLVRILWQEASIKAAIDASRIHHQMLPNVLLYEYGLRQSYVDSL AERGHRCERYENRGSVICGIAQANDTIWVNSDFRKPGGVSGF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19288-PA | 588 | GF19288-PA | 1..588 | 1..592 | 2128 | 67.9 | Plus |
Dana\GF21750-PA | 689 | GF21750-PA | 149..689 | 52..592 | 1026 | 40.6 | Plus |
Dana\GF22409-PA | 579 | GF22409-PA | 37..533 | 56..555 | 695 | 33.7 | Plus |
Dana\GF22184-PA | 670 | GF22184-PA | 142..629 | 60..556 | 681 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19568-PA | 592 | GG19568-PA | 1..592 | 1..592 | 2881 | 92.4 | Plus |
Dere\GG19084-PA | 727 | GG19084-PA | 186..727 | 51..592 | 1022 | 41.3 | Plus |
Dere\GG18112-PA | 603 | GG18112-PA | 62..561 | 57..561 | 701 | 34 | Plus |
Dere\GG19988-PA | 585 | GG19988-PA | 54..547 | 60..562 | 665 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24228-PA | 586 | GH24228-PA | 25..586 | 31..592 | 1950 | 65.1 | Plus |
Dgri\GH11925-PA | 825 | GH11925-PA | 282..825 | 51..592 | 1005 | 40.6 | Plus |
Dgri\GH12335-PA | 579 | GH12335-PA | 37..534 | 56..556 | 728 | 33.9 | Plus |
Dgri\GH12038-PA | 570 | GH12038-PA | 39..529 | 60..558 | 714 | 32.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1492-PB | 592 | CG1492-PB | 1..592 | 1..592 | 3072 | 100 | Plus |
CG1492-PA | 592 | CG1492-PA | 1..592 | 1..592 | 3072 | 100 | Plus |
CG4829-PD | 687 | CG4829-PD | 146..687 | 51..592 | 967 | 40.2 | Plus |
CG4829-PE | 732 | CG4829-PE | 191..732 | 51..592 | 967 | 40.2 | Plus |
CG4829-PC | 777 | CG4829-PC | 236..777 | 51..592 | 967 | 40.2 | Plus |
CG4829-PA | 777 | CG4829-PA | 236..777 | 51..592 | 967 | 40.2 | Plus |
CG4829-PB | 822 | CG4829-PB | 281..822 | 51..592 | 967 | 40.2 | Plus |
CG4829-PF | 491 | CG4829-PF | 1..491 | 102..592 | 844 | 39.5 | Plus |
Ggt-1-PB | 579 | CG6461-PB | 42..537 | 61..561 | 704 | 35.2 | Plus |
Ggt-1-PA | 579 | CG6461-PA | 42..537 | 61..561 | 704 | 35.2 | Plus |
CG17636-PA | 571 | CG17636-PA | 41..526 | 61..555 | 646 | 32.6 | Plus |
CG17636-PC | 585 | CG17636-PC | 55..540 | 61..555 | 646 | 32.6 | Plus |
CG17636-PB | 501 | CG17636-PB | 1..456 | 91..555 | 587 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15734-PA | 563 | GI15734-PA | 2..563 | 31..592 | 2039 | 66.9 | Plus |
Dmoj\GI15346-PA | 822 | GI15346-PA | 280..822 | 51..592 | 1022 | 40.6 | Plus |
Dmoj\GI15585-PA | 561 | GI15585-PA | 19..524 | 56..564 | 718 | 32.8 | Plus |
Dmoj\GI16193-PA | 572 | GI16193-PA | 40..529 | 60..557 | 695 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15840-PA | 591 | GL15840-PA | 1..591 | 1..592 | 2295 | 70.3 | Plus |
Dper\GL16517-PA | 869 | GL16517-PA | 328..869 | 51..592 | 1028 | 42 | Plus |
Dper\GL27026-PA | 579 | GL27026-PA | 31..555 | 47..575 | 673 | 33.6 | Plus |
Dper\GL13355-PA | 566 | GL13355-PA | 36..526 | 60..560 | 639 | 31.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13353-PA | 591 | GA13353-PA | 8..591 | 8..592 | 2270 | 70.3 | Plus |
Dpse\GA23076-PA | 791 | GA23076-PA | 250..791 | 51..592 | 1044 | 42.7 | Plus |
Dpse\GA19613-PA | 579 | GA19613-PA | 31..555 | 47..575 | 673 | 33.6 | Plus |
Dpse\GA22840-PB | 584 | GA22840-PB | 54..544 | 60..560 | 647 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13229-PA | 592 | GM13229-PA | 1..592 | 1..592 | 2910 | 93.6 | Plus |
Dsec\GM13472-PA | 687 | GM13472-PA | 146..687 | 51..592 | 1005 | 39.6 | Plus |
Dsec\GM22803-PA | 579 | GM22803-PA | 38..537 | 57..561 | 725 | 34.9 | Plus |
Dsec\GM11114-PA | 542 | GM11114-PA | 49..526 | 60..546 | 658 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15947-PA | 592 | GD15947-PA | 1..592 | 1..592 | 2989 | 94.1 | Plus |
Dsim\GD17313-PA | 1057 | GD17313-PA | 198..694 | 76..572 | 926 | 40 | Plus |
Dsim\GD16490-PA | 580 | GD16490-PA | 49..542 | 60..562 | 668 | 32.3 | Plus |
Dsim\GD24475-PA | 286 | GD24475-PA | 15..285 | 155..422 | 292 | 31 | Plus |
Dsim\GD15628-PA | 158 | GD15628-PA | 1..116 | 442..561 | 236 | 42.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15262-PA | 565 | GJ15262-PA | 5..565 | 32..592 | 1955 | 64.3 | Plus |
Dvir\GJ19318-PA | 829 | GJ19318-PA | 263..829 | 31..592 | 1065 | 40.3 | Plus |
Dvir\GJ15189-PA | 561 | GJ15189-PA | 19..515 | 56..555 | 706 | 33.3 | Plus |
Dvir\GJ16681-PA | 545 | GJ16681-PA | 41..501 | 61..556 | 629 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24982-PA | 570 | GK24982-PA | 10..570 | 34..592 | 1936 | 64.9 | Plus |
Dwil\GK25371-PA | 820 | GK25371-PA | 281..820 | 52..592 | 1037 | 42.3 | Plus |
Dwil\GK16403-PA | 580 | GK16403-PA | 37..534 | 55..555 | 679 | 33.3 | Plus |
Dwil\GK15427-PA | 570 | GK15427-PA | 40..529 | 60..558 | 634 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16728-PA | 593 | GE16728-PA | 1..593 | 1..592 | 2828 | 90.9 | Plus |
Dyak\GE17630-PA | 732 | GE17630-PA | 191..732 | 51..592 | 989 | 40.2 | Plus |
Dyak\GE15517-PA | 583 | GE15517-PA | 46..541 | 61..561 | 707 | 35.1 | Plus |
Dyak\GE11521-PA | 516 | GE11521-PA | 1..471 | 76..555 | 650 | 33.2 | Plus |
Translation from 125 to 1903
> RE13973.hyp MYIRIGLNSLISVVIVILVAVYIYRYPDGNAGKKKASRRPPNPEDPLPPS NSPLHRFSRAAICSDSDVCSQLAKKVLENGGSAVDGALAALICNGLIGMQ SMGIGGGMVMNVYVAKENKSYSILAREMAPLALRADNFSSFRDEQDFKRS GWSIAVPAELAGYAVAHQRFGRLKWKDLVLPTLELCRRGYRLYKHQYDAL ILNQDMIRADSGLRRMFIDPDTGRFWPLGHLIRPAAQLCNTYDRLANEGP LSFYRGSIADDLLADLKDAGSAITKEDLNQAHAKLSSAIVMPLDEYDLHL TPPPGSGHVLGFIMNILKEFRAEFSRAGTMSPRQIHLMVEAMKFGFVKRW QLDESASEELLSNLTSHELAKSVARQINHTHTFNRPEFYGASPGIQIRDE HGTAHTSVLHGNDAVSVTSSINFYFGSGRTGRRTGVIFNNAMSDFSIEQL KNYFDLPFVPGTNGVAPAARPMSSMCPVIVTERATGNVRLVVGAAGGTKI ISALSPLLVRILWQEASIKAAIDASRIHHQMLPNVLLYEYGLRQSYVDSL AERGHRCERYENRGSVICGIAQANDTIWVNSDFRKPGGVSGF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1492-PB | 592 | CG1492-PB | 1..592 | 1..592 | 3072 | 100 | Plus |
CG1492-PA | 592 | CG1492-PA | 1..592 | 1..592 | 3072 | 100 | Plus |
CG4829-PD | 687 | CG4829-PD | 146..687 | 51..592 | 967 | 40.2 | Plus |
CG4829-PE | 732 | CG4829-PE | 191..732 | 51..592 | 967 | 40.2 | Plus |
CG4829-PC | 777 | CG4829-PC | 236..777 | 51..592 | 967 | 40.2 | Plus |