Clone RE14003 Report

Search the DGRC for RE14003

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:140
Well:3
Vector:pFlc-1
Associated Gene/TranscriptAtg9-RA
Protein status:RE14003.pep: gold
Preliminary Size:2834
Sequenced Size:2846

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3615 2003-01-01 Sim4 clustering to Release 3
CG3615 2003-04-01 Blastp of sequenced clone
Atg9 2008-04-29 Release 5.5 accounting
Atg9 2008-08-15 Release 5.9 accounting
Atg9 2008-12-18 5.12 accounting

Clone Sequence Records

RE14003.complete Sequence

2846 bp (2846 high quality bases) assembled on 2003-04-01

GenBank Submission: BT006028

> RE14003.complete
CTCTTAGGAGAGTCAGCTGTTTGCTGAGAAGGTTCAGCAGAATCAAACAA
CAAAGAATTTTCCAACTTATACTATACAGCGATATAAATAGTCAGAACGG
TTGACCTTGACGTTGGGCGATGTCTAGCCCACATATCAACTACCGCTCCC
TGGCCGAGGAGGCGGCCAGTCCGTTCCTGGAGCACCATCCCTCCACAGGC
CAAGGCCCATCCAAAACACAAGACGCAAAAGCGAACGCAGCTGCTGCGCA
TTTAGACCCCCTCGGTGAACACGGGCTGGAGCAGCCGCTGGATGAGCACG
ACACCGAGCATGAGGGCGAGGACACGCCTCGAAACAGTGGCGTCATGATC
CACATGGTTCCGGAGACGGGGCGTGCGCGGTGGAACCACATCGAGGACCT
TGACTCGTTCTTCTCGCGAATGTATCAGTACCAGCAGAAGCACGGATTCA
CAGTGATTGTAGTGGACGAAATGCTACAGGTTCTGGAGTTTGGTTTCGTC
GTCTGGCTACTTGCCTTTGTGATGCACTGCGTCCGATTTGACGTGCTCTT
TGGGGACACCCCTCCAGGGGGACTTAACCCCAACAAGACAACTTTATCCG
ATGTGATGTACCCCACAGGCGAGTGCTTAGCCAACTTCACTTGGGTCACG
TACCTGGTTGTGTTCATAGCCGCTATCTATTTGGGCATAAGGCTTCTGAA
AATGGTGTACCATATTACCCAGTACGCCGATATAAAGAGATTCTACAACT
CTGCGCTTCATATCGAGGATTCGGATCTGGACAACTTTACGTGGCACGAG
GTGCAACAGCGGATTCGTCGCGTCCAGGCCGAACAGCATATGTGCATCGA
CAAGGAGTCGCTTACGGAATTGGACATCTATCACCGAGTTCTGCGCTTCA
AGAACTACCTAGTGGCACTGATGAACAAGCAACTGCTGCCTGTAAGGTTC
CACATACCGCTGTATGGCGAAGTGGTCTCGCTGAGTAGAGGTATGTTGTT
CAACATTGACTTCATCTTGTTTCGCGGCCCTGGATCTCCCTTCCAGAACA
ATTGGCAGCTGCGTGATGAGTTTGCGGTAAGAAGCAATCAAACGGAGCTG
GCGCAGCGACTCTCCAAACTGATATTGGGGGTGGCGTTGTTAAATTTGGT
CCTAGCGCCTGTGATCTTCGTATGGCAACTTATCTACTTCAGTTTCTCCT
ATGCGAACATTCTTCGTAAGGAGCCTGGTGCCCTTGGCCTGCGTACATGG
TCCAATTACGGCCGCCTCTACCTGCGCCACTTTAATGAACTGGACCACGA
ACTAGATGCCAGGCTGAATCGGGCATATGACTACGCGGACCGCTATCTCA
ACTCCTTTTCCTCGCCACTGGCCGCTGTGATAGCCAAAAACCTACTCTTT
ATCAGTGGAGGACTACTACTTCTAATCCTTGCATTGGGCATTTACGAGGA
ACACGTCTTCCAGGTGGAGCATTTGCTTGCCATCCTTGCAGGGCTCGGCG
CCATAGGTGTGGTCTGCAGAACTCTAATACCGGATGAGAATCTCGTTTGG
TGCCCAGAGCAGCTAATGACCGCCATTCTGGCGCACGTTCACTACCTGCC
CTCCGAGTGGCGGCAGCAGGCGCACACGACAAAGGTTCGCCAGGAGTTTA
GCAACTTCTTTCAGTTTAAGGCTGGCTACCTACTCAGCGAAATCTTCAGT
CCCTTCGTCACACCCTTCGTGCTGATCTTTGTGTTCAGGCCAAAGGCCAT
AGAGCTGGTGCGTTTCTTCAGGACGTTCACCGTATCCGTGCGAGGAGTGG
GCAACGTATGCTCCTTTGCCCAGATGGATGTTCGCAAGCATGGCAATCCC
GACTGGCAGTTAACCAGCGAACTGGAGGAGATGACCCGGGCTACAGCTCA
ACAGCCGCAGCAGGAGCCACAGCAGCAAAGTTTGGCCGGCGGCAAAACGG
AGATGTCGCTTCTTCGCTTCACCCTGAACAATCCCGAGTGGCAGATGCCC
AAGGAGGCCAAGCAGTTCCTGCGCGGCGTTAGAGAGCACGCCGTTGGTGA
ACTAGTCCAGGCCAAGACGTCGATGGTGCAGGAGAACCCGCTGACCAACA
GCCTCATCTCATTTGGCACCATGGGAGCGGATTATTGTTCCATTGCGAAC
TCTGTGCTGACCGCACAGGTGACGCCCCAGCAACTGGAGATTTCGCAGTC
GTTGCGTCCGGGTCTAGGACCGGTATCTGGAGGATTCCCCGTCGCAGCCA
GCGACTTCCGCCAGATGTTGCAGCAGAATCTGTCCGCCAGTGTCGGCCCG
CTGGACAGCATGCGCCGATTGCGCCTCAGCCGGGCTGAAGGCCGCTTGGA
GGGTCCGACGGATACACTGCTCTACGGACTCTGTGGTGTGGACCCGCGCG
TGGGCAGCACTCCCTTGAATGTGGGCGTGGCCGACATGTGCCTCAGTGCC
CTCTATTTGCACGAGCTGAACCAGCAGAAGCGCCAAGCGCGCCAGTCTCG
CATCGACGAGGCCGAGGACGAGCGTCCTGGTACGAGCCATTGGCCACCGC
GACCACCAGCTGCTCCGTCGGCTGATACTGGCTTCGGCTCCCGCCATACC
GTGATTACCTCAAAGGCTGCCGAGAGCACGCCGCTTTTGGGTAGCATCCG
CTCATAGCAGCGGCCAGAGTGGATCTAACCACCTGTAGAGCTAAGGACCA
CCCATTCTGCTATTAGTGATTAACCTAAATTTTAAAGTGTAAACGAACGA
ACGACGTCGTCTAGTGCGTAGCTAAACTAATCTGAAACTAAGCTAAACTA
AACGAGAAGCAATAAACATAAATGCATTACCAAAAAAAAAAAAAAA

RE14003.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
Atg9-RA 2834 Atg9-RA 1..2834 1..2834 14155 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12181746..12184574 1..2829 13830 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16294402..16297235 1..2834 14155 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16295601..16298434 1..2834 14155 99.9 Plus
Blast to na_te.dros performed on 2019-03-15 16:18:07 has no hits.

RE14003.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:19:16 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12181746..12184576 1..2831 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:55 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
Atg9-RA 1..2538 120..2657 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:45:31 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
Atg9-RA 1..2538 120..2657 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:59:44 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
Atg9-RB 1..2559 120..2678 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:36:58 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
Atg9-RA 1..2538 120..2657 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:11 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
Atg9-RB 1..2559 120..2678 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:56:34 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
Atg9-RA 1..2831 1..2831 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:45:31 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
Atg9-RA 5..2835 1..2831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:44 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
Atg9-RA 3..2833 1..2831 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:36:58 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
Atg9-RA 1..2831 1..2831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:11 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
Atg9-RA 3..2833 1..2831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:16 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16294402..16297232 1..2831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:16 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16294402..16297232 1..2831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:16 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16294402..16297232 1..2831 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:44 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12181907..12184737 1..2831 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:07:02 Download gff for RE14003.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16295601..16298431 1..2831 99   Plus

RE14003.hyp Sequence

Translation from 119 to 2656

> RE14003.hyp
MSSPHINYRSLAEEAASPFLEHHPSTGQGPSKTQDAKANAAAAHLDPLGE
HGLEQPLDEHDTEHEGEDTPRNSGVMIHMVPETGRARWNHIEDLDSFFSR
MYQYQQKHGFTVIVVDEMLQVLEFGFVVWLLAFVMHCVRFDVLFGDTPPG
GLNPNKTTLSDVMYPTGECLANFTWVTYLVVFIAAIYLGIRLLKMVYHIT
QYADIKRFYNSALHIEDSDLDNFTWHEVQQRIRRVQAEQHMCIDKESLTE
LDIYHRVLRFKNYLVALMNKQLLPVRFHIPLYGEVVSLSRGMLFNIDFIL
FRGPGSPFQNNWQLRDEFAVRSNQTELAQRLSKLILGVALLNLVLAPVIF
VWQLIYFSFSYANILRKEPGALGLRTWSNYGRLYLRHFNELDHELDARLN
RAYDYADRYLNSFSSPLAAVIAKNLLFISGGLLLLILALGIYEEHVFQVE
HLLAILAGLGAIGVVCRTLIPDENLVWCPEQLMTAILAHVHYLPSEWRQQ
AHTTKVRQEFSNFFQFKAGYLLSEIFSPFVTPFVLIFVFRPKAIELVRFF
RTFTVSVRGVGNVCSFAQMDVRKHGNPDWQLTSELEEMTRATAQQPQQEP
QQQSLAGGKTEMSLLRFTLNNPEWQMPKEAKQFLRGVREHAVGELVQAKT
SMVQENPLTNSLISFGTMGADYCSIANSVLTAQVTPQQLEISQSLRPGLG
PVSGGFPVAASDFRQMLQQNLSASVGPLDSMRRLRLSRAEGRLEGPTDTL
LYGLCGVDPRVGSTPLNVGVADMCLSALYLHELNQQKRQARQSRIDEAED
ERPGTSHWPPRPPAAPSADTGFGSRHTVITSKAAESTPLLGSIRS*

RE14003.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Atg9-PB 852 CG3615-PB 1..845 1..845 4412 100 Plus
Atg9-PA 845 CG3615-PA 1..845 1..845 4412 100 Plus

RE14003.pep Sequence

Translation from 119 to 2656

> RE14003.pep
MSSPHINYRSLAEEAASPFLEHHPSTGQGPSKTQDAKANAAAAHLDPLGE
HGLEQPLDEHDTEHEGEDTPRNSGVMIHMVPETGRARWNHIEDLDSFFSR
MYQYQQKHGFTVIVVDEMLQVLEFGFVVWLLAFVMHCVRFDVLFGDTPPG
GLNPNKTTLSDVMYPTGECLANFTWVTYLVVFIAAIYLGIRLLKMVYHIT
QYADIKRFYNSALHIEDSDLDNFTWHEVQQRIRRVQAEQHMCIDKESLTE
LDIYHRVLRFKNYLVALMNKQLLPVRFHIPLYGEVVSLSRGMLFNIDFIL
FRGPGSPFQNNWQLRDEFAVRSNQTELAQRLSKLILGVALLNLVLAPVIF
VWQLIYFSFSYANILRKEPGALGLRTWSNYGRLYLRHFNELDHELDARLN
RAYDYADRYLNSFSSPLAAVIAKNLLFISGGLLLLILALGIYEEHVFQVE
HLLAILAGLGAIGVVCRTLIPDENLVWCPEQLMTAILAHVHYLPSEWRQQ
AHTTKVRQEFSNFFQFKAGYLLSEIFSPFVTPFVLIFVFRPKAIELVRFF
RTFTVSVRGVGNVCSFAQMDVRKHGNPDWQLTSELEEMTRATAQQPQQEP
QQQSLAGGKTEMSLLRFTLNNPEWQMPKEAKQFLRGVREHAVGELVQAKT
SMVQENPLTNSLISFGTMGADYCSIANSVLTAQVTPQQLEISQSLRPGLG
PVSGGFPVAASDFRQMLQQNLSASVGPLDSMRRLRLSRAEGRLEGPTDTL
LYGLCGVDPRVGSTPLNVGVADMCLSALYLHELNQQKRQARQSRIDEAED
ERPGTSHWPPRPPAAPSADTGFGSRHTVITSKAAESTPLLGSIRS*

RE14003.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Atg9-PA 844 GF13590-PA 1..844 1..845 3753 86.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\Atg9-PA 845 GG20593-PA 1..845 1..845 4404 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19901-PA 890 GH19901-PA 1..890 1..845 3260 71.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Atg9-PB 852 CG3615-PB 1..845 1..845 4412 100 Plus
Atg9-PA 845 CG3615-PA 1..845 1..845 4412 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19856-PA 859 GI19856-PA 1..859 1..845 3197 73.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10727-PA 734 GL10727-PA 177..734 271..845 2267 75.1 Plus
Dper\GL10727-PA 734 GL10727-PA 1..251 1..277 787 59.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Atg9-PA 819 GA17560-PA 1..819 1..845 3537 78.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Atg9-PA 845 GM21685-PA 1..845 1..845 4480 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Atg9-PA 845 GD11183-PA 1..845 1..845 4487 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18883-PA 871 GJ18883-PA 1..871 1..845 3329 72.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20903-PA 884 GK20903-PA 1..884 1..845 3127 70.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Atg9-PA 846 GE11779-PA 1..846 1..845 4367 96.3 Plus