BDGP Sequence Production Resources |
Search the DGRC for RE14003
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 140 |
Well: | 3 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Atg9-RA |
Protein status: | RE14003.pep: gold |
Preliminary Size: | 2834 |
Sequenced Size: | 2846 |
Gene | Date | Evidence |
---|---|---|
CG3615 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3615 | 2003-04-01 | Blastp of sequenced clone |
Atg9 | 2008-04-29 | Release 5.5 accounting |
Atg9 | 2008-08-15 | Release 5.9 accounting |
Atg9 | 2008-12-18 | 5.12 accounting |
2846 bp (2846 high quality bases) assembled on 2003-04-01
GenBank Submission: BT006028
> RE14003.complete CTCTTAGGAGAGTCAGCTGTTTGCTGAGAAGGTTCAGCAGAATCAAACAA CAAAGAATTTTCCAACTTATACTATACAGCGATATAAATAGTCAGAACGG TTGACCTTGACGTTGGGCGATGTCTAGCCCACATATCAACTACCGCTCCC TGGCCGAGGAGGCGGCCAGTCCGTTCCTGGAGCACCATCCCTCCACAGGC CAAGGCCCATCCAAAACACAAGACGCAAAAGCGAACGCAGCTGCTGCGCA TTTAGACCCCCTCGGTGAACACGGGCTGGAGCAGCCGCTGGATGAGCACG ACACCGAGCATGAGGGCGAGGACACGCCTCGAAACAGTGGCGTCATGATC CACATGGTTCCGGAGACGGGGCGTGCGCGGTGGAACCACATCGAGGACCT TGACTCGTTCTTCTCGCGAATGTATCAGTACCAGCAGAAGCACGGATTCA CAGTGATTGTAGTGGACGAAATGCTACAGGTTCTGGAGTTTGGTTTCGTC GTCTGGCTACTTGCCTTTGTGATGCACTGCGTCCGATTTGACGTGCTCTT TGGGGACACCCCTCCAGGGGGACTTAACCCCAACAAGACAACTTTATCCG ATGTGATGTACCCCACAGGCGAGTGCTTAGCCAACTTCACTTGGGTCACG TACCTGGTTGTGTTCATAGCCGCTATCTATTTGGGCATAAGGCTTCTGAA AATGGTGTACCATATTACCCAGTACGCCGATATAAAGAGATTCTACAACT CTGCGCTTCATATCGAGGATTCGGATCTGGACAACTTTACGTGGCACGAG GTGCAACAGCGGATTCGTCGCGTCCAGGCCGAACAGCATATGTGCATCGA CAAGGAGTCGCTTACGGAATTGGACATCTATCACCGAGTTCTGCGCTTCA AGAACTACCTAGTGGCACTGATGAACAAGCAACTGCTGCCTGTAAGGTTC CACATACCGCTGTATGGCGAAGTGGTCTCGCTGAGTAGAGGTATGTTGTT CAACATTGACTTCATCTTGTTTCGCGGCCCTGGATCTCCCTTCCAGAACA ATTGGCAGCTGCGTGATGAGTTTGCGGTAAGAAGCAATCAAACGGAGCTG GCGCAGCGACTCTCCAAACTGATATTGGGGGTGGCGTTGTTAAATTTGGT CCTAGCGCCTGTGATCTTCGTATGGCAACTTATCTACTTCAGTTTCTCCT ATGCGAACATTCTTCGTAAGGAGCCTGGTGCCCTTGGCCTGCGTACATGG TCCAATTACGGCCGCCTCTACCTGCGCCACTTTAATGAACTGGACCACGA ACTAGATGCCAGGCTGAATCGGGCATATGACTACGCGGACCGCTATCTCA ACTCCTTTTCCTCGCCACTGGCCGCTGTGATAGCCAAAAACCTACTCTTT ATCAGTGGAGGACTACTACTTCTAATCCTTGCATTGGGCATTTACGAGGA ACACGTCTTCCAGGTGGAGCATTTGCTTGCCATCCTTGCAGGGCTCGGCG CCATAGGTGTGGTCTGCAGAACTCTAATACCGGATGAGAATCTCGTTTGG TGCCCAGAGCAGCTAATGACCGCCATTCTGGCGCACGTTCACTACCTGCC CTCCGAGTGGCGGCAGCAGGCGCACACGACAAAGGTTCGCCAGGAGTTTA GCAACTTCTTTCAGTTTAAGGCTGGCTACCTACTCAGCGAAATCTTCAGT CCCTTCGTCACACCCTTCGTGCTGATCTTTGTGTTCAGGCCAAAGGCCAT AGAGCTGGTGCGTTTCTTCAGGACGTTCACCGTATCCGTGCGAGGAGTGG GCAACGTATGCTCCTTTGCCCAGATGGATGTTCGCAAGCATGGCAATCCC GACTGGCAGTTAACCAGCGAACTGGAGGAGATGACCCGGGCTACAGCTCA ACAGCCGCAGCAGGAGCCACAGCAGCAAAGTTTGGCCGGCGGCAAAACGG AGATGTCGCTTCTTCGCTTCACCCTGAACAATCCCGAGTGGCAGATGCCC AAGGAGGCCAAGCAGTTCCTGCGCGGCGTTAGAGAGCACGCCGTTGGTGA ACTAGTCCAGGCCAAGACGTCGATGGTGCAGGAGAACCCGCTGACCAACA GCCTCATCTCATTTGGCACCATGGGAGCGGATTATTGTTCCATTGCGAAC TCTGTGCTGACCGCACAGGTGACGCCCCAGCAACTGGAGATTTCGCAGTC GTTGCGTCCGGGTCTAGGACCGGTATCTGGAGGATTCCCCGTCGCAGCCA GCGACTTCCGCCAGATGTTGCAGCAGAATCTGTCCGCCAGTGTCGGCCCG CTGGACAGCATGCGCCGATTGCGCCTCAGCCGGGCTGAAGGCCGCTTGGA GGGTCCGACGGATACACTGCTCTACGGACTCTGTGGTGTGGACCCGCGCG TGGGCAGCACTCCCTTGAATGTGGGCGTGGCCGACATGTGCCTCAGTGCC CTCTATTTGCACGAGCTGAACCAGCAGAAGCGCCAAGCGCGCCAGTCTCG CATCGACGAGGCCGAGGACGAGCGTCCTGGTACGAGCCATTGGCCACCGC GACCACCAGCTGCTCCGTCGGCTGATACTGGCTTCGGCTCCCGCCATACC GTGATTACCTCAAAGGCTGCCGAGAGCACGCCGCTTTTGGGTAGCATCCG CTCATAGCAGCGGCCAGAGTGGATCTAACCACCTGTAGAGCTAAGGACCA CCCATTCTGCTATTAGTGATTAACCTAAATTTTAAAGTGTAAACGAACGA ACGACGTCGTCTAGTGCGTAGCTAAACTAATCTGAAACTAAGCTAAACTA AACGAGAAGCAATAAACATAAATGCATTACCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg9-RA | 2834 | Atg9-RA | 1..2834 | 1..2834 | 14155 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 12181746..12184574 | 1..2829 | 13830 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 16294402..16297235 | 1..2834 | 14155 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 16295601..16298434 | 1..2834 | 14155 | 99.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 12181746..12184576 | 1..2831 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg9-RA | 1..2538 | 120..2657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg9-RA | 1..2538 | 120..2657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg9-RB | 1..2559 | 120..2678 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg9-RA | 1..2538 | 120..2657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg9-RB | 1..2559 | 120..2678 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg9-RA | 1..2831 | 1..2831 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg9-RA | 5..2835 | 1..2831 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg9-RA | 3..2833 | 1..2831 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg9-RA | 1..2831 | 1..2831 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg9-RA | 3..2833 | 1..2831 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16294402..16297232 | 1..2831 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16294402..16297232 | 1..2831 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16294402..16297232 | 1..2831 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 12181907..12184737 | 1..2831 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16295601..16298431 | 1..2831 | 99 | Plus |
Translation from 119 to 2656
> RE14003.hyp MSSPHINYRSLAEEAASPFLEHHPSTGQGPSKTQDAKANAAAAHLDPLGE HGLEQPLDEHDTEHEGEDTPRNSGVMIHMVPETGRARWNHIEDLDSFFSR MYQYQQKHGFTVIVVDEMLQVLEFGFVVWLLAFVMHCVRFDVLFGDTPPG GLNPNKTTLSDVMYPTGECLANFTWVTYLVVFIAAIYLGIRLLKMVYHIT QYADIKRFYNSALHIEDSDLDNFTWHEVQQRIRRVQAEQHMCIDKESLTE LDIYHRVLRFKNYLVALMNKQLLPVRFHIPLYGEVVSLSRGMLFNIDFIL FRGPGSPFQNNWQLRDEFAVRSNQTELAQRLSKLILGVALLNLVLAPVIF VWQLIYFSFSYANILRKEPGALGLRTWSNYGRLYLRHFNELDHELDARLN RAYDYADRYLNSFSSPLAAVIAKNLLFISGGLLLLILALGIYEEHVFQVE HLLAILAGLGAIGVVCRTLIPDENLVWCPEQLMTAILAHVHYLPSEWRQQ AHTTKVRQEFSNFFQFKAGYLLSEIFSPFVTPFVLIFVFRPKAIELVRFF RTFTVSVRGVGNVCSFAQMDVRKHGNPDWQLTSELEEMTRATAQQPQQEP QQQSLAGGKTEMSLLRFTLNNPEWQMPKEAKQFLRGVREHAVGELVQAKT SMVQENPLTNSLISFGTMGADYCSIANSVLTAQVTPQQLEISQSLRPGLG PVSGGFPVAASDFRQMLQQNLSASVGPLDSMRRLRLSRAEGRLEGPTDTL LYGLCGVDPRVGSTPLNVGVADMCLSALYLHELNQQKRQARQSRIDEAED ERPGTSHWPPRPPAAPSADTGFGSRHTVITSKAAESTPLLGSIRS*
Translation from 119 to 2656
> RE14003.pep MSSPHINYRSLAEEAASPFLEHHPSTGQGPSKTQDAKANAAAAHLDPLGE HGLEQPLDEHDTEHEGEDTPRNSGVMIHMVPETGRARWNHIEDLDSFFSR MYQYQQKHGFTVIVVDEMLQVLEFGFVVWLLAFVMHCVRFDVLFGDTPPG GLNPNKTTLSDVMYPTGECLANFTWVTYLVVFIAAIYLGIRLLKMVYHIT QYADIKRFYNSALHIEDSDLDNFTWHEVQQRIRRVQAEQHMCIDKESLTE LDIYHRVLRFKNYLVALMNKQLLPVRFHIPLYGEVVSLSRGMLFNIDFIL FRGPGSPFQNNWQLRDEFAVRSNQTELAQRLSKLILGVALLNLVLAPVIF VWQLIYFSFSYANILRKEPGALGLRTWSNYGRLYLRHFNELDHELDARLN RAYDYADRYLNSFSSPLAAVIAKNLLFISGGLLLLILALGIYEEHVFQVE HLLAILAGLGAIGVVCRTLIPDENLVWCPEQLMTAILAHVHYLPSEWRQQ AHTTKVRQEFSNFFQFKAGYLLSEIFSPFVTPFVLIFVFRPKAIELVRFF RTFTVSVRGVGNVCSFAQMDVRKHGNPDWQLTSELEEMTRATAQQPQQEP QQQSLAGGKTEMSLLRFTLNNPEWQMPKEAKQFLRGVREHAVGELVQAKT SMVQENPLTNSLISFGTMGADYCSIANSVLTAQVTPQQLEISQSLRPGLG PVSGGFPVAASDFRQMLQQNLSASVGPLDSMRRLRLSRAEGRLEGPTDTL LYGLCGVDPRVGSTPLNVGVADMCLSALYLHELNQQKRQARQSRIDEAED ERPGTSHWPPRPPAAPSADTGFGSRHTVITSKAAESTPLLGSIRS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\Atg9-PA | 844 | GF13590-PA | 1..844 | 1..845 | 3753 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\Atg9-PA | 845 | GG20593-PA | 1..845 | 1..845 | 4404 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19901-PA | 890 | GH19901-PA | 1..890 | 1..845 | 3260 | 71.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg9-PB | 852 | CG3615-PB | 1..845 | 1..845 | 4412 | 100 | Plus |
Atg9-PA | 845 | CG3615-PA | 1..845 | 1..845 | 4412 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19856-PA | 859 | GI19856-PA | 1..859 | 1..845 | 3197 | 73.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10727-PA | 734 | GL10727-PA | 177..734 | 271..845 | 2267 | 75.1 | Plus |
Dper\GL10727-PA | 734 | GL10727-PA | 1..251 | 1..277 | 787 | 59.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Atg9-PA | 819 | GA17560-PA | 1..819 | 1..845 | 3537 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\Atg9-PA | 845 | GM21685-PA | 1..845 | 1..845 | 4480 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Atg9-PA | 845 | GD11183-PA | 1..845 | 1..845 | 4487 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18883-PA | 871 | GJ18883-PA | 1..871 | 1..845 | 3329 | 72.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20903-PA | 884 | GK20903-PA | 1..884 | 1..845 | 3127 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Atg9-PA | 846 | GE11779-PA | 1..846 | 1..845 | 4367 | 96.3 | Plus |