BDGP Sequence Production Resources |
Search the DGRC for RE14081
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 140 |
Well: | 81 |
Vector: | pFlc-1 |
Associated Gene/Transcript | UGP-RC |
Protein status: | RE14081.pep: gold |
Preliminary Size: | 2694 |
Sequenced Size: | 2029 |
Gene | Date | Evidence |
---|---|---|
CG4347 | 2003-02-13 | Blastp of sequenced clone |
UGP | 2008-04-29 | Release 5.5 accounting |
UGP | 2008-08-15 | Release 5.9 accounting |
UGP | 2008-12-18 | 5.12 accounting |
2029 bp (2029 high quality bases) assembled on 2003-02-13
GenBank Submission: BT003777
> RE14081.complete AATTGTTCGTATCGTGGATTCGGAGAAGCGGATAATAATCTTGAGAGAAT CAATTTAATTTTACACTAAAAGTTGCGGGTGTAAAAAAGTTTCAGTGTGG TTTCTCATTCTCTTTGCTTTCAATTTGTGTGTGTGTGTGCAGCAAAACAA CTAAATTAGTGACGCTTAATTGCTAAATTACTCAAGTGTTAAATTTACTT TACTTCAAAATGCTGGATGTTCCACATGAAGCTAAGGTGCGCGGCCACCA GCGTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAACGGGATG CACTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGACCACTGAG AAGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCGCCGATCT GTTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGGAACAAGA TTCAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCTTAAGTCG CCCAAGAACGAGCAGAATGAGATCCGCAACATGTTGGATAAATTGGTGGT CATCAAGCTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCATGGTCCCA AGAGTGTGATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCTGACCGTG CAGCAAATCGAGCATCTCAACAAGACCTACGATGCCAATGTTCCGCTGGT ACTGATGAACTCCTTTAACACCGACGAGGATACCGAGAAGATCGTGCGCA AGTACAAAGGATTCCGTGTGCAGATCCACACCTTCAACCAGAGCTGCTTC CCGCGCATTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACTTTGATGT CGAAAAGGATATGGAAGCCTGGTATCCACCTGGACACGGTGACTTCTACG ATACCTTCCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGAGGGCCGC GAGTATTGTTTCTTGTCCAACATCGATAACCTGGGCGCCACCGTCGATCT GAACATCCTCAATAAGCTGGTGGGCGAGGAGCGGGCCACTACTCCAGTGG AGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGGTGGT ACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGCTCAAGT GCCACCAGAGCATGTGGATGACTTTAAGTCGGTTAAGACCTTCAAGTTCT TTAACACCAACAACATTTGGGCCAACCTGGCAGCCATTGATCGCGTTTTG CGTGAGCGTACCTTAAACATGGAAATTATTGTGAACAACAAGACGCTGGA GAACGGAACCCGTGTCATTCAGCTGGAGACTGCTGTGGGTGCGGCCATGA AGTGCTTTGATGGCGCCATCGGCATCAATGTGCCGCGTTCCCGTTTCTTG CCCGTGAAGAAATCTTCAGATCTGCTGCTGGTCATGTCAAATTTATATAC GCTTAAGAACGGCAGCCTGGTAATGTCGCCACAGCGAATGTTCCCTACCA CGCCGCTCGTCAAGCTGGGAGAGAACCACTTCTCGAAGGTCAAGGAGTTC CTGGGTCGCTTTGCCAACATCCCGGACATCATTGAGCTGGATCACTTGAC CGTGAGCGGAGATGTGACTTTCGGTCGTGGCGTTTCTTTGCGCGGCACTG TGATCATCATTGCTAACCATGGCGATCGTATCGATATCCCAGCTGGAGCC ATTCTGGAGAACAAGATTGTATCTGGCAATATGCGCATCTTGGACCACTA AATCAAATCCTGTACAATTGGATATCGTCTCACTAACTGTAGTCTAATTG TCTAAGTTTTATGTAGTAGCCATGTTCGCGTTTCAAATTTCCAATAACGA ATTTCATTTAGCCAATTGTTGTAAGCACAAAGTGTGTCATCTGTATATAT CGTTAAGTAGAAATCAGTCAGGGTTTTTAATCAAAATCGAATTGCAATAT GTTTTCAAAAATGTTAGTTGTAGTCGTTCAAATGAGATATAAAAGATAGC AGCTGTTGAAACCCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9343846..9344258 | 1644..1232 | 2050 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 9343411..9343779 | 2012..1644 | 1815 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 9344811..9345159 | 868..520 | 1745 | 100 | Minus |
chr3L | 24539361 | chr3L | 9350526..9350764 | 239..1 | 1180 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 9344530..9344756 | 1095..869 | 1135 | 100 | Minus |
chr3L | 24539361 | chr3L | 9345817..9346005 | 423..235 | 915 | 98.9 | Minus |
chr3L | 24539361 | chr3L | 9344334..9344474 | 1233..1093 | 705 | 100 | Minus |
chr3L | 24539361 | chr3L | 9345667..9345760 | 515..422 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 9351917..9352329 | 1644..1232 | 2065 | 100 | Minus |
3L | 28110227 | 3L | 9351474..9351850 | 2020..1644 | 1855 | 99.5 | Minus |
3L | 28110227 | 3L | 9352882..9353230 | 868..520 | 1745 | 100 | Minus |
3L | 28110227 | 3L | 9358612..9358850 | 239..1 | 1195 | 100 | Minus |
3L | 28110227 | 3L | 9352601..9352827 | 1095..869 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 9353888..9354076 | 423..235 | 945 | 100 | Minus |
3L | 28110227 | 3L | 9352405..9352545 | 1233..1093 | 705 | 100 | Minus |
3L | 28110227 | 3L | 9353738..9353831 | 515..422 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9345017..9345429 | 1644..1232 | 2065 | 100 | Minus |
3L | 28103327 | 3L | 9344574..9344950 | 2020..1644 | 1855 | 99.4 | Minus |
3L | 28103327 | 3L | 9345982..9346330 | 868..520 | 1745 | 100 | Minus |
3L | 28103327 | 3L | 9351712..9351950 | 239..1 | 1195 | 100 | Minus |
3L | 28103327 | 3L | 9345701..9345927 | 1095..869 | 1135 | 100 | Minus |
3L | 28103327 | 3L | 9346988..9347176 | 423..235 | 945 | 100 | Minus |
3L | 28103327 | 3L | 9345505..9345645 | 1233..1093 | 705 | 100 | Minus |
3L | 28103327 | 3L | 9346838..9346931 | 515..422 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1293..1366 | 1875..1805 | 118 | 67.6 | Minus |
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 50..101 | 1993..1942 | 116 | 69.2 | Minus |
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 4919..4970 | 1993..1942 | 116 | 69.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9343409..9343779 | 1644..2014 | 99 | <- | Minus |
chr3L | 9343847..9344256 | 1234..1643 | 99 | <- | Minus |
chr3L | 9344334..9344472 | 1095..1233 | 100 | <- | Minus |
chr3L | 9344531..9344756 | 869..1094 | 100 | <- | Minus |
chr3L | 9344811..9345157 | 522..868 | 100 | <- | Minus |
chr3L | 9345658..9345758 | 424..521 | 96 | <- | Minus |
chr3L | 9345817..9346003 | 237..423 | 98 | <- | Minus |
chr3L | 9350529..9350764 | 1..236 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RC | 1..1542 | 210..1751 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RC | 1..1542 | 210..1751 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RC | 1..1542 | 210..1751 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RC | 1..1542 | 210..1751 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RC | 1..1542 | 210..1751 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RC | 2..2015 | 1..2014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RC | 82..2095 | 1..2014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RC | 86..2099 | 1..2014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RC | 2..2015 | 1..2014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
UGP-RC | 86..2099 | 1..2014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9352405..9352543 | 1095..1233 | 100 | <- | Minus |
3L | 9351480..9351850 | 1644..2014 | 99 | <- | Minus |
3L | 9351918..9352327 | 1234..1643 | 100 | <- | Minus |
3L | 9352602..9352827 | 869..1094 | 100 | <- | Minus |
3L | 9352882..9353228 | 522..868 | 100 | <- | Minus |
3L | 9353729..9353829 | 424..521 | 96 | <- | Minus |
3L | 9353888..9354074 | 237..423 | 100 | <- | Minus |
3L | 9358615..9358850 | 1..236 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9352405..9352543 | 1095..1233 | 100 | <- | Minus |
3L | 9351480..9351850 | 1644..2014 | 99 | <- | Minus |
3L | 9351918..9352327 | 1234..1643 | 100 | <- | Minus |
3L | 9352602..9352827 | 869..1094 | 100 | <- | Minus |
3L | 9352882..9353228 | 522..868 | 100 | <- | Minus |
3L | 9353729..9353829 | 424..521 | 96 | <- | Minus |
3L | 9353888..9354074 | 237..423 | 100 | <- | Minus |
3L | 9358615..9358850 | 1..236 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9352405..9352543 | 1095..1233 | 100 | <- | Minus |
3L | 9351480..9351850 | 1644..2014 | 99 | <- | Minus |
3L | 9351918..9352327 | 1234..1643 | 100 | <- | Minus |
3L | 9352602..9352827 | 869..1094 | 100 | <- | Minus |
3L | 9352882..9353228 | 522..868 | 100 | <- | Minus |
3L | 9353729..9353829 | 424..521 | 96 | <- | Minus |
3L | 9353888..9354074 | 237..423 | 100 | <- | Minus |
3L | 9358615..9358850 | 1..236 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9344580..9344950 | 1644..2014 | 99 | <- | Minus |
arm_3L | 9345018..9345427 | 1234..1643 | 100 | <- | Minus |
arm_3L | 9345505..9345643 | 1095..1233 | 100 | <- | Minus |
arm_3L | 9345702..9345927 | 869..1094 | 100 | <- | Minus |
arm_3L | 9345982..9346328 | 522..868 | 100 | <- | Minus |
arm_3L | 9346829..9346929 | 424..521 | 96 | <- | Minus |
arm_3L | 9346988..9347174 | 237..423 | 100 | <- | Minus |
arm_3L | 9351715..9351950 | 1..236 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9344580..9344950 | 1644..2014 | 99 | <- | Minus |
3L | 9345018..9345427 | 1234..1643 | 100 | <- | Minus |
3L | 9345505..9345643 | 1095..1233 | 100 | <- | Minus |
3L | 9345702..9345927 | 869..1094 | 100 | <- | Minus |
3L | 9345982..9346328 | 522..868 | 100 | <- | Minus |
3L | 9346829..9346929 | 424..521 | 96 | <- | Minus |
3L | 9346988..9347174 | 237..423 | 100 | <- | Minus |
3L | 9351715..9351950 | 1..236 | 100 | Minus |
Translation from 209 to 1750
> RE14081.pep MLDVPHEAKVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLLETTEKAR QPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYSNLKSPKN EQNEIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFLDLTVQQI EHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFNQSCFPRI SREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFIEEGREYC FLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRADVKGGTLI QMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAIDRVLRER TLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPRSRFLPVK KSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSKVKEFLGR FANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPAGAILE NKIVSGNMRILDH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23744-PA | 529 | GF23744-PA | 1..529 | 1..513 | 2658 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14051-PA | 513 | GG14051-PA | 1..513 | 1..513 | 2717 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16268-PA | 511 | GH16268-PA | 1..511 | 1..513 | 2616 | 95.7 | Plus |
Dgri\GH22478-PA | 493 | GH22478-PA | 13..493 | 6..513 | 2410 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
UGP-PC | 513 | CG4347-PC | 1..513 | 1..513 | 2654 | 100 | Plus |
UGP-PD | 511 | CG4347-PD | 1..511 | 1..513 | 2630 | 99.6 | Plus |
UGP-PA | 520 | CG4347-PA | 15..520 | 8..513 | 2608 | 99.8 | Plus |
UGP-PE | 518 | CG4347-PE | 15..518 | 8..513 | 2584 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13203-PA | 520 | GI13203-PA | 13..520 | 6..513 | 2617 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18418-PA | 513 | GL18418-PA | 1..513 | 1..513 | 2645 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18125-PA | 513 | GA18125-PA | 1..513 | 1..513 | 2645 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24885-PA | 513 | GM24885-PA | 1..513 | 1..513 | 2735 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12937-PA | 531 | GD12937-PA | 1..531 | 1..513 | 2702 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11980-PA | 529 | GJ11980-PA | 1..529 | 1..513 | 2642 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24300-PA | 513 | GK24300-PA | 1..513 | 1..513 | 2637 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21254-PA | 520 | GE21254-PA | 15..520 | 8..513 | 2682 | 99.6 | Plus |
Translation from 209 to 1750
> RE14081.hyp MLDVPHEAKVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLLETTEKAR QPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYSNLKSPKN EQVCRIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFLDLTVQQ IEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFNQSCFPR ISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFIEEGREY CFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRADVKGGTL IQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAIDRVLRE RTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPRSRFLPV KKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSKVKEFLG RFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPAGAIL ENKIVSGNMRILDH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
UGP-PD | 511 | CG4347-PD | 1..511 | 1..514 | 2629 | 99.4 | Plus |
UGP-PC | 513 | CG4347-PC | 1..513 | 1..514 | 2628 | 99.4 | Plus |
UGP-PE | 518 | CG4347-PE | 15..518 | 8..514 | 2583 | 99.2 | Plus |
UGP-PA | 520 | CG4347-PA | 15..520 | 8..514 | 2582 | 99.2 | Plus |