Clone RE14081 Report

Search the DGRC for RE14081

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:140
Well:81
Vector:pFlc-1
Associated Gene/TranscriptUGP-RC
Protein status:RE14081.pep: gold
Preliminary Size:2694
Sequenced Size:2029

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4347 2003-02-13 Blastp of sequenced clone
UGP 2008-04-29 Release 5.5 accounting
UGP 2008-08-15 Release 5.9 accounting
UGP 2008-12-18 5.12 accounting

Clone Sequence Records

RE14081.complete Sequence

2029 bp (2029 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003777

> RE14081.complete
AATTGTTCGTATCGTGGATTCGGAGAAGCGGATAATAATCTTGAGAGAAT
CAATTTAATTTTACACTAAAAGTTGCGGGTGTAAAAAAGTTTCAGTGTGG
TTTCTCATTCTCTTTGCTTTCAATTTGTGTGTGTGTGTGCAGCAAAACAA
CTAAATTAGTGACGCTTAATTGCTAAATTACTCAAGTGTTAAATTTACTT
TACTTCAAAATGCTGGATGTTCCACATGAAGCTAAGGTGCGCGGCCACCA
GCGTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAACGGGATG
CACTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGACCACTGAG
AAGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCGCCGATCT
GTTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGGAACAAGA
TTCAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCTTAAGTCG
CCCAAGAACGAGCAGAATGAGATCCGCAACATGTTGGATAAATTGGTGGT
CATCAAGCTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCATGGTCCCA
AGAGTGTGATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCTGACCGTG
CAGCAAATCGAGCATCTCAACAAGACCTACGATGCCAATGTTCCGCTGGT
ACTGATGAACTCCTTTAACACCGACGAGGATACCGAGAAGATCGTGCGCA
AGTACAAAGGATTCCGTGTGCAGATCCACACCTTCAACCAGAGCTGCTTC
CCGCGCATTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACTTTGATGT
CGAAAAGGATATGGAAGCCTGGTATCCACCTGGACACGGTGACTTCTACG
ATACCTTCCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGAGGGCCGC
GAGTATTGTTTCTTGTCCAACATCGATAACCTGGGCGCCACCGTCGATCT
GAACATCCTCAATAAGCTGGTGGGCGAGGAGCGGGCCACTACTCCAGTGG
AGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGGTGGT
ACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGCTCAAGT
GCCACCAGAGCATGTGGATGACTTTAAGTCGGTTAAGACCTTCAAGTTCT
TTAACACCAACAACATTTGGGCCAACCTGGCAGCCATTGATCGCGTTTTG
CGTGAGCGTACCTTAAACATGGAAATTATTGTGAACAACAAGACGCTGGA
GAACGGAACCCGTGTCATTCAGCTGGAGACTGCTGTGGGTGCGGCCATGA
AGTGCTTTGATGGCGCCATCGGCATCAATGTGCCGCGTTCCCGTTTCTTG
CCCGTGAAGAAATCTTCAGATCTGCTGCTGGTCATGTCAAATTTATATAC
GCTTAAGAACGGCAGCCTGGTAATGTCGCCACAGCGAATGTTCCCTACCA
CGCCGCTCGTCAAGCTGGGAGAGAACCACTTCTCGAAGGTCAAGGAGTTC
CTGGGTCGCTTTGCCAACATCCCGGACATCATTGAGCTGGATCACTTGAC
CGTGAGCGGAGATGTGACTTTCGGTCGTGGCGTTTCTTTGCGCGGCACTG
TGATCATCATTGCTAACCATGGCGATCGTATCGATATCCCAGCTGGAGCC
ATTCTGGAGAACAAGATTGTATCTGGCAATATGCGCATCTTGGACCACTA
AATCAAATCCTGTACAATTGGATATCGTCTCACTAACTGTAGTCTAATTG
TCTAAGTTTTATGTAGTAGCCATGTTCGCGTTTCAAATTTCCAATAACGA
ATTTCATTTAGCCAATTGTTGTAAGCACAAAGTGTGTCATCTGTATATAT
CGTTAAGTAGAAATCAGTCAGGGTTTTTAATCAAAATCGAATTGCAATAT
GTTTTCAAAAATGTTAGTTGTAGTCGTTCAAATGAGATATAAAAGATAGC
AGCTGTTGAAACCCAAAAAAAAAAAAAAA

RE14081.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-RC 2095 UGP-RC 82..2093 1..2012 10060 100 Plus
UGP-RD 2197 UGP-RD 93..2106 1..2020 9955 99.6 Plus
UGP-RA 2110 UGP-RA 310..2093 237..2020 8890 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9343846..9344258 1644..1232 2050 99.8 Minus
chr3L 24539361 chr3L 9343411..9343779 2012..1644 1815 99.5 Minus
chr3L 24539361 chr3L 9344811..9345159 868..520 1745 100 Minus
chr3L 24539361 chr3L 9350526..9350764 239..1 1180 99.6 Minus
chr3L 24539361 chr3L 9344530..9344756 1095..869 1135 100 Minus
chr3L 24539361 chr3L 9345817..9346005 423..235 915 98.9 Minus
chr3L 24539361 chr3L 9344334..9344474 1233..1093 705 100 Minus
chr3L 24539361 chr3L 9345667..9345760 515..422 470 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9351917..9352329 1644..1232 2065 100 Minus
3L 28110227 3L 9351474..9351850 2020..1644 1855 99.5 Minus
3L 28110227 3L 9352882..9353230 868..520 1745 100 Minus
3L 28110227 3L 9358612..9358850 239..1 1195 100 Minus
3L 28110227 3L 9352601..9352827 1095..869 1135 100 Minus
3L 28110227 3L 9353888..9354076 423..235 945 100 Minus
3L 28110227 3L 9352405..9352545 1233..1093 705 100 Minus
3L 28110227 3L 9353738..9353831 515..422 470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9345017..9345429 1644..1232 2065 100 Minus
3L 28103327 3L 9344574..9344950 2020..1644 1855 99.4 Minus
3L 28103327 3L 9345982..9346330 868..520 1745 100 Minus
3L 28103327 3L 9351712..9351950 239..1 1195 100 Minus
3L 28103327 3L 9345701..9345927 1095..869 1135 100 Minus
3L 28103327 3L 9346988..9347176 423..235 945 100 Minus
3L 28103327 3L 9345505..9345645 1233..1093 705 100 Minus
3L 28103327 3L 9346838..9346931 515..422 470 100 Minus
Blast to na_te.dros performed 2019-03-16 04:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 1293..1366 1875..1805 118 67.6 Minus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 50..101 1993..1942 116 69.2 Minus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 4919..4970 1993..1942 116 69.2 Minus

RE14081.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:48:12 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9343409..9343779 1644..2014 99 <- Minus
chr3L 9343847..9344256 1234..1643 99 <- Minus
chr3L 9344334..9344472 1095..1233 100 <- Minus
chr3L 9344531..9344756 869..1094 100 <- Minus
chr3L 9344811..9345157 522..868 100 <- Minus
chr3L 9345658..9345758 424..521 96 <- Minus
chr3L 9345817..9346003 237..423 98 <- Minus
chr3L 9350529..9350764 1..236 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:56:00 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RC 1..1542 210..1751 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:52:25 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RC 1..1542 210..1751 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:41:32 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RC 1..1542 210..1751 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:43:32 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RC 1..1542 210..1751 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:50:28 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RC 1..1542 210..1751 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:06:25 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RC 2..2015 1..2014 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:52:25 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RC 82..2095 1..2014 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:32 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RC 86..2099 1..2014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:43:32 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RC 2..2015 1..2014 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:50:28 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
UGP-RC 86..2099 1..2014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:12 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9352405..9352543 1095..1233 100 <- Minus
3L 9351480..9351850 1644..2014 99 <- Minus
3L 9351918..9352327 1234..1643 100 <- Minus
3L 9352602..9352827 869..1094 100 <- Minus
3L 9352882..9353228 522..868 100 <- Minus
3L 9353729..9353829 424..521 96 <- Minus
3L 9353888..9354074 237..423 100 <- Minus
3L 9358615..9358850 1..236 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:12 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9352405..9352543 1095..1233 100 <- Minus
3L 9351480..9351850 1644..2014 99 <- Minus
3L 9351918..9352327 1234..1643 100 <- Minus
3L 9352602..9352827 869..1094 100 <- Minus
3L 9352882..9353228 522..868 100 <- Minus
3L 9353729..9353829 424..521 96 <- Minus
3L 9353888..9354074 237..423 100 <- Minus
3L 9358615..9358850 1..236 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:12 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9352405..9352543 1095..1233 100 <- Minus
3L 9351480..9351850 1644..2014 99 <- Minus
3L 9351918..9352327 1234..1643 100 <- Minus
3L 9352602..9352827 869..1094 100 <- Minus
3L 9352882..9353228 522..868 100 <- Minus
3L 9353729..9353829 424..521 96 <- Minus
3L 9353888..9354074 237..423 100 <- Minus
3L 9358615..9358850 1..236 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:32 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9344580..9344950 1644..2014 99 <- Minus
arm_3L 9345018..9345427 1234..1643 100 <- Minus
arm_3L 9345505..9345643 1095..1233 100 <- Minus
arm_3L 9345702..9345927 869..1094 100 <- Minus
arm_3L 9345982..9346328 522..868 100 <- Minus
arm_3L 9346829..9346929 424..521 96 <- Minus
arm_3L 9346988..9347174 237..423 100 <- Minus
arm_3L 9351715..9351950 1..236 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:14:20 Download gff for RE14081.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9344580..9344950 1644..2014 99 <- Minus
3L 9345018..9345427 1234..1643 100 <- Minus
3L 9345505..9345643 1095..1233 100 <- Minus
3L 9345702..9345927 869..1094 100 <- Minus
3L 9345982..9346328 522..868 100 <- Minus
3L 9346829..9346929 424..521 96 <- Minus
3L 9346988..9347174 237..423 100 <- Minus
3L 9351715..9351950 1..236 100   Minus

RE14081.pep Sequence

Translation from 209 to 1750

> RE14081.pep
MLDVPHEAKVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLLETTEKAR
QPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYSNLKSPKN
EQNEIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFLDLTVQQI
EHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFNQSCFPRI
SREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFIEEGREYC
FLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRADVKGGTLI
QMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAIDRVLRER
TLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPRSRFLPVK
KSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSKVKEFLGR
FANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPAGAILE
NKIVSGNMRILDH*

RE14081.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23744-PA 529 GF23744-PA 1..529 1..513 2658 94.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14051-PA 513 GG14051-PA 1..513 1..513 2717 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16268-PA 511 GH16268-PA 1..511 1..513 2616 95.7 Plus
Dgri\GH22478-PA 493 GH22478-PA 13..493 6..513 2410 90.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-PC 513 CG4347-PC 1..513 1..513 2654 100 Plus
UGP-PD 511 CG4347-PD 1..511 1..513 2630 99.6 Plus
UGP-PA 520 CG4347-PA 15..520 8..513 2608 99.8 Plus
UGP-PE 518 CG4347-PE 15..518 8..513 2584 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13203-PA 520 GI13203-PA 13..520 6..513 2617 96.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18418-PA 513 GL18418-PA 1..513 1..513 2645 96.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18125-PA 513 GA18125-PA 1..513 1..513 2645 96.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24885-PA 513 GM24885-PA 1..513 1..513 2735 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12937-PA 531 GD12937-PA 1..531 1..513 2702 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11980-PA 529 GJ11980-PA 1..529 1..513 2642 94.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24300-PA 513 GK24300-PA 1..513 1..513 2637 95.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21254-PA 520 GE21254-PA 15..520 8..513 2682 99.6 Plus

RE14081.hyp Sequence

Translation from 209 to 1750

> RE14081.hyp
MLDVPHEAKVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLLETTEKAR
QPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYSNLKSPKN
EQVCRIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFLDLTVQQ
IEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFNQSCFPR
ISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFIEEGREY
CFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRADVKGGTL
IQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAIDRVLRE
RTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPRSRFLPV
KKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSKVKEFLG
RFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPAGAIL
ENKIVSGNMRILDH*

RE14081.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-PD 511 CG4347-PD 1..511 1..514 2629 99.4 Plus
UGP-PC 513 CG4347-PC 1..513 1..514 2628 99.4 Plus
UGP-PE 518 CG4347-PE 15..518 8..514 2583 99.2 Plus
UGP-PA 520 CG4347-PA 15..520 8..514 2582 99.2 Plus