Clone RE14108 Report

Search the DGRC for RE14108

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:141
Well:8
Vector:pFlc-1
Associated Gene/TranscriptTaz-RA
Protein status:RE14108.pep: gold
Preliminary Size:2066
Sequenced Size:1714

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8766 2001-12-14 Blastp of sequenced clone
CG8766 2002-01-01 Sim4 clustering to Release 2
CG8766 2003-01-01 Sim4 clustering to Release 3
tafazzin 2008-04-29 Release 5.5 accounting
tafazzin 2008-08-15 Release 5.9 accounting
tafazzin 2008-12-18 5.12 accounting

Clone Sequence Records

RE14108.complete Sequence

1714 bp (1714 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071059

> RE14108.complete
AAAAATGTCCAAACATCAGTTGGATGTAAATGGCAAAAAACAGCTGTTTC
AGATTGGTTTATCCTCAAATTTCTAGTTTCTGTAGATTCTATTGGCCTTG
GAACTTTCGCCGCTCCCCACCACAATAACGCCCCCTTCAGACATGCGCCA
AGTGAACACGGCGCCTCCTGCCCGTACGCCCATGAGATTGCTGCTGAGGT
GAAGAAGTGGCGGTTGGGTGAAGAAGCAAGCAGTGCGCGCGTCCCAAATT
GCAAAGTGATTTTTATTCGGCCCACAAAAGCCGGTTATGTAAAGACCGTA
TAGGCCAAATATCTACACACATATCGTACTCGTTAAATTAAGAACTTGTA
GAAATGTTTATGGTCGTGTGTTCCAATTTAAGGCGTCCCGGGCACGTGGG
CGCCGCATCTGCAGCGCGAAATATAAACTGGCTGATCAGCGAGGGATATA
CACCGCCGATCCGGGCAATGGCGCGGCCATACGTCCAAGCTCCGGAGGCG
CGGCCAGTGCCCGATGAGCGCTATCCGGGCAGCCAGCAGGATAGGAAGGA
TATCGCCACCCAGACTGTGCGGAGCAGCAAGCCCAAAGACCTGCGACCGC
CTTCGCCGCCGACGCCGTCCCAGACCCTAAACTCCTCTTCCCTTCCGCCC
CCAATGTCCGACCAGGATGCTGATCCCTCCCTGGATGTGCCCACCGGCGT
GGCGATGCCCTACAACATCGACTGGATATTCCCTAGGCTGAGAAACCCCT
CGAAGTTCTGGTACGTGGTCAGCCAGTTCGTCGTCTCCGCCGTTGGAATC
TTCAGCAAGGTTGTGCTGATGTTTTTGAATAAACCCCGCGTCTATAACAG
GGAGCGACTGATCCAGCTGATAACGAAGCGACCCAAGGGCATTCCCCTGG
TCACCGTGTCCAACCACTACTCCTGCTTCGACGATCCTGGGCTGTGGGGC
TGCCTTCCCCTGGGAATTGTCTGCAATACCTATAAAATTCGTTGGTCAAT
GGCCGCTCACGACATTTGCTTCACTAACAAGCTGCACTCGCTCTTCTTCA
TGTTTGGCAAGTGCATACCTGTTGTGCGTGGCATCGGTGTCTACCAGGAT
GCCATCAACCTGTGCATCGAGAAGGCCGCACTGGGCCATTGGATCCATGT
GTTTCCCGAAGGTAAGGTGAACATGGATAAGGAGGAGCTGCGTCTCAAGT
GGGGCGTGGGCAGGATCATCTACGAGTCGCCAAAGATCCCCATAATTCTG
CCCATGTGGCACGAGGGCATGGACGATCTGTTGCCCAATGTGGAGCCCTA
TGTGATACAGCGTGGTAAGCAGGTGACGCTGAATGTTGGCCAGCCATTGG
ACCTCAACGACTTTATTCTGGACCTAAAAAAACGACAAGTACCGGAGCCA
ACGGCGCGGAAGCTCATTACAGACAAAATCCAGGAAGCCTTTCGGGACTT
GCGGGCGGAGACAGAGAAATTGCACAGAGAGCGCAACTAGAACGTGATCA
TGGATGAGCATAGACATTTGTAATAATATTTATTTGTATAGTATTAAGCC
TAAAATGAACCCTCGAAGCCCTTTTGATCCATTTATTATAATTATAATTA
TTTCCGTGTATTGCGACTAGTTCTTCAAGATGTATTTGCTGGATAGGAAC
ATTAAGTAAATCAGTGTGCATTATTAGTATAAATATACAATTGAAACGAA
AAAAAAAAAAAAAA

RE14108.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-RA 1775 Taz-RA 1..1696 2..1697 8480 100 Plus
Taz.a 1779 Taz.a 1..1445 2..1446 7225 100 Plus
Taz.c 1374 Taz.c 70..1040 476..1446 4855 100 Plus
Taz.a 1779 Taz.a 1451..1702 1446..1697 1260 100 Plus
Taz.c 1374 Taz.c 1046..1297 1446..1697 1260 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8643141..8643615 476..2 2345 99.6 Minus
chr2R 21145070 chr2R 8640631..8641021 1446..1056 1955 100 Minus
chr2R 21145070 chr2R 8641612..8641955 819..476 1675 99.1 Minus
chr2R 21145070 chr2R 8640306..8640558 1697..1445 1265 100 Minus
chr2R 21145070 chr2R 8641094..8641331 1057..820 1190 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12755936..12756410 476..2 2375 100 Minus
2R 25286936 2R 12753427..12753817 1446..1056 1955 100 Minus
2R 25286936 2R 12754408..12754751 819..476 1720 100 Minus
2R 25286936 2R 12753102..12753354 1697..1445 1265 100 Minus
2R 25286936 2R 12753890..12754127 1057..820 1190 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12757135..12757609 476..2 2375 100 Minus
2R 25260384 2R 12754626..12755016 1446..1056 1955 100 Minus
2R 25260384 2R 12755607..12755950 819..476 1720 100 Minus
2R 25260384 2R 12754301..12754553 1697..1445 1265 100 Minus
2R 25260384 2R 12755089..12755326 1057..820 1190 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:18:00 has no hits.

RE14108.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:18:59 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8640632..8641020 1057..1445 100 <- Minus
chr2R 8641095..8641331 820..1056 100 <- Minus
chr2R 8641612..8641954 477..819 99 <- Minus
chr2R 8643141..8643615 1..476 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:56:01 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
tafazzin-RA 1..1137 354..1490 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:10:08 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 1..1137 354..1490 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:45:21 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 1..1137 354..1490 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:18 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
tafazzin-RA 1..1137 354..1490 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:15 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 1..1137 354..1490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:53 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
tafazzin-RA 1..1696 2..1698 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:10:08 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 1..1696 2..1698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:45:21 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 4..1700 1..1698 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:18 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
tafazzin-RA 1..1696 2..1698 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:15 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 4..1700 1..1698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:18:59 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12753101..12753353 1446..1698 99 <- Minus
2R 12753428..12753816 1057..1445 100 <- Minus
2R 12753891..12754127 820..1056 100 <- Minus
2R 12754408..12754750 477..819 100 <- Minus
2R 12755936..12756410 1..476 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:18:59 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12753101..12753353 1446..1698 99 <- Minus
2R 12753428..12753816 1057..1445 100 <- Minus
2R 12753891..12754127 820..1056 100 <- Minus
2R 12754408..12754750 477..819 100 <- Minus
2R 12755936..12756410 1..476 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:18:59 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12753101..12753353 1446..1698 99 <- Minus
2R 12753428..12753816 1057..1445 100 <- Minus
2R 12753891..12754127 820..1056 100 <- Minus
2R 12754408..12754750 477..819 100 <- Minus
2R 12755936..12756410 1..476 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:45:21 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8640606..8640858 1446..1698 99 <- Minus
arm_2R 8640933..8641321 1057..1445 100 <- Minus
arm_2R 8641396..8641632 820..1056 100 <- Minus
arm_2R 8641913..8642255 477..819 100 <- Minus
arm_2R 8643441..8643915 1..476 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:30 Download gff for RE14108.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12754300..12754552 1446..1698 99 <- Minus
2R 12754627..12755015 1057..1445 100 <- Minus
2R 12755090..12755326 820..1056 100 <- Minus
2R 12755607..12755949 477..819 100 <- Minus
2R 12757135..12757609 1..476 99   Minus

RE14108.pep Sequence

Translation from 353 to 1489

> RE14108.pep
MFMVVCSNLRRPGHVGAASAARNINWLISEGYTPPIRAMARPYVQAPEAR
PVPDERYPGSQQDRKDIATQTVRSSKPKDLRPPSPPTPSQTLNSSSLPPP
MSDQDADPSLDVPTGVAMPYNIDWIFPRLRNPSKFWYVVSQFVVSAVGIF
SKVVLMFLNKPRVYNRERLIQLITKRPKGIPLVTVSNHYSCFDDPGLWGC
LPLGIVCNTYKIRWSMAAHDICFTNKLHSLFFMFGKCIPVVRGIGVYQDA
INLCIEKAALGHWIHVFPEGKVNMDKEELRLKWGVGRIIYESPKIPIILP
MWHEGMDDLLPNVEPYVIQRGKQVTLNVGQPLDLNDFILDLKKRQVPEPT
ARKLITDKIQEAFRDLRAETEKLHRERN*

RE14108.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13095-PA 378 GF13095-PA 1..377 3..377 1337 68.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22553-PA 378 GG22553-PA 1..378 1..378 1855 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19953-PA 340 GH19953-PA 9..339 40..377 1220 67.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-PA 378 CG8766-PA 1..378 1..378 2027 100 Plus
Taz-PC 338 CG8766-PC 2..338 42..378 1811 100 Plus
Taz-PD 278 CG8766-PD 1..278 101..378 1496 100 Plus
Taz-PB 278 CG8766-PB 1..278 101..378 1496 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19910-PA 360 GI19910-PA 9..359 40..377 1166 62.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17727-PA 388 GL17727-PA 1..387 1..378 1242 61.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21304-PB 390 GA21304-PB 1..389 1..378 1256 62.7 Plus
Dpse\GA21304-PC 353 GA21304-PC 14..352 43..378 1214 66.6 Plus
Dpse\GA21304-PA 277 GA21304-PA 3..276 105..378 1187 75.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20337-PA 378 GM20337-PA 1..378 1..378 1960 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25815-PA 278 GD25815-PA 1..278 101..378 1466 97.5 Plus
Dsim\GD25814-PA 91 GD25814-PA 1..65 1..65 315 92.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15079-PA 352 GJ15079-PA 4..351 35..377 1162 60.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21686-PA 379 GK21686-PA 1..378 1..377 1208 61.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13423-PA 378 GE13423-PA 1..378 1..378 1832 91.5 Plus

RE14108.hyp Sequence

Translation from 353 to 1489

> RE14108.hyp
MFMVVCSNLRRPGHVGAASAARNINWLISEGYTPPIRAMARPYVQAPEAR
PVPDERYPGSQQDRKDIATQTVRSSKPKDLRPPSPPTPSQTLNSSSLPPP
MSDQDADPSLDVPTGVAMPYNIDWIFPRLRNPSKFWYVVSQFVVSAVGIF
SKVVLMFLNKPRVYNRERLIQLITKRPKGIPLVTVSNHYSCFDDPGLWGC
LPLGIVCNTYKIRWSMAAHDICFTNKLHSLFFMFGKCIPVVRGIGVYQDA
INLCIEKAALGHWIHVFPEGKVNMDKEELRLKWGVGRIIYESPKIPIILP
MWHEGMDDLLPNVEPYVIQRGKQVTLNVGQPLDLNDFILDLKKRQVPEPT
ARKLITDKIQEAFRDLRAETEKLHRERN*

RE14108.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-PA 378 CG8766-PA 1..378 1..378 2027 100 Plus
Taz-PC 338 CG8766-PC 2..338 42..378 1811 100 Plus
Taz-PD 278 CG8766-PD 1..278 101..378 1496 100 Plus
Taz-PB 278 CG8766-PB 1..278 101..378 1496 100 Plus