BDGP Sequence Production Resources |
Search the DGRC for RE14116
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 141 |
Well: | 16 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mago-RA |
Protein status: | RE14116.pep: gold |
Preliminary Size: | 680 |
Sequenced Size: | 1116 |
Gene | Date | Evidence |
---|---|---|
CG9401 | 2001-12-14 | Blastp of sequenced clone |
CG9401 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9401 | 2003-01-01 | Sim4 clustering to Release 3 |
mago | 2008-04-29 | Release 5.5 accounting |
mago | 2008-08-15 | Release 5.9 accounting |
mago | 2008-12-18 | 5.12 accounting |
1116 bp (1116 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071060
> RE14116.complete ATTCCGTGTGTTTTCCCATCTCTAACGCGTTGTAGTAAAGGAAAAAGAGT GGGAAACCAAAAATTGATATTTTTCTGAAAGTCTTTCAAAGTTACGCTTT AAACTAGAAGCAATCATGTCCACGGAGGACTTTTACCTACGCTACTACGT CGGACACAAGGGCAAGTTCGGGCACGAATTCTTGGAGTTCGAGTTCCGGC CGGATGGCAAGCTGCGGTACGCCAACAACTCCAACTACAAGAACGACACC ATGATCCGCAAGGAGGCCTTCGTCCACCAGTCCGTGATGGAAGAACTGAA GCGAATCATCATCGACTCGGAGATCATGCAGGAGGACGATCTGCCCTGGC CGCCACCAGATCGCGTGGGTCGACAGGAACTGGAGATCGTCATCGGAGAC GAGCACATCTCGTTCACCACCTCGAAAACGGGATCATTGGTGGACGTGAA CCGGTCAAAAGATCCCGAGGGCCTGCGATGCTTTTACTACCTGGTGCAGG ATCTCAAGTGCCTGGTCTTCTCACTCATCGGCCTGCATTTCAAGATCAAG CCCATATAAGCCGTAGCCACCACCTCAAGCATAGCCTATTTATCGGACGG ACACATCGTATTTTATAATGGAACTTCTACGATACTTGTAATTGTATAAG CTATACCTTTGTACTTTTTGGTACAGTTTGCAGTGAATAAAAAAGGATTG GAAGATACTTTGTTTTCAAAGTCTTGTGTACAGTCTAGATTGTGCTATAG AAGTAAATAGCAAATCTTCGATGTAGTAGCAGACAACAAGTTTAACAATA ATAGCAAACACAATAGTAAACCATTTAACTTTTGATGTTATAATGTGTAG GTATATTTGAAAAATACAATTTAATATCTATTGTGTTTGAATAATATACA TACTCGAGATAAAAATTTAAAGTCCTTTACATTTGTACAATTCGTATATG TCTAAAACAGCTTAAGCTAAGTGATTAATATCTCACAAACTGGCAAATTG TCTTAACGTTTAAGTACAAGCAGTAACTTAGCCTAAGATAATGATCGGTA TCTTAAGAAACTGGAATAAAATACGCACTCACATACGGTTTTGAGACTTG CAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 5514..5582 | 759..828 | 131 | 67.1 | Plus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 6551..6666 | 737..617 | 114 | 60.7 | Minus |
Stalker | 7256 | Stalker STALKER 7256bp | 6445..6560 | 737..617 | 114 | 60.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17015003..17015378 | 1..376 | 100 | -> | Plus |
chr2R | 17015437..17016160 | 377..1101 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mago-RA | 1..444 | 116..559 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mago-RA | 1..444 | 116..559 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mago-RA | 1..444 | 116..559 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mago-RA | 1..444 | 116..559 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mago-RA | 1..444 | 116..559 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mago-RA | 1..1101 | 1..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mago-RA | 1..1101 | 1..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mago-RA | 3..1103 | 1..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mago-RA | 1..1101 | 1..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mago-RA | 3..1103 | 1..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21128579..21128954 | 1..376 | 100 | -> | Plus |
2R | 21129013..21129737 | 377..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21128579..21128954 | 1..376 | 100 | -> | Plus |
2R | 21129013..21129737 | 377..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21128579..21128954 | 1..376 | 100 | -> | Plus |
2R | 21129013..21129737 | 377..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17016084..17016459 | 1..376 | 100 | -> | Plus |
arm_2R | 17016518..17017242 | 377..1101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21129778..21130153 | 1..376 | 100 | -> | Plus |
2R | 21130212..21130936 | 377..1101 | 100 | Plus |
Translation from 115 to 558
> RE14116.pep MSTEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE AFVHQSVMEELKRIIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISF TTSKTGSLVDVNRSKDPEGLRCFYYLVQDLKCLVFSLIGLHFKIKPI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11935-PA | 147 | GF11935-PA | 1..147 | 1..147 | 783 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22089-PA | 147 | GG22089-PA | 1..147 | 1..147 | 783 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20720-PA | 147 | GH20720-PA | 1..147 | 1..147 | 783 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mago-PA | 147 | CG9401-PA | 1..147 | 1..147 | 783 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20805-PA | 147 | GI20805-PA | 1..147 | 1..147 | 783 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10152-PA | 147 | GL10152-PA | 1..147 | 1..147 | 779 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21763-PA | 147 | GA21763-PA | 1..147 | 1..147 | 779 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15806-PA | 147 | GM15806-PA | 1..147 | 1..147 | 783 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11565-PA | 147 | GD11565-PA | 1..147 | 1..147 | 783 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20538-PA | 147 | GJ20538-PA | 1..147 | 1..147 | 783 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20976-PA | 147 | GK20976-PA | 1..147 | 1..147 | 776 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\mago-PA | 147 | GE12169-PA | 1..147 | 1..147 | 783 | 100 | Plus |
Translation from 115 to 558
> RE14116.hyp MSTEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE AFVHQSVMEELKRIIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISF TTSKTGSLVDVNRSKDPEGLRCFYYLVQDLKCLVFSLIGLHFKIKPI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mago-PA | 147 | CG9401-PA | 1..147 | 1..147 | 783 | 100 | Plus |