Clone RE14150 Report

Search the DGRC for RE14150

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:141
Well:50
Vector:pFlc-1
Associated Gene/TranscriptCG2556-RA
Protein status:RE14150.pep: gold
Sequenced Size:2288

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2556 2007-09-25 DGC5 pick
CG2556 2008-04-29 Release 5.5 accounting
CG2556 2008-04-29 Picked prior to 5.5
CG2556 2008-08-15 Release 5.9 accounting
CG2556 2008-12-18 5.12 accounting

Clone Sequence Records

RE14150.complete Sequence

2288 bp assembled on 2007-11-15

GenBank Submission: BT031287

> RE14150.complete
AGTTGTGTTTTCGATTGCTCTGCGTGCTGGTCGTTCCTCCAAGTCTGCAA
TTCTGCACAATTTTACAATTATTCTTCGCGCGTACTCCAACTCCCCATTC
ATCCGTCTGTTTGTTTGGTTGTTTCCTTTCTTCGTTGCACCTTTTGCGCG
CGCGCAACCGCCGATAAACAGAGAAAAGAAGAAAAGGAGAAATTCTGCAA
CAAACACTGGAAGTGCAATTTTAAGTAGACGATCCCGTGAATGTTTTCCA
GTTGAAACATTTACTATCGTTTCATTTTTTTTTTAAATTTTGTTCTGTTA
AGTGTTGAAAAAAAAGTTTTTGCAGCCACAGCAAACTAAAACTTTTCATC
AAAATGCAGCAGAAAGTCGAAGAGAAAATCGATCCCCTGACACGCATTCA
GGAGGAGATCAAGGAGGTAGTGCGGCGCGAGGAGGAGTACCGCCAGCTGG
CCACACTGTCGTCCAGCGCCTCGATCACTTCCGCTTCGCCGGATTTCGAG
ACATACACGGTTAATAGTAACTTTGAGCCGAAACTGCAGCAGGATGATGA
GCACGATCTGGTCGAAAGTCCAGATCAGGACCAGGGCATGCTCGTTACCG
CCCAGCCGGCGGCCGTGCAGACCACCTCGCTCCTGCTGCCCATCGACGAG
CTGTCCAACACACCATCGCTGGCCTCCAGTGTGAATAGCGCCAAGGAGGA
GAGCCTCGATGGCCAGCACTCGGATGATTCGGGCATTTCGGCCTCCTCGC
AGAGCAACATCCTCATCACTGGGATCACCACGAATGTGGCCAAGCAGCAG
CCACTCAAACTGACCGTGGTGACGCGTCAGGAGCAGCGTTACATTGGGCC
CAACTGCTATAATCTGACACCTGAACCGCCACAGCAGAAGCTGATCACCC
GCACCATATCCACGCCCCAGCTGAGTGGTCTGCCCCAGAAGCGGCAGTTT
GCCTTCGGTGGCGCCACCAAGGGTGTGATGCAGCGCTTCATTGCCTCGCA
TGGCAAGTTGGGCAACACTAGCCCGCTGCCGGCTGCATCTCCAATGACGT
TGTCCCTGGGCGCCGCCAATGGTAATGGCGGCCTAAATGTCAATGGCCAG
ATCAACAATATCAGCAGCAGCAACAATAACAACAACAACAACAACAACAC
CCTCAAGCTGAACACTCGCACAGCCATGGCTTTCCTGGAGTCTGGAGGTT
CCACGGGCGGCATCAACTCGTCATCGGCGGCCCTATCGTCGGCGGCTATC
GAACGCGACTCGGAAGGCAGGCCCCTGCGACGAGGATATGTCCCCGTTGA
GCAGAAGATTCAGCGTGAGCTGCAGGATCTGAAGTCACGCGAATCGGAAT
TGAAGCGTCTGCGCAAGATCAACAGGCAGAACACACTGAAGGCCTCCCTG
GACAAGCTGCAACTCAGCACAGATGATGAGGCCGATGCAGATGATGATGA
TGAGGACTCCGAGGTGGAGCACTGCTATGGGCCCGGAAAACTGCGCAATG
CCCAGTCCACACAGGAACTTGATAGGAATGGAAACGAGCAGGACATCGTT
CACAAGCCATCGGGTAATCGCAGTCTGAACGCAACCGCCTATATAGCCAA
TGGAATCAGCAATGGCAATGGCAACGGCATGCGTCCGGCGATGTCGCTGG
CCCAGCTCTGCGATCTGACGCCGGAGGAGGCGCCCTCATCGCGTGGACTC
ATCGCCCAGTGGGAGAATCTGATCAAGAAGAACGCCGAGGTGGGAACGGT
CGAGGCGATCATCTAAAGAATGTGGGTCGGGTACCCTTGCAGAAAACGGC
AAAACAAAAAAGATGAAATACAAAAACATACACACCAACGACCTGGTGCA
GAGCAGACCAAATTATTTAATATATAGTGTCCACACTAACACACTTGATC
CTCTCACTTCTCCGAGTCCACGTCCACGTCCACGTCAACGTCCAGGTCCT
TCTCCTTCTTCTCCCTCTTCACCTGCGAAAGCTGCTTATCAACGAATTAA
TCTTAATGCCAATCAATGGGAATTGAAATTATAACGAAATTGAATTGCCT
GTACTTAAAGCGATTTATATGTGTTATTTGTAATGTGTACGTGAACTGTT
CGAGAAATCTATTGTATATAAATAATTCTTCGTGTTTCCAGTGCGAGTAC
AGTCGACTTGCTTATAATTTATTACAAATCAACTTTATATATACCATATA
TGAAAGTATATAAACAAAATACTATATGTACGAAATCAATATGAGAAAAC
GATTAAAAAAAATAAAAAAAATAAAAAAAAAAAAAAAA

RE14150.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2556-RA 2415 CG2556-RA 79..2351 1..2273 11365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12405371..12406404 373..1409 5075 99.5 Plus
chrX 22417052 chrX 12406710..12407436 1531..2271 3395 97.8 Plus
chrX 22417052 chrX 12388191..12388564 1..374 1840 99.5 Plus
chrX 22417052 chrX 12406531..12406653 1409..1531 615 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12514482..12515518 373..1409 5185 100 Plus
X 23542271 X 12515824..12516566 1531..2273 3715 100 Plus
X 23542271 X 12497220..12497593 1..374 1870 100 Plus
X 23542271 X 12515645..12515767 1409..1531 615 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12522580..12523616 373..1409 5185 100 Plus
X 23527363 X 12523922..12524664 1531..2273 3715 100 Plus
X 23527363 X 12505318..12505691 1..374 1870 100 Plus
X 23527363 X 12523743..12523865 1409..1531 615 100 Plus
Blast to na_te.dros performed 2019-03-16 15:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2433..2497 1092..1155 187 78.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2483..2535 1096..1148 157 77.4 Plus

RE14150.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:37:50 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12388191..12388564 1..374 99 -> Plus
chrX 12405373..12406403 375..1408 95 -> Plus
chrX 12406531..12406653 1409..1531 100 -> Plus
chrX 12406711..12407416 1532..2254 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:47:21 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
CG2556-RA 1..1413 354..1766 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:06:08 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
CG2556-RA 1..1413 354..1766 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:50:14 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
CG2556-RA 1..1413 354..1766 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:52:28 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
CG2556-RA 1..1413 354..1766 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:50:44 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
CG2556-RA 1..1413 354..1766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:20 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
CG2556-RA 60..2313 1..2254 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:06:08 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
CG2556-RA 60..2313 1..2254 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:50:14 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
CG2556-RA 33..2286 1..2254 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:52:28 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
CG2556-RA 60..2313 1..2254 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:50:44 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
CG2556-RA 33..2286 1..2254 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:37:50 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
X 12497220..12497593 1..374 100 -> Plus
X 12514484..12515517 375..1408 100 -> Plus
X 12515645..12515767 1409..1531 100 -> Plus
X 12515825..12516547 1532..2254 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:37:50 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
X 12497220..12497593 1..374 100 -> Plus
X 12514484..12515517 375..1408 100 -> Plus
X 12515645..12515767 1409..1531 100 -> Plus
X 12515825..12516547 1532..2254 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:37:50 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
X 12497220..12497593 1..374 100 -> Plus
X 12514484..12515517 375..1408 100 -> Plus
X 12515645..12515767 1409..1531 100 -> Plus
X 12515825..12516547 1532..2254 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:50:14 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12391253..12391626 1..374 100 -> Plus
arm_X 12408517..12409550 375..1408 100 -> Plus
arm_X 12409678..12409800 1409..1531 100 -> Plus
arm_X 12409858..12410580 1532..2254 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:58:23 Download gff for RE14150.complete
Subject Subject Range Query Range Percent Splice Strand
X 12505318..12505691 1..374 100 -> Plus
X 12522582..12523615 375..1408 100 -> Plus
X 12523743..12523865 1409..1531 100 -> Plus
X 12523923..12524645 1532..2254 100   Plus

RE14150.hyp Sequence

Translation from 353 to 1765

> RE14150.hyp
MQQKVEEKIDPLTRIQEEIKEVVRREEEYRQLATLSSSASITSASPDFET
YTVNSNFEPKLQQDDEHDLVESPDQDQGMLVTAQPAAVQTTSLLLPIDEL
SNTPSLASSVNSAKEESLDGQHSDDSGISASSQSNILITGITTNVAKQQP
LKLTVVTRQEQRYIGPNCYNLTPEPPQQKLITRTISTPQLSGLPQKRQFA
FGGATKGVMQRFIASHGKLGNTSPLPAASPMTLSLGAANGNGGLNVNGQI
NNISSSNNNNNNNNNTLKLNTRTAMAFLESGGSTGGINSSSAALSSAAIE
RDSEGRPLRRGYVPVEQKIQRELQDLKSRESELKRLRKINRQNTLKASLD
KLQLSTDDEADADDDDEDSEVEHCYGPGKLRNAQSTQELDRNGNEQDIVH
KPSGNRSLNATAYIANGISNGNGNGMRPAMSLAQLCDLTPEEAPSSRGLI
AQWENLIKKNAEVGTVEAII*

RE14150.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2556-PA 470 CG2556-PA 1..470 1..470 2371 100 Plus

RE14150.pep Sequence

Translation from 353 to 1765

> RE14150.pep
MQQKVEEKIDPLTRIQEEIKEVVRREEEYRQLATLSSSASITSASPDFET
YTVNSNFEPKLQQDDEHDLVESPDQDQGMLVTAQPAAVQTTSLLLPIDEL
SNTPSLASSVNSAKEESLDGQHSDDSGISASSQSNILITGITTNVAKQQP
LKLTVVTRQEQRYIGPNCYNLTPEPPQQKLITRTISTPQLSGLPQKRQFA
FGGATKGVMQRFIASHGKLGNTSPLPAASPMTLSLGAANGNGGLNVNGQI
NNISSSNNNNNNNNNTLKLNTRTAMAFLESGGSTGGINSSSAALSSAAIE
RDSEGRPLRRGYVPVEQKIQRELQDLKSRESELKRLRKINRQNTLKASLD
KLQLSTDDEADADDDDEDSEVEHCYGPGKLRNAQSTQELDRNGNEQDIVH
KPSGNRSLNATAYIANGISNGNGNGMRPAMSLAQLCDLTPEEAPSSRGLI
AQWENLIKKNAEVGTVEAII*

RE14150.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21927-PA 453 GF21927-PA 1..453 1..470 1553 75.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17725-PA 472 GG17725-PA 1..472 1..470 2071 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24126-PA 473 GH24126-PA 1..473 1..470 1208 60 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2556-PA 470 CG2556-PA 1..470 1..470 2371 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25336-PA 344 GL25336-PA 63..256 7..184 571 69.6 Plus
Dper\GL25336-PA 344 GL25336-PA 261..344 396..470 203 58.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22956-PA 468 GA22956-PA 1..468 1..470 1379 66.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11568-PA 452 GM11568-PA 200..442 6..248 1268 97.5 Plus
Dsec\GM11569-PA 194 GM11569-PA 1..194 275..470 979 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17083-PA 471 GD17083-PA 20..471 18..470 2256 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16757-PA 390 GJ16757-PA 1..390 1..470 759 46.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16499-PA 483 GK16499-PA 1..483 1..470 1284 63.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17015-PA 478 GE17015-PA 1..478 1..470 2008 92.7 Plus