Clone RE14171 Report

Search the DGRC for RE14171

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:141
Well:71
Vector:pFlc-1
Associated Gene/TranscriptCG1304-RA
Protein status:RE14171.pep: gold
Preliminary Size:783
Sequenced Size:913

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1304 2002-01-01 Sim4 clustering to Release 2
CG1304 2002-04-09 Blastp of sequenced clone
CG1304 2003-01-01 Sim4 clustering to Release 3
CG1304 2008-04-29 Release 5.5 accounting
CG1304 2008-08-15 Release 5.9 accounting
CG1304 2008-12-18 5.12 accounting

Clone Sequence Records

RE14171.complete Sequence

913 bp (913 high quality bases) assembled on 2002-04-09

GenBank Submission: AY095196

> RE14171.complete
GCCCATTTGGAATATGAGATCCGTTAAGGCAGCGATTTTGCTCGGTAGCT
TTTTGCTGCTGTTGGCAGTGCCCGTACATTCGGCACCTGGTAGCCTCAAC
GGTCGAGTGGTGGGCGGTGAGGATGCCGTGAAAAATCAGTTTCCCCACCA
GGTGTCCCTGAGGAACGCCGGCTCCCACAGCTGTGGAGGTTCGATTCTGT
CCAGGAACTACGTCTTAACCGCTGCCCATTGTGTAACCAATCAGGACTCA
AATGGCAATTCCGTTCCAATTGCTGCGGAGCGTTTCACCATTCGAGCGGG
CTCCAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGGTAA
TTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTGCGA
CTAGAGAGCCCACTGATCCTGTCCGCGAGTATTCAGCCCATCGATCTACC
CACTGCGGATACTCCAGCGGATGTGGACGTCATCATTTCCGGCTGGGGAA
GGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACCCTG
AAGTCCATTTCCTTGGAGAGGTGCGACGAACTGATCGGCTGGGGAGTCCA
GAGCGAGTTGTGCCTCATCCACGAGGCCGATAATGGAGCGTGCAATGGGG
ACTCCGGTGGTCCGGCCGTATATAACAACCAAGTGGTGGGCGTGGCCGGG
TTCGTGTGGTCCGCCTGTGGAACGAGCTATCCAGATGGATATGCCAGGGT
GTACTACCACAACGAATGGATTAAGAATAACTCGGATGTGAAATAATGCT
GGCATAGCTGTATTGAGGGAATTTCATTTAAATAACTGCTCAACGATAAT
AAGAATTGTTTGTGTTGACTATCAATAAAGTTTTCATTTTAAAAAAAAAA
AAAAAAAAAAAAA

RE14171.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1304-RA 896 CG1304-RA 1..893 1..893 4465 100 Plus
Ser6-RA 899 Ser6-RA 267..706 266..705 1525 89.7 Plus
Ser6-RA 899 Ser6-RA 1..248 1..247 705 86.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20829712..20830602 890..1 4375 99.7 Minus
chrX 22417052 chrX 20827935..20828655 750..31 2085 86.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20964524..20965416 893..1 4465 100 Minus
X 23542271 X 20962751..20963470 750..31 2100 86.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20949616..20950508 893..1 4465 100 Minus
X 23527363 X 20947888..20948327 705..266 1525 89.7 Minus
X 23527363 X 20948346..20948593 247..1 705 86.2 Minus
Blast to na_te.dros performed on 2019-03-16 02:22:16 has no hits.

RE14171.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:23:19 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20829712..20830602 1..890 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:56:06 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 1..783 14..796 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:10:25 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 1..783 14..796 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:25 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 1..783 14..796 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:10 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 1..783 14..796 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:21 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 1..783 14..796 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:44:53 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 1..890 1..890 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:10:25 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 1..890 1..890 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:25 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 4..893 1..890 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:10 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 1..890 1..890 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:21 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
CG1304-RA 4..893 1..890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:19 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
X 20964527..20965416 1..890 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:19 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
X 20964527..20965416 1..890 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:23:19 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
X 20964527..20965416 1..890 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:25 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20835554..20836443 1..890 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:34 Download gff for RE14171.complete
Subject Subject Range Query Range Percent Splice Strand
X 20949619..20950508 1..890 100   Minus

RE14171.hyp Sequence

Translation from 0 to 795

> RE14171.hyp
PIWNMRSVKAAILLGSFLLLLAVPVHSAPGSLNGRVVGGEDAVKNQFPHQ
VSLRNAGSHSCGGSILSRNYVLTAAHCVTNQDSNGNSVPIAAERFTIRAG
SNDRFSGGVLVQVAEVIVHEEYGNFLNDVALLRLESPLILSASIQPIDLP
TADTPADVDVIISGWGRIKHQGDLPRYLQYNTLKSISLERCDELIGWGVQ
SELCLIHEADNGACNGDSGGPAVYNNQVVGVAGFVWSACGTSYPDGYARV
YYHNEWIKNNSDVK*

RE14171.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1304-PA 260 CG1304-PA 1..260 5..264 1364 100 Plus
Ser6-PA 259 CG2071-PA 5..259 9..263 1127 82.7 Plus
CG9676-PA 251 CG9676-PA 7..251 16..263 504 45.6 Plus
CG32523-PA 262 CG32523-PA 24..256 23..257 443 43.3 Plus
CG4653-PA 254 CG4653-PA 37..253 48..261 433 40.9 Plus

RE14171.pep Sequence

Translation from 13 to 795

> RE14171.pep
MRSVKAAILLGSFLLLLAVPVHSAPGSLNGRVVGGEDAVKNQFPHQVSLR
NAGSHSCGGSILSRNYVLTAAHCVTNQDSNGNSVPIAAERFTIRAGSNDR
FSGGVLVQVAEVIVHEEYGNFLNDVALLRLESPLILSASIQPIDLPTADT
PADVDVIISGWGRIKHQGDLPRYLQYNTLKSISLERCDELIGWGVQSELC
LIHEADNGACNGDSGGPAVYNNQVVGVAGFVWSACGTSYPDGYARVYYHN
EWIKNNSDVK*

RE14171.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21864-PA 264 GF21864-PA 13..264 13..259 970 71 Plus
Dana\GF21865-PA 229 GF21865-PA 1..226 1..259 718 53.8 Plus
Dana\GF22295-PA 255 GF22295-PA 2..253 7..257 536 47.5 Plus
Dana\GF22292-PA 271 GF22292-PA 31..268 29..257 434 36.2 Plus
Dana\GF22653-PA 252 GF22653-PA 32..251 43..257 400 37.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17565-PA 260 GG17565-PA 1..260 1..260 1161 86.5 Plus
Dere\GG17566-PA 259 GG17566-PA 1..259 1..259 1077 80.3 Plus
Dere\GG18232-PA 251 GG18232-PA 27..251 31..259 502 46.1 Plus
Dere\GG19067-PA 255 GG19067-PA 38..254 44..257 424 41.8 Plus
Dere\GG19714-PA 261 GG19714-PA 35..255 31..253 416 44.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24521-PA 256 GH24521-PA 12..256 14..259 858 64.6 Plus
Dgri\GH12387-PA 238 GH12387-PA 7..228 13..252 505 46.2 Plus
Dgri\GH12388-PA 269 GH12388-PA 35..265 27..259 463 44.1 Plus
Dgri\GH12394-PA 251 GH12394-PA 8..250 13..256 455 38.5 Plus
Dgri\GH12384-PA 235 GH12384-PA 2..231 24..254 376 38 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1304-PA 260 CG1304-PA 1..260 1..260 1364 100 Plus
Ser6-PA 259 CG2071-PA 5..259 5..259 1127 82.7 Plus
CG9676-PA 251 CG9676-PA 7..251 12..259 504 45.6 Plus
CG32523-PA 262 CG32523-PA 24..256 19..253 443 43.3 Plus
CG4653-PA 254 CG4653-PA 37..253 44..257 433 40.9 Plus
CG9673-PB 261 CG9673-PB 6..260 8..257 420 35.2 Plus
CG9673-PA 261 CG9673-PA 6..260 8..257 420 35.2 Plus
alphaTry-PA 256 CG18444-PA 2..254 4..258 374 36.1 Plus
CG30025-PA 253 CG30025-PA 2..253 4..257 369 35.5 Plus
Ser8-PA 260 CG4812-PA 2..253 7..253 368 34.2 Plus
sphe-PA 249 CG9675-PA 24..245 30..254 366 36.8 Plus
gammaTry-PA 253 CG30028-PA 2..253 4..257 364 35.1 Plus
deltaTry-PA 253 CG12351-PA 2..253 4..257 364 35.1 Plus
CG30031-PA 253 CG30031-PA 2..253 4..257 364 35.1 Plus
betaTry-PB 253 CG18211-PB 4..253 13..257 357 34 Plus
betaTry-PA 253 CG18211-PA 4..253 13..257 357 34 Plus
CG9672-PA 253 CG9672-PA 1..248 4..254 348 34.2 Plus
epsilonTry-PA 256 CG18681-PA 2..254 4..258 347 34.2 Plus
CG17234-PA 251 CG17234-PA 1..245 8..255 343 37.7 Plus
CG31265-PA 266 CG31265-PA 7..256 12..255 343 34.9 Plus
CG16749-PA 265 CG16749-PA 7..260 8..256 339 33.7 Plus
CG31269-PB 273 CG31269-PB 1..257 1..255 339 33.3 Plus
Send1-PA 255 CG17012-PA 8..245 8..259 328 37.3 Plus
CG5255-PA 273 CG5255-PA 23..252 25..256 323 30.3 Plus
CG17239-PB 248 CG17239-PB 23..237 31..253 322 33.2 Plus
CG17239-PA 248 CG17239-PA 23..237 31..253 322 33.2 Plus
CG17571-PB 258 CG17571-PB 11..256 14..258 322 34.8 Plus
CG17571-PA 258 CG17571-PA 11..256 14..258 322 34.8 Plus
etaTry-PA 262 CG12386-PA 4..254 8..253 319 32.7 Plus
lambdaTry-PA 272 CG12350-PA 32..256 28..253 318 34.8 Plus
CG12951-PA 265 CG12951-PA 10..260 12..256 317 32.8 Plus
CG12256-PA 283 CG12256-PA 46..279 31..254 315 35 Plus
Send2-PA 239 CG18125-PA 1..230 8..258 311 34.6 Plus
CG17475-PB 288 CG17475-PB 45..269 27..255 310 30.6 Plus
CG17475-PA 288 CG17475-PA 45..269 27..255 310 30.6 Plus
CG4053-PB 265 CG4053-PB 9..254 13..254 309 31.2 Plus
CG34458-PA 257 CG34458-PA 1..257 1..259 306 32.2 Plus
iotaTry-PA 252 CG7754-PA 26..245 30..253 305 33.5 Plus
CG17477-PA 267 CG17477-PA 27..248 32..254 305 29.7 Plus
CG10477-PB 272 CG10477-PB 8..270 4..259 305 34.2 Plus
CG10477-PA 272 CG10477-PA 8..270 4..259 305 34.2 Plus
CG3355-PA 314 CG3355-PA 75..306 31..257 304 34.6 Plus
CG13430-PB 267 CG13430-PB 1..259 1..253 298 29.6 Plus
CG13430-PA 267 CG13430-PA 1..259 1..253 298 29.6 Plus
CG4271-PA 242 CG4271-PA 15..236 27..258 295 33.8 Plus
Jon65Aiii-PA 274 CG6483-PA 18..272 14..259 293 32.6 Plus
CG10472-PA 290 CG10472-PA 44..285 29..259 293 32.1 Plus
thetaTry-PA 262 CG12385-PA 28..260 25..258 291 31 Plus
CG31954-PA 277 CG31954-PA 47..277 28..259 290 32 Plus
CG10405-PB 268 CG10405-PB 12..263 8..254 284 32.6 Plus
yip7-PA 270 CG6457-PA 18..270 14..259 282 33.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15500-PA 257 GI15500-PA 26..257 29..260 779 65.1 Plus
Dmoj\GI15881-PA 254 GI15881-PA 3..254 5..259 759 57.3 Plus
Dmoj\GI14724-PA 252 GI14724-PA 23..251 27..256 497 42.5 Plus
Dmoj\GI15882-PA 268 GI15882-PA 42..268 31..259 453 48.1 Plus
Dmoj\GI15879-PA 258 GI15879-PA 3..258 1..258 412 36.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26774-PA 255 GL26774-PA 31..255 31..259 539 50.4 Plus
Dper\GL26772-PA 261 GL26772-PA 20..260 24..257 449 37 Plus
Dper\GL26771-PA 253 GL26771-PA 22..251 29..256 371 36.1 Plus
Dper\GL17143-PA 256 GL17143-PA 27..249 28..253 333 35.8 Plus
Dper\GL17338-PA 256 GL17338-PA 27..254 28..258 332 34.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11993-PA 220 GA11993-PA 1..220 8..259 778 59.9 Plus
Dpse\GA21958-PA 255 GA21958-PA 31..255 31..259 533 50 Plus
Dpse\GA18331-PA 249 GA18331-PA 31..248 44..257 447 43.9 Plus
Dpse\GA21955-PA 261 GA21955-PA 20..260 24..257 447 36.6 Plus
Dpse\GA21954-PA 253 GA21954-PA 3..251 8..256 376 35.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22649-PA 260 GM22649-PA 1..260 1..260 1221 95.4 Plus
Dsec\GM22650-PA 259 GM22650-PA 5..259 5..259 1137 85.5 Plus
Dsec\GM13375-PA 251 GM13375-PA 27..251 31..259 508 48.3 Plus
Dsec\GM13457-PA 254 GM13457-PA 37..253 44..257 431 41.8 Plus
Dsec\GM13373-PA 261 GM13373-PA 21..260 24..257 378 33.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15518-PA 260 GD15518-PA 1..260 1..260 1221 95 Plus
Dsim\GD15519-PA 259 GD15519-PA 5..259 5..259 1108 83.5 Plus
Dsim\GD15730-PA 251 GD15730-PA 27..251 31..259 513 48.3 Plus
Dsim\GD17298-PA 254 GD17298-PA 37..253 44..257 430 41.4 Plus
Dsim\GD17523-PA 262 GD17523-PA 32..260 27..257 399 42.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18895-PA 256 GJ18895-PA 5..256 9..260 907 66.3 Plus
Dvir\GJ19257-PA 272 GJ19257-PA 43..271 31..259 810 68.1 Plus
Dvir\GJ18708-PA 253 GJ18708-PA 15..253 21..259 745 59 Plus
Dvir\GJ18709-PA 265 GJ18709-PA 30..260 27..259 470 45.6 Plus
Dvir\GJ19438-PA 252 GJ19438-PA 1..251 1..256 460 40.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20044-PA 258 GK20044-PA 28..258 29..259 842 71 Plus
Dwil\GK25506-PA 256 GK25506-PA 25..256 28..259 748 59.5 Plus
Dwil\GK25410-PA 246 GK25410-PA 18..245 31..257 402 39.4 Plus
Dwil\GK25503-PA 252 GK25503-PA 3..248 9..254 393 36.3 Plus
Dwil\GK25505-PA 254 GK25505-PA 4..248 10..253 373 33.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15325-PA 260 GE15325-PA 1..260 1..260 1263 92.7 Plus
Dyak\GE15326-PA 259 GE15326-PA 5..259 5..259 1129 81.2 Plus
Dyak\GE15651-PA 253 GE15651-PA 29..247 31..253 492 47.3 Plus
Dyak\GE17612-PA 255 GE17612-PA 38..254 44..257 426 40.5 Plus
Dyak\GE15649-PA 265 GE15649-PA 6..264 8..257 408 34.1 Plus