Clone RE14181 Report

Search the DGRC for RE14181

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:141
Well:81
Vector:pFlc-1
Associated Gene/TranscriptNelf-E-RA
Protein status:RE14181.pep: gold
Preliminary Size:1547
Sequenced Size:1237

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5994 2001-12-14 Blastp of sequenced clone
CG5994 2002-01-01 Sim4 clustering to Release 2
CG5994 2003-01-01 Sim4 clustering to Release 3
Nelf-E 2008-04-29 Release 5.5 accounting
Nelf-E 2008-08-15 Release 5.9 accounting
Nelf-E 2008-12-18 5.12 accounting

Clone Sequence Records

RE14181.complete Sequence

1237 bp (1237 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071061

> RE14181.complete
ATCAACTGTTACAGTCACACTAAGCCAATTCGATAGATTTCGATAGTAAA
AATAAACATTTTGGAATAACATAATTACTTTTGTAGAAGTTACTTTTTAC
GGGGTTAATTTCAAGCAGACATTTTCCCAACATGGTTTACATACACTTCC
CCAACAATTTAACCGAAGAGGAGCAAATGCTGCAGGCCAAGTATCAGAAA
CTCAAGAAAAAGAAAAAGGCACTGCAAGCGCACAAGGCGCCCAAGCCGGA
GCCGGAGAGCTCCTTGACCTTGAAGCGTCCCACGGATGCGCGAGATGCCC
GTGAAGTGGCCAGGAAACTAATCAAAAGCGGCGCCATTCCCGCCATCCAG
AAGCAGACCAAGCAAGATCAAACCTCCTTCAAGCGGCCCAAAGGACAGGA
AAGAGCCAAGCGCTCCACCTCGGAAACCACTGTTGCCTCCTACCAGCCCT
TTTCGTCTACGCAGAACGACGTGGCCCAGGAGACGATCATTAGTGAGATC
ATTAAGGAGGAGCCGCGTCGACAGAATCTCTACCAACACTTCGCCACCGA
GCGGGATCGAGAGGAGCGCGGCATGCCCGAGAAGGTGCCCATGGACACAG
CGCAGCCAGAGAAGCCACGGGCCGGCAATACCATCTTCGTGTCCGGCAAC
AAGGTCACCGAGGATTTCTTAAAAAAGACATTCAACGACTACGGCACCAT
TGTCAATGTCTCCATGGAGATCGAAAAGAGTCGCGGCTTTGTTTCCTTCG
CCAAACCCGAGTCGGCAGATCGCGCCATTGCGGAGATTCATGGCAAGAAT
GTGAATGGCATCAACTTGCAGGTGCAGTTGGCTAGACGCCAGCCCCAGAT
TGAGCCCATTAACGATGCCTCCTCGTCGGCAGTCTGGTCATCTATTGCCG
CCAGCAAATCACAAAAGGGTAGCCACAAGGACCACCGCGAGATGGTTCAA
TACGATGAAGACTTCTTGCTCTAGAGCGCAATAATTAGTTTCTACGTTTA
GCTTTCTACTTACTTTATCCCTTAGTAACAGAACACATTTCAGTTTATTT
TAAATAATTTTGCTTTATTGAAATACGCTTCTATATATATGTTCACTTTC
TGGCTAAGTACTCGCATTTCAAGTTATAACGTTCAAATGAATTCAATGAA
AAAGATTGTATGTTTTGTATATTAATTCCTACGTTTTGATCTAAATTAAA
CAACAATATGTTTAACAATAGAAAAAAAAAAAAAAAA

RE14181.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-RA 1257 Nelf-E-RA 8..1231 1..1223 6065 99.8 Plus
CG32355-RA 2981 CG32355-RA 2801..2981 1223..1044 850 98.8 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8592113..8592632 730..211 2450 98.1 Minus
chr3L 24539361 chr3L 8591470..8591793 1219..897 1570 99.7 Minus
chr3L 24539361 chr3L 8592688..8592896 212..1 965 98.1 Minus
chr3L 24539361 chr3L 8591857..8592025 897..729 815 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8600087..8600606 730..211 2600 100 Minus
3L 28110227 3L 8599440..8599767 1223..897 1575 99.4 Minus
3L 28110227 3L 8600663..8600874 212..1 1060 100 Minus
3L 28110227 3L 8599831..8599999 897..729 845 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8593187..8593706 730..211 2600 100 Minus
3L 28103327 3L 8592540..8592867 1223..897 1585 99.3 Minus
3L 28103327 3L 8593763..8593974 212..1 1060 100 Minus
3L 28103327 3L 8592931..8593099 897..729 845 100 Minus
Blast to na_te.dros performed 2019-03-16 03:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Vege 884 Dwil\Vege VEGE 884bp Derived from AF518730. 53..101 85..36 112 72 Minus

RE14181.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:10:39 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8591468..8591792 898..1221 99 <- Minus
chr3L 8591857..8592023 731..897 98 <- Minus
chr3L 8592113..8592630 213..730 98 <- Minus
chr3L 8592688..8592896 1..212 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:56:08 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 1..843 132..974 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:09:42 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 1..843 132..974 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:42:44 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 1..843 132..974 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:52 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 1..843 132..974 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:32:31 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 1..843 132..974 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:18 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 1..1222 1..1221 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:09:41 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 1..1222 1..1221 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:42:44 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 6..1227 1..1221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:52 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 1..1222 1..1221 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:32:31 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
Nelf-E-RA 6..1227 1..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:39 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8599442..8599766 898..1221 99 <- Minus
3L 8599831..8599997 731..897 100 <- Minus
3L 8600087..8600604 213..730 100 <- Minus
3L 8600663..8600874 1..212 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:39 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8599442..8599766 898..1221 99 <- Minus
3L 8599831..8599997 731..897 100 <- Minus
3L 8600087..8600604 213..730 100 <- Minus
3L 8600663..8600874 1..212 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:39 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8599442..8599766 898..1221 99 <- Minus
3L 8599831..8599997 731..897 100 <- Minus
3L 8600087..8600604 213..730 100 <- Minus
3L 8600663..8600874 1..212 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:42:44 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8592542..8592866 898..1221 99 <- Minus
arm_3L 8592931..8593097 731..897 100 <- Minus
arm_3L 8593187..8593704 213..730 100 <- Minus
arm_3L 8593763..8593974 1..212 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:01 Download gff for RE14181.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8592542..8592866 898..1221 99 <- Minus
3L 8592931..8593097 731..897 100 <- Minus
3L 8593187..8593704 213..730 100 <- Minus
3L 8593763..8593974 1..212 100   Minus

RE14181.pep Sequence

Translation from 131 to 973

> RE14181.pep
MVYIHFPNNLTEEEQMLQAKYQKLKKKKKALQAHKAPKPEPESSLTLKRP
TDARDAREVARKLIKSGAIPAIQKQTKQDQTSFKRPKGQERAKRSTSETT
VASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDREERGMPE
KVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEKS
RGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASSSA
VWSSIAASKSQKGSHKDHREMVQYDEDFLL*

RE14181.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10157-PA 281 GF10157-PA 1..281 1..280 1430 96.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15071-PA 280 GG15071-PA 1..280 1..280 1477 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16149-PA 281 GH16149-PA 1..281 1..280 1214 90.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-PA 280 CG5994-PA 1..280 1..280 1422 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12420-PA 281 GI12420-PA 1..280 1..279 1229 92.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10297-PA 282 GL10297-PA 1..282 1..280 1223 92.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19284-PA 282 GA19284-PA 1..282 1..280 1223 92.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24927-PA 280 GM24927-PA 1..280 1..280 1484 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12975-PA 418 GD12975-PA 255..418 117..280 886 100 Plus
Dsim\GD12975-PA 418 GD12975-PA 1..88 1..88 431 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Nelf-E-PA 281 GJ12312-PA 1..281 1..280 1215 90.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20547-PA 279 GK20547-PA 1..279 1..280 1216 91.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21294-PA 280 GE21294-PA 1..280 1..280 1479 99.3 Plus

RE14181.hyp Sequence

Translation from 131 to 973

> RE14181.hyp
MVYIHFPNNLTEEEQMLQAKYQKLKKKKKALQAHKAPKPEPESSLTLKRP
TDARDAREVARKLIKSGAIPAIQKQTKQDQTSFKRPKGQERAKRSTSETT
VASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDREERGMPE
KVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEKS
RGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASSSA
VWSSIAASKSQKGSHKDHREMVQYDEDFLL*

RE14181.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Nelf-E-PA 280 CG5994-PA 1..280 1..280 1422 100 Plus