Clone RE14222 Report

Search the DGRC for RE14222

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:142
Well:22
Vector:pFlc-1
Associated Gene/TranscriptCG11318-RA
Protein status:RE14222.pep: gold
Preliminary Size:2325
Sequenced Size:2777

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11318 2001-12-14 Blastp of sequenced clone
CG11318 2002-01-01 Sim4 clustering to Release 2
CG11318 2003-01-01 Sim4 clustering to Release 3
CG11318 2008-04-29 Release 5.5 accounting
CG11318 2008-08-15 Release 5.9 accounting
CG11318 2008-12-18 5.12 accounting

Clone Sequence Records

RE14222.complete Sequence

2777 bp (2777 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071063

> RE14222.complete
AGTGTGCCGCGATATTTCAAGAACGTCGGACGTGAAAAGTACTATCTGCC
AAAGAATTTGTAAACATTTTCGGAGAGCTGCAAACAGCTGTGGCACCTGA
TTCATCGCCATGAATTTCAACTGGTGTGCTGGGCTCTTTGTGGTCTTGGC
CTTGGTTTCGCCGATTTATTCCGCCTGCCCAAAGGAAAATCAAATGTGCT
TGAGAAACGGAACGTTTCAGTACTGTGATGGAGAGGAACGTAATTCATCG
GACGAACTTATGCAAACACATCTGGTTTACTGTACGTCCATGTTCTGCGA
GCCGGAGGAGTTTCAGCACGACTACATAACGCGTAACCACGATCAAACAC
CTCACCAGAACAAGTGGAAACGGGCTAGAATCGGCGAACGTGCCACCCTG
CACGATGTTTGCCTTCTGCGAAACGGAATGCCGGTCACCAGGGAGTGCAG
AGTGAAGGACAACCGAGCCAACTGGGAGTCCACCGAACACTGGGATCCCG
TGGTGTGTTTGAGGCGATTCAGGGAGCACACGATCAGCGGTGACTTGAAT
AGCCTGCATGACGACGTTCTCGAGGGCAGGAGGCGCACCAATGACACCCA
GGGGCGTCGTGAGATGACTGGCATAATGAGGAACATGTTCCGACAGAGAG
GTGGGAATCTTCTACCCGCCGATGTTCACATGACCGGACAAATGTTCGGC
GCCCTGATGCAGCAGGACAAGGATGCCACGGTCAGTGTGGACTTGGTCAG
TGTCTGCAAGGAGATAATGTCCTGCGACAGTAAGGTTCTTAGATTATCAG
CTCAGCTCAACGCTACCAATTCCCTGCTCAGCCAGTTCGAAAGCTACATG
GATGCTCTTCCGGAGCAACTGGTTCCCAAGGACAGATGCGGCAAGGTGGT
GGCCAAGCCGACCAGTGATGAAGCAGAAACGGCCACTACTGGAGTGGAAA
CGTACAACTTCTCAGATATCGGTGTCCAAGCTCTGATTACCGGCAATATC
AGCGTGTTCTTCGCCAACCCCGAATGCGATCGCATAACTGGATTAGCTAT
ATTCTCTGCGCCAGGGGATCAACGAAAGACTTCCGCCAGTGGCTTCTGGT
ACCGCTTCATTCGATTCTCCGAAGACTTGGCTAAGGTCAAGGAGGAATCT
AATCTGGAGACAGCTGCATTTTTGCCGGAGAATCTCTGGCGGCAAGTGAA
AAGCAGGGGAGCAACCTATCTCATCTTTAAAGTCTATGCCCACGATGCTC
TGTTCGTGGAAACCTCATTGCAACGCACTCGTAAGCCGCGCAGCAAAGTA
ATCTCCATTTCAATACCAGGACTGAGAAGCAATTATCTCTCTCTGCCACT
GCCCTTTCTTCTGCGTAATGAAAATCTTCGCAATCCGGATTCAAAGGCCT
TTAGCATTGGGAGTGGATGCGGATATTGGAACTATGAAACCTGGTCAACT
GAGGGAGTAAGCACTGAAAGCAGTTCGGACCTCTTGAAGGATGCCATCAT
CGAGTGCCACACTAACCACCTCACACAGTTTGCATTCCTGGTGGGTGGAA
GCTATCGAGCCAACGACCTTGGCGAGGAGATTCTAATTACTCCGATTAAT
GAGAAAGTGCTGGACATTATCTCGATAGTGGGCTGCAGTCTTTCCCTTTT
GGGTATACTGGGAATATTCCTCACTGCCGCACTCTTCAAAAGCTGGCGCA
GTCAGGCCTCCACGAAGGTCTTACTGCACCTTTGCCTGGCTATGTGTCTC
CAGATGATGCTCTTCGTGTTTCTCAATACAGATGATGTATCCGAAGCGCT
TGTTGTGAATGGAAACACAGTTCGCTGTGTGGCTCTGGGCGCTGCCATGC
AGTACTCCATTCTGGTTCTCTTCAGTTGGATGCTAATCATCGCCTTCCTG
CAGTTCCAGCGTTACGTCACAGTTATCGGAATCGAGAGACCACCTCGCTA
TATCCTGAAGGCCGCCATTGTGGCCTGGCTACTGCCCTTGGTCCCCACCC
TGCTGGTGGCCCTTATAGATCCCGATTCGTACGTCCCCTCGGCTGCCCAA
CTTTCCACGGACACTGGCATCTGCTATCCATCGGGCTATGGTCTCATTTT
TGGGGTGGTGCTCCCTGTGACCTTGATTACTGTGTGCAACTTGGTGATAT
TCGTGTATGTTTTCTACAGCATCTCGCACTCTTTGAGCCAGAGCATCCAT
AAAAACGAAAAGAAAATGGTGGTTAAGCAGATCCGACTCTCCATAATGCT
CTTCTTTTTGCTGGGTCTTACCTGGATCTTTGGAATATTCGCCTTCATGC
AGGCAGGTGTGGCTTTTTCATACCTCTTCTGCATCACGGCCACTATGCAG
GGATTTGTGATGTTCATTTACTTTGTCCTCTTGGACTCCACGAACCGTCG
GCTGTGGGTGGGTCTGATTTGCCCCACCAAGATGGAGCTGGATGTCCAAA
AGCGCACCACTGAGCTCCAGTCGATGACCACCTCATCCACCAACTACAAC
AGCAGATCACATCAGTAGATATACTAAAATACGTATTCCCCGACGAACAA
AGGTCCAGGACCAATGTATTAATAACGTTATATTTTATGCTAATTGATTG
CCATTATGTATAGGTCCCTAAATTAAAATTTAAAAATTCTAATATAAAAT
AAGACAATACTTCCCAGCGAGTCGATTTAATTAATACTAAATTTTTTATT
TTCGCATGTAAGTCTCTGTCAGAAGCCAACTATTTAAAAATATATATCCC
TTTTTGCCTCCAAAAAAAAAAAAAAAA

RE14222.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11318-RA 2829 CG11318-RA 65..2827 1..2763 13800 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26928768..26930198 2759..1329 7080 99.7 Minus
chr3R 27901430 chr3R 26930264..26931592 1329..1 6405 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31106360..31107794 2763..1329 7160 99.9 Minus
3R 32079331 3R 31107860..31109188 1329..1 6645 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30847191..30848625 2763..1329 7160 99.9 Minus
3R 31820162 3R 30848691..30850019 1329..1 6645 100 Minus
Blast to na_te.dros performed 2019-03-15 19:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 3053..3117 2619..2683 118 64.6 Plus

RE14222.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:34:48 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26928766..26930198 1329..2761 95 <- Minus
chr3R 26930265..26931592 1..1328 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:56:10 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG11318-RA 1..2409 110..2518 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:32 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG11318-RA 1..2409 110..2518 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:54:07 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG11318-RA 1..2409 110..2518 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:47 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG11318-RA 1..2409 110..2518 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:40 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG11318-RA 1..2409 110..2518 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:37:33 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG11318-RA 1..2757 1..2757 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:31 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG11318-RA 1..2757 1..2757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:54:07 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG11318-RA 4..2764 1..2761 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:47 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG11318-RA 1..2757 1..2757 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:40 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
CG11318-RA 4..2764 1..2761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:34:48 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31106362..31107794 1329..2761 99 <- Minus
3R 31107861..31109188 1..1328 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:34:48 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31106362..31107794 1329..2761 99 <- Minus
3R 31107861..31109188 1..1328 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:34:48 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31106362..31107794 1329..2761 99 <- Minus
3R 31107861..31109188 1..1328 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:54:07 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26932084..26933516 1329..2761 99 <- Minus
arm_3R 26933583..26934910 1..1328 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:45 Download gff for RE14222.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30847193..30848625 1329..2761 99 <- Minus
3R 30848692..30850019 1..1328 100   Minus

RE14222.pep Sequence

Translation from 109 to 2517

> RE14222.pep
MNFNWCAGLFVVLALVSPIYSACPKENQMCLRNGTFQYCDGEERNSSDEL
MQTHLVYCTSMFCEPEEFQHDYITRNHDQTPHQNKWKRARIGERATLHDV
CLLRNGMPVTRECRVKDNRANWESTEHWDPVVCLRRFREHTISGDLNSLH
DDVLEGRRRTNDTQGRREMTGIMRNMFRQRGGNLLPADVHMTGQMFGALM
QQDKDATVSVDLVSVCKEIMSCDSKVLRLSAQLNATNSLLSQFESYMDAL
PEQLVPKDRCGKVVAKPTSDEAETATTGVETYNFSDIGVQALITGNISVF
FANPECDRITGLAIFSAPGDQRKTSASGFWYRFIRFSEDLAKVKEESNLE
TAAFLPENLWRQVKSRGATYLIFKVYAHDALFVETSLQRTRKPRSKVISI
SIPGLRSNYLSLPLPFLLRNENLRNPDSKAFSIGSGCGYWNYETWSTEGV
STESSSDLLKDAIIECHTNHLTQFAFLVGGSYRANDLGEEILITPINEKV
LDIISIVGCSLSLLGILGIFLTAALFKSWRSQASTKVLLHLCLAMCLQMM
LFVFLNTDDVSEALVVNGNTVRCVALGAAMQYSILVLFSWMLIIAFLQFQ
RYVTVIGIERPPRYILKAAIVAWLLPLVPTLLVALIDPDSYVPSAAQLST
DTGICYPSGYGLIFGVVLPVTLITVCNLVIFVYVFYSISHSLSQSIHKNE
KKMVVKQIRLSIMLFFLLGLTWIFGIFAFMQAGVAFSYLFCITATMQGFV
MFIYFVLLDSTNRRLWVGLICPTKMELDVQKRTTELQSMTTSSTNYNSRS
HQ*

RE14222.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16599-PA 783 GF16599-PA 3..780 22..800 3319 78.6 Plus
Dana\GF16598-PA 785 GF16598-PA 67..748 44..771 1294 38.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11888-PA 802 GG11888-PA 1..802 1..802 3951 92.4 Plus
Dere\GG11886-PA 755 GG11886-PA 7..754 5..798 1284 37.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13973-PA 818 GH13973-PA 40..816 23..800 2917 67.9 Plus
Dgri\GH14343-PA 763 GH14343-PA 49..756 62..795 1760 48.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11318-PA 802 CG11318-PA 1..802 1..802 4179 100 Plus
CG15556-PC 755 CG15556-PC 7..754 5..798 1346 37.4 Plus
CG15556-PB 755 CG15556-PB 7..754 5..798 1346 37.4 Plus
CG15556-PA 755 CG15556-PA 7..754 5..798 1346 37.4 Plus
CG43968-PA 1026 CG43968-PA 587..1017 86..517 301 24.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22317-PA 812 GI22317-PA 32..808 20..797 2865 67.9 Plus
Dmoj\GI10438-PA 774 GI10438-PA 64..748 63..779 1617 47.8 Plus
Dmoj\GI23624-PA 1400 GI23624-PA 571..1165 55..641 832 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13538-PA 834 GL13538-PA 1..833 1..801 3078 69.8 Plus
Dper\GL13957-PA 734 GL13957-PA 69..711 58..779 1077 40.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10913-PB 802 GA10913-PB 1..801 1..801 3105 72.2 Plus
Dpse\GA26904-PA 769 GA26904-PA 69..746 58..779 1233 43.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12107-PA 802 GM12107-PA 1..802 1..802 4088 95.6 Plus
Dsec\GM12105-PA 602 GM12105-PA 1..601 169..798 1165 41.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16611-PA 802 GD16611-PA 1..802 1..802 4099 96 Plus
Dsim\GD16589-PA 456 GD16589-PA 2..455 334..798 985 46.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10504-PA 813 GJ10504-PA 35..813 23..802 2934 68.1 Plus
Dvir\GJ10655-PA 536 GJ10655-PA 1..517 247..781 1376 51.7 Plus
Dvir\GJ16571-PA 727 GJ16571-PA 23..720 63..780 1193 37.5 Plus
Dvir\GJ10654-PA 178 GJ10654-PA 8..173 62..234 222 34.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22612-PA 820 GK22612-PA 42..817 23..799 2976 69.6 Plus
Dwil\GK22557-PA 481 GK22557-PA 1..478 195..681 1310 50.5 Plus
Dwil\GK14363-PA 1085 GK14363-PA 376..1057 83..766 1114 36.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23337-PA 802 GE23337-PA 1..802 1..802 3962 93.5 Plus
Dyak\GE23335-PA 755 GE23335-PA 7..754 5..798 1320 38.7 Plus

RE14222.hyp Sequence

Translation from 109 to 2517

> RE14222.hyp
MNFNWCAGLFVVLALVSPIYSACPKENQMCLRNGTFQYCDGEERNSSDEL
MQTHLVYCTSMFCEPEEFQHDYITRNHDQTPHQNKWKRARIGERATLHDV
CLLRNGMPVTRECRVKDNRANWESTEHWDPVVCLRRFREHTISGDLNSLH
DDVLEGRRRTNDTQGRREMTGIMRNMFRQRGGNLLPADVHMTGQMFGALM
QQDKDATVSVDLVSVCKEIMSCDSKVLRLSAQLNATNSLLSQFESYMDAL
PEQLVPKDRCGKVVAKPTSDEAETATTGVETYNFSDIGVQALITGNISVF
FANPECDRITGLAIFSAPGDQRKTSASGFWYRFIRFSEDLAKVKEESNLE
TAAFLPENLWRQVKSRGATYLIFKVYAHDALFVETSLQRTRKPRSKVISI
SIPGLRSNYLSLPLPFLLRNENLRNPDSKAFSIGSGCGYWNYETWSTEGV
STESSSDLLKDAIIECHTNHLTQFAFLVGGSYRANDLGEEILITPINEKV
LDIISIVGCSLSLLGILGIFLTAALFKSWRSQASTKVLLHLCLAMCLQMM
LFVFLNTDDVSEALVVNGNTVRCVALGAAMQYSILVLFSWMLIIAFLQFQ
RYVTVIGIERPPRYILKAAIVAWLLPLVPTLLVALIDPDSYVPSAAQLST
DTGICYPSGYGLIFGVVLPVTLITVCNLVIFVYVFYSISHSLSQSIHKNE
KKMVVKQIRLSIMLFFLLGLTWIFGIFAFMQAGVAFSYLFCITATMQGFV
MFIYFVLLDSTNRRLWVGLICPTKMELDVQKRTTELQSMTTSSTNYNSRS
HQ*

RE14222.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11318-PA 802 CG11318-PA 1..802 1..802 4179 100 Plus
CG15556-PC 755 CG15556-PC 7..754 5..798 1346 37.4 Plus
CG15556-PB 755 CG15556-PB 7..754 5..798 1346 37.4 Plus
CG15556-PA 755 CG15556-PA 7..754 5..798 1346 37.4 Plus
CG43968-PA 1026 CG43968-PA 587..1017 86..517 301 24.9 Plus