Clone RE14241 Report

Search the DGRC for RE14241

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:142
Well:41
Vector:pFlc-1
Associated Gene/TranscriptCG9588-RA
Protein status:RE14241.pep: gold
Preliminary Size:1146
Sequenced Size:1238

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9588 2001-12-14 Blastp of sequenced clone
CG9588 2002-01-01 Sim4 clustering to Release 2
CG9588 2003-01-01 Sim4 clustering to Release 3
CG9588 2008-04-29 Release 5.5 accounting
CG9588 2008-08-15 Release 5.9 accounting
CG9588 2008-12-18 5.12 accounting

Clone Sequence Records

RE14241.complete Sequence

1238 bp (1238 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071064

> RE14241.complete
GTTACACTGGTCGCGGGCAACCAGGGCTGCACGAGCACTGGTTGTTGTTG
CTACTGTCGCTGCTGAAAAAAAAAAAACATTAACGAAAAATAATGAATTT
GTATTTTTCGGGACGAACGCTGGAATAACTCGAATCGAAGTGGAAGTCAT
GGCCGCTGGGACGACGACCAAGGAGCGCCTGGAGCGTCTGATTAACGCTA
AAAAGCAGCTGGAGGCGCAGATCAACAGAAACGGACAGATCCTGGCCGCC
AACGACAATGTGGGCATGAGTGGACCACTGGTGGACGCCGAGGGTTTTCC
GCGCAACGACATCGACGTTTACCAGGTGCGCCTGGCGCGACAGACGATCA
TCTGCCTGCAGAACGACCACAAGGAGCTGATGAACCAGATCCAGACGCTG
CTCAACCAATATCACAGCGAGATTGCCACCACAGATCCGGAGCTGGTGAA
CCGCGCCTCCGCTTTGGACCTGGACAGCGACCGTTCACCCGGTGGCGCTA
ATATCACGGATCTTGCTCCTGCACGCGCCATCGTGGTGGTCAATCTGGTC
AGTCCCGATTCGCCCGCCGAAAGAGCTGGTCTCTGTGCCGGCGATGCCAT
CCTCCGCTTTGGCTCCATCAATAGCGGCAACTTCAAGGGAGATCTCGCCC
AGATTGGCGAGCTGGTGCGCAACATGCAGAGCCAGAATGTCCAGCTGAAA
GTGAAGCGCGGCGAGCAGCAGTTGGACCTCATCCTGGTGCCGAAAACGTG
GAGTGGACGCGGTCTCCTGGGCTGCAACATCGTCCTGCCGCCCGAGGCGA
TGGATCACTGATGTAGCTTTGTGTTTAAGCTTTTTTCGAGTTGCCTGTGC
ACTCCTGCCCTGCACTTTAGTTATCAGCCCATCTCTGCCAGGCCGACGAA
CATGGTTGCTCCAAATTGTGAAAATTGATTTTTGGACGCGATTTCAGGGC
AATTTCAGCTGGAGTCATCTCGCTGACTGACAGCCGGGTCAGTGGGCCAA
GGAGCAGCAGTGGAGTGACCCAAGGTGCACAGGTGACAGGCAAAAGGATG
ATATTGTGATTCGGTGGATTCTGTCGACATGACCGATTTTTTTTGCATTT
AATTTTCATTCAATATGAAATGATGCGTAACAAAATGATGAGGCGGTTTT
ACTAACAAATAAGTTTTTATAGCGCTTTTACTGGTAAATAAAGAAGGATA
TATAATTAAAAATATAAAAAACAAAAAAAAAAAAAAAA

RE14241.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-RA 1222 CG9588-RA 5..1222 4..1222 6040 99.8 Plus
CG9588.a 1192 CG9588.a 548..1192 578..1222 3225 100 Plus
CG9588.a 1192 CG9588.a 5..548 4..548 2670 99.6 Plus
lkb1.a 2630 lkb1.a 1..69 187..119 345 100 Minus
lkb1.a 2630 lkb1.a 70..125 59..4 280 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9499994..9500638 1222..578 3225 100 Minus
chr3R 27901430 chr3R 9500702..9501029 578..251 1640 100 Minus
chr3R 27901430 chr3R 9501330..9501575 250..4 1170 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13675089..13675736 1225..578 3240 100 Minus
3R 32079331 3R 13675800..13676127 578..251 1640 100 Minus
3R 32079331 3R 13676428..13676673 250..4 1170 99.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13415920..13416567 1225..578 3240 100 Minus
3R 31820162 3R 13416631..13416958 578..251 1640 100 Minus
3R 31820162 3R 13417259..13417504 250..4 1180 99.1 Minus
Blast to na_te.dros performed on 2019-03-15 14:04:41 has no hits.

RE14241.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:05:41 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9500020..9500638 578..1196 100 <- Minus
chr3R 9500703..9501029 251..577 100 <- Minus
chr3R 9501330..9501578 1..250 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:56:11 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 1..663 149..811 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:36 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 1..663 149..811 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:17:15 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 1..663 149..811 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:51 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 1..663 149..811 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:49:21 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 1..663 149..811 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:37:37 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 2..1222 1..1222 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:35 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 1..1221 1..1222 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:17:15 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 6..1226 1..1222 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:52 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 2..1222 1..1222 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:49:21 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9588-RA 6..1226 1..1222 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:41 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13675092..13675736 578..1222 100 <- Minus
3R 13675801..13676127 251..577 100 <- Minus
3R 13676428..13676676 1..250 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:41 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13675092..13675736 578..1222 100 <- Minus
3R 13675801..13676127 251..577 100 <- Minus
3R 13676428..13676676 1..250 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:41 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13675092..13675736 578..1222 100 <- Minus
3R 13675801..13676127 251..577 100 <- Minus
3R 13676428..13676676 1..250 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:17:15 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9500814..9501458 578..1222 100 <- Minus
arm_3R 9501523..9501849 251..577 100 <- Minus
arm_3R 9502150..9502398 1..250 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:49 Download gff for RE14241.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13415923..13416567 578..1222 100 <- Minus
3R 13416632..13416958 251..577 100 <- Minus
3R 13417259..13417507 1..250 98   Minus

RE14241.hyp Sequence

Translation from 148 to 810

> RE14241.hyp
MAAGTTTKERLERLINAKKQLEAQINRNGQILAANDNVGMSGPLVDAEGF
PRNDIDVYQVRLARQTIICLQNDHKELMNQIQTLLNQYHSEIATTDPELV
NRASALDLDSDRSPGGANITDLAPARAIVVVNLVSPDSPAERAGLCAGDA
ILRFGSINSGNFKGDLAQIGELVRNMQSQNVQLKVKRGEQQLDLILVPKT
WSGRGLLGCNIVLPPEAMDH*

RE14241.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-PA 220 CG9588-PA 1..220 1..220 1116 100 Plus

RE14241.pep Sequence

Translation from 148 to 810

> RE14241.pep
MAAGTTTKERLERLINAKKQLEAQINRNGQILAANDNVGMSGPLVDAEGF
PRNDIDVYQVRLARQTIICLQNDHKELMNQIQTLLNQYHSEIATTDPELV
NRASALDLDSDRSPGGANITDLAPARAIVVVNLVSPDSPAERAGLCAGDA
ILRFGSINSGNFKGDLAQIGELVRNMQSQNVQLKVKRGEQQLDLILVPKT
WSGRGLLGCNIVLPPEAMDH*

RE14241.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17366-PA 220 GF17366-PA 1..219 1..219 993 86.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17031-PA 220 GG17031-PA 1..220 1..220 1108 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19055-PA 219 GH19055-PA 1..219 1..220 883 76.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9588-PA 220 CG9588-PA 1..220 1..220 1116 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10690-PA 220 GI10690-PA 1..220 1..220 835 73.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23970-PA 219 GL23970-PA 1..219 1..220 915 79.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21895-PA 219 GA21895-PA 1..219 1..220 916 79.7 Plus
Dpse\GA25637-PA 57 GA25637-PA 2..53 159..218 153 66.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25915-PA 220 GM25915-PA 1..220 1..220 1111 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20482-PA 220 GD20482-PA 1..220 1..220 1130 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23109-PA 219 GJ23109-PA 1..219 1..220 887 78.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13330-PA 219 GK13330-PA 1..219 1..220 911 78.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24424-PA 220 GE24424-PA 1..220 1..220 1119 96.4 Plus