BDGP Sequence Production Resources |
Search the DGRC for RE14241
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 142 |
Well: | 41 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9588-RA |
Protein status: | RE14241.pep: gold |
Preliminary Size: | 1146 |
Sequenced Size: | 1238 |
Gene | Date | Evidence |
---|---|---|
CG9588 | 2001-12-14 | Blastp of sequenced clone |
CG9588 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9588 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9588 | 2008-04-29 | Release 5.5 accounting |
CG9588 | 2008-08-15 | Release 5.9 accounting |
CG9588 | 2008-12-18 | 5.12 accounting |
1238 bp (1238 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071064
> RE14241.complete GTTACACTGGTCGCGGGCAACCAGGGCTGCACGAGCACTGGTTGTTGTTG CTACTGTCGCTGCTGAAAAAAAAAAAACATTAACGAAAAATAATGAATTT GTATTTTTCGGGACGAACGCTGGAATAACTCGAATCGAAGTGGAAGTCAT GGCCGCTGGGACGACGACCAAGGAGCGCCTGGAGCGTCTGATTAACGCTA AAAAGCAGCTGGAGGCGCAGATCAACAGAAACGGACAGATCCTGGCCGCC AACGACAATGTGGGCATGAGTGGACCACTGGTGGACGCCGAGGGTTTTCC GCGCAACGACATCGACGTTTACCAGGTGCGCCTGGCGCGACAGACGATCA TCTGCCTGCAGAACGACCACAAGGAGCTGATGAACCAGATCCAGACGCTG CTCAACCAATATCACAGCGAGATTGCCACCACAGATCCGGAGCTGGTGAA CCGCGCCTCCGCTTTGGACCTGGACAGCGACCGTTCACCCGGTGGCGCTA ATATCACGGATCTTGCTCCTGCACGCGCCATCGTGGTGGTCAATCTGGTC AGTCCCGATTCGCCCGCCGAAAGAGCTGGTCTCTGTGCCGGCGATGCCAT CCTCCGCTTTGGCTCCATCAATAGCGGCAACTTCAAGGGAGATCTCGCCC AGATTGGCGAGCTGGTGCGCAACATGCAGAGCCAGAATGTCCAGCTGAAA GTGAAGCGCGGCGAGCAGCAGTTGGACCTCATCCTGGTGCCGAAAACGTG GAGTGGACGCGGTCTCCTGGGCTGCAACATCGTCCTGCCGCCCGAGGCGA TGGATCACTGATGTAGCTTTGTGTTTAAGCTTTTTTCGAGTTGCCTGTGC ACTCCTGCCCTGCACTTTAGTTATCAGCCCATCTCTGCCAGGCCGACGAA CATGGTTGCTCCAAATTGTGAAAATTGATTTTTGGACGCGATTTCAGGGC AATTTCAGCTGGAGTCATCTCGCTGACTGACAGCCGGGTCAGTGGGCCAA GGAGCAGCAGTGGAGTGACCCAAGGTGCACAGGTGACAGGCAAAAGGATG ATATTGTGATTCGGTGGATTCTGTCGACATGACCGATTTTTTTTGCATTT AATTTTCATTCAATATGAAATGATGCGTAACAAAATGATGAGGCGGTTTT ACTAACAAATAAGTTTTTATAGCGCTTTTACTGGTAAATAAAGAAGGATA TATAATTAAAAATATAAAAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9588-RA | 1222 | CG9588-RA | 5..1222 | 4..1222 | 6040 | 99.8 | Plus |
CG9588.a | 1192 | CG9588.a | 548..1192 | 578..1222 | 3225 | 100 | Plus |
CG9588.a | 1192 | CG9588.a | 5..548 | 4..548 | 2670 | 99.6 | Plus |
lkb1.a | 2630 | lkb1.a | 1..69 | 187..119 | 345 | 100 | Minus |
lkb1.a | 2630 | lkb1.a | 70..125 | 59..4 | 280 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 9499994..9500638 | 1222..578 | 3225 | 100 | Minus |
chr3R | 27901430 | chr3R | 9500702..9501029 | 578..251 | 1640 | 100 | Minus |
chr3R | 27901430 | chr3R | 9501330..9501575 | 250..4 | 1170 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 13675089..13675736 | 1225..578 | 3240 | 100 | Minus |
3R | 32079331 | 3R | 13675800..13676127 | 578..251 | 1640 | 100 | Minus |
3R | 32079331 | 3R | 13676428..13676673 | 250..4 | 1170 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 13415920..13416567 | 1225..578 | 3240 | 100 | Minus |
3R | 31820162 | 3R | 13416631..13416958 | 578..251 | 1640 | 100 | Minus |
3R | 31820162 | 3R | 13417259..13417504 | 250..4 | 1180 | 99.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 9500020..9500638 | 578..1196 | 100 | <- | Minus |
chr3R | 9500703..9501029 | 251..577 | 100 | <- | Minus |
chr3R | 9501330..9501578 | 1..250 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9588-RA | 1..663 | 149..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9588-RA | 1..663 | 149..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9588-RA | 1..663 | 149..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9588-RA | 1..663 | 149..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9588-RA | 1..663 | 149..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9588-RA | 2..1222 | 1..1222 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9588-RA | 1..1221 | 1..1222 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9588-RA | 6..1226 | 1..1222 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9588-RA | 2..1222 | 1..1222 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9588-RA | 6..1226 | 1..1222 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13675092..13675736 | 578..1222 | 100 | <- | Minus |
3R | 13675801..13676127 | 251..577 | 100 | <- | Minus |
3R | 13676428..13676676 | 1..250 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13675092..13675736 | 578..1222 | 100 | <- | Minus |
3R | 13675801..13676127 | 251..577 | 100 | <- | Minus |
3R | 13676428..13676676 | 1..250 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13675092..13675736 | 578..1222 | 100 | <- | Minus |
3R | 13675801..13676127 | 251..577 | 100 | <- | Minus |
3R | 13676428..13676676 | 1..250 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 9500814..9501458 | 578..1222 | 100 | <- | Minus |
arm_3R | 9501523..9501849 | 251..577 | 100 | <- | Minus |
arm_3R | 9502150..9502398 | 1..250 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13415923..13416567 | 578..1222 | 100 | <- | Minus |
3R | 13416632..13416958 | 251..577 | 100 | <- | Minus |
3R | 13417259..13417507 | 1..250 | 98 | Minus |
Translation from 148 to 810
> RE14241.hyp MAAGTTTKERLERLINAKKQLEAQINRNGQILAANDNVGMSGPLVDAEGF PRNDIDVYQVRLARQTIICLQNDHKELMNQIQTLLNQYHSEIATTDPELV NRASALDLDSDRSPGGANITDLAPARAIVVVNLVSPDSPAERAGLCAGDA ILRFGSINSGNFKGDLAQIGELVRNMQSQNVQLKVKRGEQQLDLILVPKT WSGRGLLGCNIVLPPEAMDH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9588-PA | 220 | CG9588-PA | 1..220 | 1..220 | 1116 | 100 | Plus |
Translation from 148 to 810
> RE14241.pep MAAGTTTKERLERLINAKKQLEAQINRNGQILAANDNVGMSGPLVDAEGF PRNDIDVYQVRLARQTIICLQNDHKELMNQIQTLLNQYHSEIATTDPELV NRASALDLDSDRSPGGANITDLAPARAIVVVNLVSPDSPAERAGLCAGDA ILRFGSINSGNFKGDLAQIGELVRNMQSQNVQLKVKRGEQQLDLILVPKT WSGRGLLGCNIVLPPEAMDH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17366-PA | 220 | GF17366-PA | 1..219 | 1..219 | 993 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17031-PA | 220 | GG17031-PA | 1..220 | 1..220 | 1108 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19055-PA | 219 | GH19055-PA | 1..219 | 1..220 | 883 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9588-PA | 220 | CG9588-PA | 1..220 | 1..220 | 1116 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10690-PA | 220 | GI10690-PA | 1..220 | 1..220 | 835 | 73.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23970-PA | 219 | GL23970-PA | 1..219 | 1..220 | 915 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21895-PA | 219 | GA21895-PA | 1..219 | 1..220 | 916 | 79.7 | Plus |
Dpse\GA25637-PA | 57 | GA25637-PA | 2..53 | 159..218 | 153 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25915-PA | 220 | GM25915-PA | 1..220 | 1..220 | 1111 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20482-PA | 220 | GD20482-PA | 1..220 | 1..220 | 1130 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23109-PA | 219 | GJ23109-PA | 1..219 | 1..220 | 887 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13330-PA | 219 | GK13330-PA | 1..219 | 1..220 | 911 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24424-PA | 220 | GE24424-PA | 1..220 | 1..220 | 1119 | 96.4 | Plus |