Clone RE14391 Report

Search the DGRC for RE14391

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:143
Well:91
Vector:pFlc-1
Associated Gene/TranscriptSec63-RA
Protein status:RE14391.pep: gold
Preliminary Size:2262
Sequenced Size:2957

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8583 2002-01-01 Sim4 clustering to Release 2
CG8583 2002-07-13 Blastp of sequenced clone
CG8583 2003-01-01 Sim4 clustering to Release 3
sec63 2008-04-29 Release 5.5 accounting
sec63 2008-08-15 Release 5.9 accounting
sec63 2008-12-18 5.12 accounting

Clone Sequence Records

RE14391.complete Sequence

2957 bp (2957 high quality bases) assembled on 2002-07-13

GenBank Submission: BT001562

> RE14391.complete
CTGTCGGTTCCAGCACGAGCCAAACAACCCTACGTGTCAGTCTCATGCGT
CGGTGTAAATACAGAGTTTTTTAAGTTCGCGGCGTGCCAATCTCGCGATA
TCTTGCAGCAGCAGCAGCAACAACACCAGCTCCTGCCCCATTCGAATCTC
GCAGATCGCCGCGTGTCGATCGAGAATCCACGGGGCGCAGCGATTGTAGC
GATAACTCCAACGCGACAGCAACATCAGCTGGATCTGCCGGAGGAAAAGT
GCAGGGGAAAGCGGCGGCAGAGAAAGGAACGGAACGGAACGGAGCCAAAA
GGCAGTGCCAGACAAAATACAAAATACATATAGTCGCTGTCGGAGATGGC
GGGTCAAAAGTTTCAGTATGATGAGAGCGGCGGAACGTTCTACTACTTTG
TGTTATCGTTCTTGGCGCTAATATTGATACCGACCACCATTTACTATTGG
CCACGTAAAAAGAAACAAGATAACAGCAAACTTAAAGAGGAATGTCAGTG
CGCCGACTGCCAGAAAAAGAAGACCATCTTGGCCAATGCCGAGCCGTACA
GAGCTCTCACGTCATGGACCATCAAGCTGACCATAGTGCTGGGGTGGGCC
CTACTGCTCTTCCTCACGTACCGCGTCTCGCAGTTCGACTACGAGATGGC
CAGCTTCGATCCCTTCGAGATCCTGAATGTGCCGCCGACGTCGTCGCAGG
CCGAGATCAAGAAGGCCTACTACCGGCTGTCCAAGGTGCTCCATCCCGAC
AAGGAGACGGGTGACGAGAAGTCCTTCATGATGCTGAGCAAAGCGTACCA
GGCGCTGACCGACGATGTGGCAAAGGAGAACTACGAGAAGTATGGTAATC
CGGATGGACCGGGTGCCATGTCCTTTGGCATCGCCCTGCCCTCGTGGATT
GTGGAGAAGGAGAATAGCGTTTGGGTTTTGGGTCTGTACGGCCTGGTCTT
CATGGTGGCCATGCCCTCGGCAGTGGGTGTTTGGTGGTACCGCTCCATCC
GCTTCAGTGGCGACAAAGTGCTGCTCGATACCACTCAGATGTACTTTTAC
TTCATCCACAAGACACCGCACATGCTGCTCAAGCGGGCACTTATGGTTCT
GGCAGCCAGTTTGGAGTTTGACAAGCGACACAACTCGCAGGTCCAGGAGC
GGCAGTCGGACAATGACGAGGTGCCGGCGCTGATTAGACAGCTGCCCAAT
CTGAATGAGAAGTGCAAGGAGCATCCGCTGTGCCGCATGTACTCCATCAA
GGCTCGCGCCATCCTGCATGCCCATCTCAGTCGCATGCCCCTCAATCCGG
AAACTCTGGAGCGCGATCGCCAGTTTGTGGTGAAGAAGTGCCCGTATTTG
GTGCAAGAAATGGTCTCCTGCGTTCACCAGCTGGTCATGATGGCCTATGC
CCGACGTGTGCCCCGCCTGCCCAGCATCGAAACGATTGAGAACTGCATGA
AAATGTCGCCGATGATTATCCAAGGCCTGTGGGAGTTCAAATCGCCACTG
CTGCAGCTGCCCCATCTCACCGAGGACCATCTGTACTTTATGAACAAGAA
GAGGCACGTCAAGAACCTGCAGCAATTCGCCCAGCTCAAGCCGGAGGAGA
GCCGTCAGCTTCTGAAGAACCTATCTGACTTTGAGTACGAGAACACGATG
AAAGTGCTGGGCAAGATGCCGCTGATTGACTTCTCCATTCGCTGCGAGGT
TATCGACGATGAGAACACCAATGTGGTGACCGCCGGGGCCATAGTTACGG
TCACGGTTACGCTGGAGCGCAAGGACATGAAGACGCTATTCGGTGACACA
AAGGCGCCTGAGAAGCAGGGCATCAAGGATGAGACCAATGAGGAGGCTGC
CGGTGATGAGGATGAGGCTGCTGCCGCTGCGCCGGTCAAGAAGGCTTCTG
CCTGGGCCAAGCCACGTAAGGGTGGCAAGGGAAAGGGTGGTAAGAAACCA
GCCCAGAACCAAAAGAACCAGAAGAAGGTGCCGGCCAAGGCTGCGACAAC
AGCTACGATCACGGCATCCGAGGATCAAGCGGCGGCGGGTAACTCCGATG
CCGAATCGGAGGCTGGAAATGCGGATGGCAGCGATGTGGAATCGGCTGCC
GGCAGTGGCAGCGAGGATGAGGAGAAGGGCAAGAACAACTCCTCGCTGGA
CGACGACGATGACGAGGAGTGGGAGCGACTGCAAGCTAAGCTTAACAAGA
GGGAGCGTCTCGAGGGCAAGTCTCGGCTGTCGCACACCGTCCACTGCCCC
TACTTCCCCGAGGAGAAGCAGGAGTACTGGTGGACCTACATATGCGATCG
CAAGTCGCGCACCCTGCTCACAGCGCCCTATCATGTGACCAATCTGGTCG
AGAAGGAGGAGATCCAGCTGAAGTTTACCGCGCCGCGCTGGCCGGGCGTC
TACACGTTCACCGTTTGCCTGAGATCGGACTCGTATTTGGGTATGGATCA
GCAGCAGGAGCTGAAGTTGGATGTACAGAAGGCTCCCGCACCACCGACGG
ATCATCCTCAGTGGGATCTGAGCGAATCGGAACCGGAGCACACCGATCAG
CAGGAGAACCTGAGCGACTATACAACAGATACGTCCGATGAGGAGGACGG
CGAATAAATCCACTGTCTACATGGACAGTGCGACGGACGGACGGACGGAT
GGATAGACGTCCTGAACCCCAATCAACCTCAACCTCCTCTCTAATTCACT
GGGACGGAAGAGAAGCCTCTTTGTTTTCCTTTTAGTAAATGAGTTTCGCG
TGGCGCGTGGCGGAGGCACACCAATGCGAACCCTTCCTTCGCATTTTTAC
TAGTTTTGTAATGGAAAAGACCCCGAACTAGTGCGTAAATAACTATAACT
TCATTTTACCGTGTACTGTACTAAACATAATTATAATGTACTGTATATTT
AATTATTTGGATACAAGAACTAAAAGTGAGACACGTAAATACAAAAAAAA
AAAAAAA

RE14391.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
sec63-RA 3310 sec63-RA 135..3077 4..2946 14715 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7354640..7355889 1179..2428 6250 100 Plus
chr3L 24539361 chr3L 7353861..7354576 468..1183 3520 99.4 Plus
chr3L 24539361 chr3L 7355971..7356485 2428..2942 2560 99.8 Plus
chr3L 24539361 chr3L 7352678..7353154 4..473 2215 98.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7362521..7363770 1179..2428 6250 100 Plus
3L 28110227 3L 7361742..7362457 468..1183 3565 99.9 Plus
3L 28110227 3L 7363852..7364370 2428..2946 2595 100 Plus
3L 28110227 3L 7360566..7361035 4..473 2335 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7355621..7356870 1179..2428 6250 100 Plus
3L 28103327 3L 7354842..7355557 468..1183 3565 99.8 Plus
3L 28103327 3L 7356952..7357470 2428..2946 2595 100 Plus
3L 28103327 3L 7353666..7354135 4..473 2335 99.7 Plus
Blast to na_te.dros performed 2019-03-16 03:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\ISBu2 726 Dbuz\ISBu2 ISBU2 726bp 130..186 2679..2622 134 72.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6948 106..275 126 55.7 Plus
Dfun\Isfun-1 928 Dfun\Isfun-1 DFU309320 928bp Derived from AJ309320 (Rel. 68, Last updated, Version 1). 137..186 2658..2606 122 75.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2632..2673 107..148 120 76.2 Plus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 1265..1306 2624..2665 120 76.2 Plus
Dpse\mini-me 4622 Dpse\mini-me DPSEMINIME 4622bp 148..189 2660..2619 120 76.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2383 105..140 117 80.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7958..7982 106..130 116 96 Plus
TART-C 11124 TART-C TARTC 11124bp 9402..9426 106..130 116 96 Plus

RE14391.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:10:42 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7352675..7353150 1..469 98 -> Plus
chr3L 7353863..7354572 470..1179 99 -> Plus
chr3L 7354641..7355889 1180..2428 100 -> Plus
chr3L 7355972..7356485 2429..2942 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:56:18 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
sec63-RA 1..2262 346..2607 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:17:01 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
sec63-RA 1..2262 346..2607 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:42:45 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
sec63-RA 1..2262 346..2607 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:08:13 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
sec63-RA 1..2262 346..2607 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:32:38 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
Sec63-RA 1..2262 346..2607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:41:12 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
sec63-RA 1..2942 1..2942 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:17:00 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
sec63-RA 1..2942 1..2942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:42:45 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
sec63-RA 3..2944 1..2942 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:08:14 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
sec63-RA 1..2942 1..2942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:32:38 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
Sec63-RA 3..2944 1..2942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:42 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7360563..7361031 1..469 99 -> Plus
3L 7361744..7362453 470..1179 100 -> Plus
3L 7362522..7363770 1180..2428 100 -> Plus
3L 7363853..7364366 2429..2942 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:42 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7360563..7361031 1..469 99 -> Plus
3L 7361744..7362453 470..1179 100 -> Plus
3L 7362522..7363770 1180..2428 100 -> Plus
3L 7363853..7364366 2429..2942 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:42 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7360563..7361031 1..469 99 -> Plus
3L 7361744..7362453 470..1179 100 -> Plus
3L 7362522..7363770 1180..2428 100 -> Plus
3L 7363853..7364366 2429..2942 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:42:45 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7353663..7354131 1..469 99 -> Plus
arm_3L 7354844..7355553 470..1179 100 -> Plus
arm_3L 7355622..7356870 1180..2428 100 -> Plus
arm_3L 7356953..7357466 2429..2942 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:40:07 Download gff for RE14391.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7353663..7354131 1..469 99 -> Plus
3L 7354844..7355553 470..1179 100 -> Plus
3L 7355622..7356870 1180..2428 100 -> Plus
3L 7356953..7357466 2429..2942 100   Plus

RE14391.pep Sequence

Translation from 345 to 2606

> RE14391.pep
MAGQKFQYDESGGTFYYFVLSFLALILIPTTIYYWPRKKKQDNSKLKEEC
QCADCQKKKTILANAEPYRALTSWTIKLTIVLGWALLLFLTYRVSQFDYE
MASFDPFEILNVPPTSSQAEIKKAYYRLSKVLHPDKETGDEKSFMMLSKA
YQALTDDVAKENYEKYGNPDGPGAMSFGIALPSWIVEKENSVWVLGLYGL
VFMVAMPSAVGVWWYRSIRFSGDKVLLDTTQMYFYFIHKTPHMLLKRALM
VLAASLEFDKRHNSQVQERQSDNDEVPALIRQLPNLNEKCKEHPLCRMYS
IKARAILHAHLSRMPLNPETLERDRQFVVKKCPYLVQEMVSCVHQLVMMA
YARRVPRLPSIETIENCMKMSPMIIQGLWEFKSPLLQLPHLTEDHLYFMN
KKRHVKNLQQFAQLKPEESRQLLKNLSDFEYENTMKVLGKMPLIDFSIRC
EVIDDENTNVVTAGAIVTVTVTLERKDMKTLFGDTKAPEKQGIKDETNEE
AAGDEDEAAAAAPVKKASAWAKPRKGGKGKGGKKPAQNQKNQKKVPAKAA
TTATITASEDQAAAGNSDAESEAGNADGSDVESAAGSGSEDEEKGKNNSS
LDDDDDEEWERLQAKLNKRERLEGKSRLSHTVHCPYFPEEKQEYWWTYIC
DRKSRTLLTAPYHVTNLVEKEEIQLKFTAPRWPGVYTFTVCLRSDSYLGM
DQQQELKLDVQKAPAPPTDHPQWDLSESEPEHTDQQENLSDYTTDTSDEE
DGE*

RE14391.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10637-PA 759 GF10637-PA 1..759 1..753 3605 92.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14419-PA 753 GG14419-PA 1..753 1..753 4056 99.1 Plus
Dere\GG13510-PA 2142 GG13510-PA 1893..2058 301..488 158 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14875-PA 758 GH14875-PA 1..758 1..753 3440 88.3 Plus
Dgri\GH16760-PA 2142 GH16760-PA 1860..2058 269..488 163 29 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
Sec63-PA 753 CG8583-PA 1..753 1..753 3972 100 Plus
l(3)72Ab-PA 2142 CG5931-PA 1845..2052 249..480 168 27 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12848-PA 761 GI12848-PA 1..761 1..753 3486 88.3 Plus
Dmoj\GI13421-PA 2142 GI13421-PA 1893..2058 301..488 163 30.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26342-PA 727 GL26342-PA 1..727 1..753 3236 84.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21179-PA 752 GA21179-PA 1..752 1..753 3540 91.4 Plus
Dpse\GA23706-PA 196 GA23706-PA 1..164 1..176 285 35.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14835-PA 653 GM14835-PA 1..653 101..753 3504 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14009-PA 753 GD14009-PA 1..753 1..753 4057 99.2 Plus
Dsim\GD12528-PA 325 GD12528-PA 14..241 234..488 160 26.6 Plus
Dsim\GD12528-PA 325 GD12528-PA 220..313 614..710 151 34 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12993-PA 764 GJ12993-PA 1..764 1..753 3557 90.3 Plus
Dvir\GJ11781-PA 2142 GJ11781-PA 1893..2058 301..488 160 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13558-PA 757 GK13558-PA 1..757 1..753 3589 91.8 Plus
Dwil\GK23638-PA 1808 GK23638-PA 1486..1724 233..488 161 25.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21609-PA 753 GE21609-PA 1..753 1..753 4041 98.8 Plus
Dyak\GE23129-PA 1733 GE23129-PA 1484..1649 301..488 160 29.8 Plus

RE14391.hyp Sequence

Translation from 345 to 2606

> RE14391.hyp
MAGQKFQYDESGGTFYYFVLSFLALILIPTTIYYWPRKKKQDNSKLKEEC
QCADCQKKKTILANAEPYRALTSWTIKLTIVLGWALLLFLTYRVSQFDYE
MASFDPFEILNVPPTSSQAEIKKAYYRLSKVLHPDKETGDEKSFMMLSKA
YQALTDDVAKENYEKYGNPDGPGAMSFGIALPSWIVEKENSVWVLGLYGL
VFMVAMPSAVGVWWYRSIRFSGDKVLLDTTQMYFYFIHKTPHMLLKRALM
VLAASLEFDKRHNSQVQERQSDNDEVPALIRQLPNLNEKCKEHPLCRMYS
IKARAILHAHLSRMPLNPETLERDRQFVVKKCPYLVQEMVSCVHQLVMMA
YARRVPRLPSIETIENCMKMSPMIIQGLWEFKSPLLQLPHLTEDHLYFMN
KKRHVKNLQQFAQLKPEESRQLLKNLSDFEYENTMKVLGKMPLIDFSIRC
EVIDDENTNVVTAGAIVTVTVTLERKDMKTLFGDTKAPEKQGIKDETNEE
AAGDEDEAAAAAPVKKASAWAKPRKGGKGKGGKKPAQNQKNQKKVPAKAA
TTATITASEDQAAAGNSDAESEAGNADGSDVESAAGSGSEDEEKGKNNSS
LDDDDDEEWERLQAKLNKRERLEGKSRLSHTVHCPYFPEEKQEYWWTYIC
DRKSRTLLTAPYHVTNLVEKEEIQLKFTAPRWPGVYTFTVCLRSDSYLGM
DQQQELKLDVQKAPAPPTDHPQWDLSESEPEHTDQQENLSDYTTDTSDEE
DGE*

RE14391.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sec63-PA 753 CG8583-PA 1..753 1..753 3972 100 Plus
l(3)72Ab-PA 2142 CG5931-PA 1845..2052 249..480 168 27 Plus