BDGP Sequence Production Resources |
Search the DGRC for RE14402
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 144 |
Well: | 2 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3224-RA |
Protein status: | RE14402.pep: gold |
Preliminary Size: | 489 |
Sequenced Size: | 853 |
Gene | Date | Evidence |
---|---|---|
CG3224 | 2001-12-14 | Blastp of sequenced clone |
CG3224 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3224 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3224 | 2008-04-29 | Release 5.5 accounting |
CG3224 | 2008-08-15 | Release 5.9 accounting |
CG3224 | 2008-12-18 | 5.12 accounting |
853 bp (853 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071068
> RE14402.complete AGGAAACCAATCGGCCGGGGACCGTCGCCAACATTCTATGTGCGCATTAA ATTAACTTGTTACCTTTAAAACCCTCGTTTCTTAACCAAAAAAAGGTTTT AGGAAACACCTAGCAGCAGCAGCAGAATCTAAAACCCCATTGGCAACCAA AACACGTGCCAAAACAAACGATTAAATTTTCCGTAAAAGTTGTAAATATA AAAAAAAGTCAGCAAGATGGGAATGGTATCGAAACGCAAGAAGATGCACT ATGGCGATACCCATCTGCAGAGGAGATGGCGTGTGCGGAATCGACGTCGT GATCTCGACCAGATCGACGACGATCTGCAGACCCGGAGCGGTGAACTGAT CAATCAGAATGTGGATCTCGACAAGCCGGGATTCGCGCAGTTCTACTGCG TGCACTGTGCCAAGTACTTCATCGATGACACCGCCATGCAGGCACATTTC CGCACCAAGGTGCACAAGAGGCGTCTCAAGGCCCTAGAGATCGAGCCGTA CAGCATCGAGGAGGCGGAACGCGCCGCGGGACGTGGCAGCTTCGTGAAGC CCAAGAAGCGGGCGATGGAAACGCAGCCATCGAAGGAGGACGTGGTCGCT GGCAAGAGGATCCGAGTGGAAGTGGTGCCCGAGGATACAGATGCCACCGA TTCGCCATCGACGTCCAAAACGAAGCGCAAGAAAGTCGAGAAAATGGAGA CATAGGCGAGGAGGATGAACCAATCTATTGATCTAGCTTAGTTTTTAAGG CCCTCGGGGACAGGACTTTCTTCACCCCCCTCCCACAGAACTCTGTTTAC CTCCAATTGCTTTCTTTAAATACATTTTTTTTCCAACAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3224-RA | 898 | CG3224-RA | 50..885 | 3..838 | 4180 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2401 | 105..166 | 118 | 67.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 6552792..6553532 | 96..837 | 98 | <- | Minus |
chrX | 6553593..6553686 | 1..95 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3224-RA | 1..489 | 217..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3224-RA | 1..489 | 217..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3224-RA | 1..489 | 217..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3224-RA | 1..489 | 217..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3224-RA | 1..489 | 217..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3224-RA | 2..835 | 3..836 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3224-RA | 2..835 | 3..836 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3224-RA | 15..851 | 1..837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3224-RA | 2..835 | 3..836 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3224-RA | 15..851 | 1..837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6660552..6661293 | 96..837 | 100 | <- | Minus |
X | 6661354..6661447 | 1..95 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6660552..6661293 | 96..837 | 100 | <- | Minus |
X | 6661354..6661447 | 1..95 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6660552..6661293 | 96..837 | 100 | <- | Minus |
X | 6661354..6661447 | 1..95 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 6555387..6555480 | 1..95 | 98 | Minus | |
arm_X | 6554585..6555326 | 96..837 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6668650..6669391 | 96..837 | 100 | <- | Minus |
X | 6669452..6669545 | 1..95 | 98 | Minus |
Translation from 216 to 704
> RE14402.pep MGMVSKRKKMHYGDTHLQRRWRVRNRRRDLDQIDDDLQTRSGELINQNVD LDKPGFAQFYCVHCAKYFIDDTAMQAHFRTKVHKRRLKALEIEPYSIEEA ERAAGRGSFVKPKKRAMETQPSKEDVVAGKRIRVEVVPEDTDATDSPSTS KTKRKKVEKMET*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21899-PA | 161 | GF21899-PA | 1..161 | 1..162 | 634 | 83.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17667-PA | 162 | GG17667-PA | 1..162 | 1..162 | 765 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24240-PA | 158 | GH24240-PA | 1..158 | 1..162 | 603 | 76.5 | Plus |
Dgri\GH22289-PA | 114 | GH22289-PA | 1..51 | 1..51 | 151 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3224-PA | 162 | CG3224-PA | 1..162 | 1..162 | 844 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21436-PA | 165 | GI21436-PA | 1..152 | 1..150 | 620 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13372-PA | 164 | GL13372-PA | 1..164 | 1..162 | 645 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16779-PA | 164 | GA16779-PA | 1..164 | 1..162 | 639 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12567-PA | 162 | GM12567-PA | 1..162 | 1..162 | 853 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16185-PA | 162 | GD16185-PA | 1..162 | 1..162 | 850 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16454-PA | 165 | GJ16454-PA | 1..165 | 1..162 | 630 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25345-PA | 175 | GK25345-PA | 1..175 | 1..162 | 643 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16457-PA | 166 | GE16457-PA | 1..162 | 1..162 | 769 | 96.3 | Plus |
Translation from 216 to 704
> RE14402.hyp MGMVSKRKKMHYGDTHLQRRWRVRNRRRDLDQIDDDLQTRSGELINQNVD LDKPGFAQFYCVHCAKYFIDDTAMQAHFRTKVHKRRLKALEIEPYSIEEA ERAAGRGSFVKPKKRAMETQPSKEDVVAGKRIRVEVVPEDTDATDSPSTS KTKRKKVEKMET*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3224-PA | 162 | CG3224-PA | 1..162 | 1..162 | 844 | 100 | Plus |