Clone RE14405 Report

Search the DGRC for RE14405

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:144
Well:5
Vector:pFlc-1
Associated Gene/TranscriptCG17124-RA
Protein status:RE14405.pep: gold
Sequenced Size:1258

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17124 2002-01-01 Sim4 clustering to Release 2
CG17124 2002-04-04 Blastp of sequenced clone
CG17124 2003-01-01 Sim4 clustering to Release 3
CG17124 2008-04-29 Release 5.5 accounting
CG17124 2008-08-15 Release 5.9 accounting
CG17124 2008-12-18 5.12 accounting

Clone Sequence Records

RE14405.complete Sequence

1258 bp (1258 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095067

> RE14405.complete
AGTCTTTCATTGGTGCTCACCGGCTGCGCGTGCTAAGCTCCGAGTTGCTA
GGTCCAGAACCATACTTTTTAGATACTGTATCCAAACTCCGGGCAATCCG
CTGCCGCTTTATAAACAAACAGTTAAACAAACCGACCGCTCGAACGTCGC
CGTGTGTGTGTGTGCCTGTGTGCTTTTCGCCCTCATTGTGCTCTCGTGCA
AATGAAAATTTCATTGAGCAGAAAGTCGCAGCAGCAGAAGCAGCAGCAGC
AGCAGTAGAAAAGTGGAAAATCCTAAAGCGGCGCCAGCCTCAGCAAAAAA
AGAAAATAAATTAAAAATCTCGGCTAGTGAAATTTCAGTCCAGAACTAGA
CGCCGCAATTAAGCCAAATACAGACCGAACCACGACGAGTCAATCGCTGG
AAAACTGCCAAAACAGCCACGCCAATCGATTGCAGGCGTTCCGCAAATTG
AAGTTCAACCGGCGCAGCTTGTACCGCTAAATCGATCGACAAAGATGCAG
TGCGGTCTGGAGCAGATGAACGACTGTGAGCGGTCGCCGAACCGGACGAA
CCTCCGGGTCAACTTCAACGAGAAGGGGGCGGAGGTGAAGGAGCGGCGGG
AGAAGTTCCTCACGGCCAAGTACGGTTCACACCAGATGAGCCTCATCCGC
AAGCGGCTGGCCGTGGAGATGTGGCTCTACGACGAGCTACAGAAGCTCTT
CGATCCACCAAACGAGGCCATCGATGTGGACATCGACGAGATACTGGACA
TGGACACAGATGACATAAGAAGATCTCATCTTATAAGATTACTGTCCGTC
TGCAAACGCCCGCAATCAGACATATCGAAGTTCATTGGCGATCTGCTGGA
TCGCGCAAAAACCCTGTAAATCGCCGATGCCTCATTTGAAAAATCATCCA
GCAGACCTACACATACATACATATATACTATGCAGATAAAGAAAAAGAAT
TAACAAAACCTAGATGATTAAGTTTAGCTTGGAACGCAAAGAACAAAGAA
TTCTTGAGATCTACCTATTCGAACACTGTGTTGATTTTCTCTATGTACTT
TAGTTGTTAGTTTGTATCTTTGCGCTGATTAATTTGAAGTCTAACCTAAT
TTAAGCTACCCAAGAAAATGATAAACATGATGAAGATCGTTAGCCGTAAG
CTTATGGTGTAATGCCGCCGAAAACATAATACTTCATCAATTTTGTGATG
ATATTTTTTTAATAAAACACAAACATGATATGATATGCCCAGAAAAAAAA
AAAAAAAA

RE14405.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17124-RB 2632 CG17124-RB 347..1593 1..1247 6220 99.9 Plus
CG17124.b 2632 CG17124.b 347..1593 1..1247 6220 99.9 Plus
CG17124.a 2384 CG17124.a 99..1345 1..1247 6220 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10743881..10744335 1240..786 2275 100 Minus
chr2L 23010047 chr2L 10754671..10755083 413..1 2065 100 Minus
chr2L 23010047 chr2L 10744546..10744842 710..414 1485 100 Minus
chr2L 23010047 chr2L 10744399..10744486 785..698 395 96.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10745110..10745571 1247..786 2295 99.8 Minus
2L 23513712 2L 10755904..10756316 413..1 2065 100 Minus
2L 23513712 2L 10745782..10746078 710..414 1485 100 Minus
2L 23513712 2L 10745635..10745722 785..698 395 96.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10745110..10745571 1247..786 2295 99.7 Minus
2L 23513712 2L 10755904..10756316 413..1 2065 100 Minus
2L 23513712 2L 10745782..10746078 710..414 1485 100 Minus
2L 23513712 2L 10745635..10745722 785..698 395 96.5 Minus
Blast to na_te.dros performed on 2019-03-16 18:51:16 has no hits.

RE14405.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:51:57 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10743879..10744335 786..1242 99 <- Minus
chr2L 10744399..10744473 711..785 100 <- Minus
chr2L 10744546..10744842 414..710 100 <- Minus
chr2L 10754671..10755083 1..413 92   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:15:11 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RB 1..375 495..869 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:15:25 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RB 1..375 495..869 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:56 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RA 1..375 495..869 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:18 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RB 1..375 495..869 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:41 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RA 1..375 495..869 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:15:11 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RB 1..1242 1..1242 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:15:25 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RB 1..1242 1..1242 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:56 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RA 10..1251 1..1242 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:18 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RB 1..1242 1..1242 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:41 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
CG17124-RA 10..1251 1..1242 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:51:57 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10745115..10745571 786..1242 99 <- Minus
2L 10745635..10745709 711..785 100 <- Minus
2L 10745782..10746078 414..710 100 <- Minus
2L 10755904..10756316 1..413 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:51:57 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10745115..10745571 786..1242 99 <- Minus
2L 10745635..10745709 711..785 100 <- Minus
2L 10745782..10746078 414..710 100 <- Minus
2L 10755904..10756316 1..413 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:51:57 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10745115..10745571 786..1242 99 <- Minus
2L 10745635..10745709 711..785 100 <- Minus
2L 10745782..10746078 414..710 100 <- Minus
2L 10755904..10756316 1..413 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:56 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10745115..10745571 786..1242 99 <- Minus
arm_2L 10745635..10745709 711..785 100 <- Minus
arm_2L 10745782..10746078 414..710 100 <- Minus
arm_2L 10755904..10756316 1..413 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:46 Download gff for RE14405.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10745115..10745571 786..1242 99 <- Minus
2L 10745635..10745709 711..785 100 <- Minus
2L 10745782..10746078 414..710 100 <- Minus
2L 10755904..10756316 1..413 100   Minus

RE14405.pep Sequence

Translation from 494 to 868

> RE14405.pep
MQCGLEQMNDCERSPNRTNLRVNFNEKGAEVKERREKFLTAKYGSHQMSL
IRKRLAVEMWLYDELQKLFDPPNEAIDVDIDEILDMDTDDIRRSHLIRLL
SVCKRPQSDISKFIGDLLDRAKTL*

RE14405.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14069-PA 124 GF14069-PA 1..124 1..124 639 97.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10360-PA 124 GG10360-PA 1..124 1..124 653 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11307-PA 167 GH11307-PA 44..167 1..124 627 96 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17124-PC 124 CG17124-PC 1..124 1..124 643 100 Plus
CG17124-PB 124 CG17124-PB 1..124 1..124 643 100 Plus
CG17124-PA 124 CG17124-PA 1..124 1..124 643 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17816-PA 124 GI17816-PA 1..124 1..124 637 96.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26388-PA 123 GL26388-PA 1..123 1..124 625 97.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14336-PA 123 GA14336-PA 1..123 1..124 625 97.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11468-PA 124 GM11468-PA 1..124 1..124 653 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22228-PA 124 GD22228-PA 1..124 1..124 653 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17644-PA 124 GJ17644-PA 1..124 1..124 648 99.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23984-PA 124 GK23984-PA 1..124 1..124 643 98.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13361-PA 124 GE13361-PA 1..124 1..124 653 100 Plus

RE14405.hyp Sequence

Translation from 494 to 868

> RE14405.hyp
MQCGLEQMNDCERSPNRTNLRVNFNEKGAEVKERREKFLTAKYGSHQMSL
IRKRLAVEMWLYDELQKLFDPPNEAIDVDIDEILDMDTDDIRRSHLIRLL
SVCKRPQSDISKFIGDLLDRAKTL*

RE14405.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17124-PC 124 CG17124-PC 1..124 1..124 643 100 Plus
CG17124-PB 124 CG17124-PB 1..124 1..124 643 100 Plus
CG17124-PA 124 CG17124-PA 1..124 1..124 643 100 Plus