Clone RE14437 Report

Search the DGRC for RE14437

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:144
Well:37
Vector:pFlc-1
Associated Gene/Transcriptloqs-RB
Protein status:RE14437.pep: gold
Preliminary Size:2591
Sequenced Size:2034

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6866 2001-12-14 Blastp of sequenced clone
CG6866 2002-01-01 Sim4 clustering to Release 2
CG6866 2003-01-01 Sim4 clustering to Release 3
loqs 2008-04-29 Release 5.5 accounting
loqs 2008-08-15 Release 5.9 accounting
loqs 2008-12-18 5.12 accounting

Clone Sequence Records

RE14437.complete Sequence

2034 bp (2034 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071070

> RE14437.complete
AAAATATCAGTAAAATACATACAATTCGTGTGTGCGTCTGGATTTTGCTG
TATTTTTTATTTAAGAATGAATTATTAACTAACCATTAATAAATTATTAT
TAAATAAAAAACAGTTAAAACCGCGATTCAAACATACACACCGAATCCTC
CCGAAAACCGTGCAAAACAAGAACACCATGGACCAGGAGAATTTCCACGG
CTCCAGCTTGCCGCAGCAGCTACAGAACCTCCACATCCAGCCGCAGCAGG
CGTCCCCCAATCCTGTCCAGACGGGATTTGCTCCACGGCGGCACTATAAT
AACCTTGTCGGCCTGGGCAATGGAAATGCCGTCAGTGGTAGTCCGGTGAA
GGGTGCTCCGCTGGGGCAGCGCCATGTGAAGCTCAAGAAGGAGAAGATAT
CCGCCCAGGTTGCGCAGCTGTCTCAGCCAGGTCAGCTGCAGCTGTCAGAT
GTTGGTGATCCTGCCTTGGCGGGCGGATCGGGCTTACAAGGTGGAGTCGG
CCTTATGGGCGTAATATTGCCCAGCGACGAGGCCTTAAAGTTCGTCAGCG
AAACGGACGCCAATGGACTGGCCATGAAGACGCCCGTCAGCATTCTGCAA
GAGCTGCTAAGCCGACGAGGAATTACTCCCGGCTATGAACTTGTCCAGAT
CGAGGGCGCCATACATGAGCCGACCTTCCGGTTTCGCGTGTCCTTTAAAG
ACAAGGATACGCCCTTCACGGCCATGGGGGCAGGACGATCGAAGAAGGAG
GCCAAGCATGCGGCGGCCCGTGCGCTCATCGACAAGCTGATCGGCGCGCA
GCTGCCGGAATCGCCTAGCAGCTCCGCTGGTCCGTCGGTGACTGGGCTCA
CGGTCGCCGGAAGCGGAGGAGACGGCAATGCCAATGCCACAGGCGGAGGA
GATGCCAGCGACAAGACCGTTGGTAATCCGATTGGCTGGTTGCAGGAAAT
GTGCATGCAACGGCGATGGCCACCGCCGTCGTACGAAACGGAAACGGAAG
TGGGTCTTCCCCACGAGCGGCTCTTTACGATCGCCTGCTCGATACTCAAC
TACCGCGAGATGGGCAAGGGCAAAAGCAAGAAGATAGCCAAGCGCTTGGC
CGCCCACCGCATGTGGATGCGTCTGCAGGAGACTCCCATCGATTCGGGCA
AAATCAGCGACAGCATCTGCGGCGAGTTGGAGGGCGAACCCCGCAGTAGT
GAAAATTATTATGGTGAATTGAAAGATATCTCTGTGCCGACACTGACCAC
GCAGCACAGTAACAAAGTATCCCAGTTCCATAAGACCCTAAAAAATGCAA
CGGGCAAAAAACTGCTTAAGTTACAGAAGACTTGCTTGAAGAACAACAAG
ATTGATTACATCAAGCTGCTGGGCGAAATCGCCACGGAGAACCAGTTCGA
GGTGACCTATGTGGACATAGAGGAGAAGACCTTCTCTGGCCAGTTCCAGT
GCCTGGTTCAACTGTCCACGCTGCCCGTTGGCGTTTGCCACGGCAGCGGA
CCAACAGCTGCCGATGCCCAGCGGCATGCCGCCCAGAATGCCCTCGAGTA
CTTGAAGATCATGACCAAGAAGTAGGGGGTGCAGCCAACTGAATAGCAAA
ATCTGAACGCACACCACGACCACGATCACGAGTATTTGATGAGAGCGATT
ACCGAGTGGATACGGGATAACTAATGCACCAGTCTAATTGCTTTTCTTTC
CACTTTTTGGCTCAATGCAGTGGCGATGTTACATATATATATATATATAT
TTTGTTTCTTTTCCACCGATTCCTTTGATTAGGCAGTTGTATTTGTTAAC
TGCATATGTAAATGTTCATATATGTACTACACTTACCGATGAATGTATGT
ACGCTTGCAAATACAGACAAGCGTGTAATCGATATTGGAATCTTCTAGTC
GCTTTCAAATTCTGAAAAACGTAAAACGGCAGATAAAACTAGGTTTAAGG
TAGACTACGTGCTAGTTTGCGAAGGAAAAAGGCTTATGAATATAATCGGT
ATTTGGTAATCGCTAAATAAAAAAAAAAAAAAAA

RE14437.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
loqs-RB 2224 loqs-RB 38..2051 2..2015 10070 100 Plus
loqs.a 2221 loqs.a 38..2048 2..2015 10000 99.8 Plus
loqs-RC 2154 loqs-RC 9..1195 2..1188 5935 100 Plus
loqs-RC 2154 loqs-RC 1326..2152 1189..2015 4135 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13381568..13382336 134..902 3845 100 Plus
chr2L 23010047 chr2L 13383653..13384344 1324..2015 3460 100 Plus
chr2L 23010047 chr2L 13382409..13382694 903..1188 1430 100 Plus
chr2L 23010047 chr2L 13383329..13383466 1189..1326 690 100 Plus
chr2L 23010047 chr2L 13381328..13381459 2..133 660 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13382896..13383664 134..902 3845 100 Plus
2L 23513712 2L 13384981..13385672 1324..2015 3460 100 Plus
2L 23513712 2L 13383737..13384022 903..1188 1430 100 Plus
2L 23513712 2L 13384657..13384794 1189..1326 690 100 Plus
2L 23513712 2L 13382656..13382787 2..133 660 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13382896..13383664 134..902 3845 100 Plus
2L 23513712 2L 13384981..13385672 1324..2015 3460 100 Plus
2L 23513712 2L 13383737..13384022 903..1188 1430 100 Plus
2L 23513712 2L 13384657..13384794 1189..1326 690 100 Plus
2L 23513712 2L 13382656..13382787 2..133 660 100 Plus
Blast to na_te.dros performed 2019-03-15 14:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 833..883 1279..1328 117 72.5 Plus

RE14437.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:05:48 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13381568..13382336 134..902 100 -> Plus
chr2L 13382409..13382694 903..1188 100 -> Plus
chr2L 13383329..13383466 1189..1326 100 -> Plus
chr2L 13383656..13384346 1327..2018 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:56:23 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 1..1398 178..1575 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:04:13 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 1..1398 178..1575 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:17:28 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 1..1398 178..1575 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:28:53 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 1..1398 178..1575 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:49:31 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 1..1398 178..1575 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:31:38 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 7..2024 1..2018 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:04:13 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 7..2021 1..2014 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:17:28 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 3..2017 1..2014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:28:55 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 7..2024 1..2018 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:49:31 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
loqs-RB 3..2017 1..2014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:48 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13382654..13382787 1..133 99 -> Plus
2L 13382896..13383664 134..902 100 -> Plus
2L 13383737..13384022 903..1188 100 -> Plus
2L 13384657..13384794 1189..1326 100 -> Plus
2L 13384984..13385674 1327..2018 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:48 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13382654..13382787 1..133 99 -> Plus
2L 13382896..13383664 134..902 100 -> Plus
2L 13383737..13384022 903..1188 100 -> Plus
2L 13384657..13384794 1189..1326 100 -> Plus
2L 13384984..13385674 1327..2018 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:48 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13382654..13382787 1..133 99 -> Plus
2L 13382896..13383664 134..902 100 -> Plus
2L 13383737..13384022 903..1188 100 -> Plus
2L 13384657..13384794 1189..1326 100 -> Plus
2L 13384984..13385674 1327..2018 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:17:28 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13382896..13383664 134..902 100 -> Plus
arm_2L 13383737..13384022 903..1188 100 -> Plus
arm_2L 13382654..13382787 1..133 99 -> Plus
arm_2L 13384657..13384794 1189..1326 100 -> Plus
arm_2L 13384984..13385674 1327..2018 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:04:50 Download gff for RE14437.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13382896..13383664 134..902 100 -> Plus
2L 13383737..13384022 903..1188 100 -> Plus
2L 13384657..13384794 1189..1326 100 -> Plus
2L 13384984..13385674 1327..2018 99   Plus
2L 13382654..13382787 1..133 99 -> Plus

RE14437.hyp Sequence

Translation from 177 to 1574

> RE14437.hyp
MDQENFHGSSLPQQLQNLHIQPQQASPNPVQTGFAPRRHYNNLVGLGNGN
AVSGSPVKGAPLGQRHVKLKKEKISAQVAQLSQPGQLQLSDVGDPALAGG
SGLQGGVGLMGVILPSDEALKFVSETDANGLAMKTPVSILQELLSRRGIT
PGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARAL
IDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDASDKTVGN
PIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKS
KKIAKRLAAHRMWMRLQETPIDSGKISDSICGELEGEPRSSENYYGELKD
ISVPTLTTQHSNKVSQFHKTLKNATGKKLLKLQKTCLKNNKIDYIKLLGE
IATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCHGSGPTAADAQRH
AAQNALEYLKIMTKK*

RE14437.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
loqs-PB 465 CG6866-PB 1..465 1..465 2407 100 Plus
loqs-PF 464 CG6866-PF 1..464 1..465 2390 99.8 Plus
loqs-PA 419 CG6866-PA 1..419 1..465 2114 90.1 Plus
loqs-PE 418 CG6866-PE 1..418 1..465 2108 89.9 Plus
loqs-PC 383 CG6866-PC 1..345 1..345 1750 98 Plus

RE14437.pep Sequence

Translation from 177 to 1574

> RE14437.pep
MDQENFHGSSLPQQLQNLHIQPQQASPNPVQTGFAPRRHYNNLVGLGNGN
AVSGSPVKGAPLGQRHVKLKKEKISAQVAQLSQPGQLQLSDVGDPALAGG
SGLQGGVGLMGVILPSDEALKFVSETDANGLAMKTPVSILQELLSRRGIT
PGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARAL
IDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDASDKTVGN
PIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKS
KKIAKRLAAHRMWMRLQETPIDSGKISDSICGELEGEPRSSENYYGELKD
ISVPTLTTQHSNKVSQFHKTLKNATGKKLLKLQKTCLKNNKIDYIKLLGE
IATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCHGSGPTAADAQRH
AAQNALEYLKIMTKK*

RE14437.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23153-PA 472 GF23153-PA 1..472 1..465 1725 77.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23848-PA 464 GG23848-PA 1..464 1..465 2329 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13466-PA 489 GH13466-PA 44..489 33..465 1471 69.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
loqs-PB 465 CG6866-PB 1..465 1..465 2407 100 Plus
loqs-PF 464 CG6866-PF 1..464 1..465 2390 99.8 Plus
loqs-PA 419 CG6866-PA 1..419 1..465 2114 90.1 Plus
loqs-PE 418 CG6866-PE 1..418 1..465 2108 89.9 Plus
loqs-PC 383 CG6866-PC 1..345 1..345 1750 98 Plus
loqs-PD 359 CG6866-PD 1..337 1..337 1746 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17218-PA 454 GI17218-PA 26..454 33..465 1654 73.4 Plus
Dmoj\GI21342-PA 318 GI21342-PA 4..307 134..420 151 26.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26052-PA 470 GL26052-PA 125..470 116..465 1527 81.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19915-PA 477 GA19915-PA 1..477 1..465 1569 65 Plus
Dpse\GA22530-PA 153 GA22530-PA 1..153 312..465 679 82.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10477-PA 464 GM10477-PA 1..464 1..465 2303 95.7 Plus
Dsec\GM13239-PA 101 GM13239-PA 1..98 183..316 370 58.2 Plus
Dsec\GM26109-PA 123 GM26109-PA 21..123 153..260 274 55.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\loqs-PA 464 GD23896-PA 1..464 1..465 2293 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17975-PA 481 GJ17975-PA 56..481 33..465 1665 73.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14845-PA 512 GK14845-PA 77..512 29..465 1610 71.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18652-PA 465 GE18652-PA 1..465 1..465 2291 95.3 Plus