BDGP Sequence Production Resources |
Search the DGRC for RE14560
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 145 |
Well: | 60 |
Vector: | pFlc-1 |
Associated Gene/Transcript | msl-3-RA |
Protein status: | RE14560.pep: gold |
Preliminary Size: | 1619 |
Sequenced Size: | 2010 |
Gene | Date | Evidence |
---|---|---|
CG8631 | 2001-12-14 | Blastp of sequenced clone |
CG8631 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8631 | 2003-01-01 | Sim4 clustering to Release 3 |
msl-3 | 2008-04-29 | Release 5.5 accounting |
msl-3 | 2008-08-15 | Release 5.9 accounting |
msl-3 | 2008-12-18 | 5.12 accounting |
2010 bp (2010 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071074
> RE14560.complete ATTCGTTATAAATATCATCTCAGCGACGCCAGCAGTTGAATTCAATATTT AACATTTTGTATACATAAGTGACTGACTACGGCCCTATTTAACTGCAAGT AATGACGGAGCTAAGGGACGAGACACCGCTCTTTCACAAGGGCGAGATAG TCCTTTGCTACGAGCCGGATAAATCGAAGGCCCGTGTTCTTTACACCAGC AAGGTGCTAAACGTCTTTGAGCGCCGGAACGAGCATGGCCTGAGGTTCTA CGAGTACAAGATTCACTTCCAGGGCTGGCGTCCATCCTACGATCGCTGTG TGCGCGCCACCGTTCTATTGAAAGACACCGAGGAGAATCGCCAGTTGCAA AGGGAGCTGGCCGAAGCTGCCAAGCTGCAAATTCGTGGTGACTACTCCTA CAAGGGCACACCCGATAAGCCATCGGCCAAGAAGAAACGCGGCGGAAAAG CGGCCCACGTTGAGGAGCCAATAGTGGTTCCAATGGACACGGGACATCTT GAGGCGGAGCACGAAATGGCGCCCACTCCACGAGCAGCGGGCAACCGGAC GCGGGACAACAGCGGTGGCAAGCGAAAGGAAAAACCCCCGTCCGGAGATG GCCGATTAAAGGGAAACCGGGGCAGACAAACAGAGACCTTTTATAACAAT GCCATAAATGATGTATCGGTCTATAACCATGTGCCACAGGAGGATCGCAT TATGATGCGAGTCAGCGAGCGATTGCGAGAGCTTATAGAGTACGATCGGA ATATGATCAAGGTACTAGGCAAACAGCACGCACTGCCCGCCCGCGTGCCC ATCGTGACCATCATGGAAAACTTCGTCAAGCAGCAGGCCGTGGAGCTAGC CATTAGCATTAAACAGGACAGCTCGAGGGCCAGGAACACGCAGAGTCGCA ATGCCAGAATGGAGCGGGAATACGATCGCGTTATGTCCACTGTCTGCATG CTGAAGGAGGTGGTAGACGGATTGCGTATCTACTTTGAGTTCCACGTGGA TGACCACTTGCTGTATACGGAGGAGAAGGAGTATGTCCACAACTACCTCA CAGACGACAACATGCGCAACTGCAGCCTAATATTGAACAAGTCGTACGAG TATATCAATCCCAGCGGTGACACGGAACTGATCGGTCTGGACGGCACGCC AGTGGTAGAAGGGTCGGGCGACACCAATGGACAGATCGGAGTTATTAATA TCGGCGGTCCGGAGTACGAGAAGCAGTTGCAAAAATGCCTGCTCTACATT GTTACCGCCAGCGGGAAAAACACTGCGCAGGCCTATGAGAGGACTTCCCC ATATACGGCTGCCTACAAACTGCCCGTGGAGATGCGTGGATTTCTGAACG AAACATTCAAGTGGCGGCTTTTGTCAGCGGAATCGCCGCCAGAAAAGTCC ATGGTCTTTGGCGCTCCCCACCTGGTTAGGCTAATGATTAAAATGCCCAT GTTCTTAAACGCATCGCCGATCAGCAACAAGAAGCTAGAAGATCTACTTC CCCACCTCGACGCCTTCATCAACTACTTGGAGAACCACAGGGAGTGGTTC GACAGGGAAAACTTTGTTAACTCCACTGCCCTGCCCCAGGAAGATCTGCA GCGGGAGCTGTTGGACTCCCTGGATGGGATTGCTGCTTAGCTTTAGTTGA TCGTAGTTATCTAGTTTATTTATTATTACGATTAAAGCTTATGCTCTTTT ATTTAAAGATTTGTAATTGTCGTTTTGGTTTCTTCAACTACACACTTTGT AAACAACGCACTTCTATAAAAAAGTTTCCTAATGTGATCGTATAATCGAA TAATGCCTATAACTATATATGTTAAATATTGAAAATACGATTTTAACATT TTTTTTTGTTTTTTTTTTTTTTTTTGCTTAACCTAAGTTTTAGTTGAGTA GTACATGCTAGTATTTTTGTCATGCCTTGTTTTTTGTGCTCAAATATATT TAAGAGTTGGAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTCCTAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
msl-3-RA | 2056 | msl-3-RA | 94..2056 | 1..1963 | 9815 | 100 | Plus |
msl-3-RB | 2070 | msl-3-RB | 351..2070 | 202..1921 | 8600 | 100 | Plus |
msl-3-RB | 2070 | msl-3-RB | 33..237 | 1..205 | 1025 | 100 | Plus |
form3.a | 5013 | form3.a | 4926..5013 | 1963..1876 | 440 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 7116658..7117215 | 940..383 | 2760 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 7116103..7116599 | 1437..941 | 2440 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 7115467..7115911 | 1963..1519 | 2210 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 7117576..7117780 | 205..1 | 1025 | 100 | Minus |
chr3L | 24539361 | chr3L | 7117282..7117462 | 382..202 | 905 | 100 | Minus |
chr3L | 24539361 | chr3L | 7115963..7116047 | 1522..1438 | 425 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 7124401..7124958 | 940..383 | 2790 | 100 | Minus |
3L | 28110227 | 3L | 7123846..7124342 | 1437..941 | 2485 | 100 | Minus |
3L | 28110227 | 3L | 7123210..7123654 | 1963..1519 | 2210 | 99.8 | Minus |
3L | 28110227 | 3L | 7125319..7125523 | 205..1 | 1025 | 100 | Minus |
3L | 28110227 | 3L | 7125025..7125205 | 382..202 | 905 | 100 | Minus |
3L | 28110227 | 3L | 7123706..7123790 | 1522..1438 | 425 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 7117501..7118058 | 940..383 | 2790 | 100 | Minus |
3L | 28103327 | 3L | 7116946..7117442 | 1437..941 | 2485 | 100 | Minus |
3L | 28103327 | 3L | 7116310..7116754 | 1963..1519 | 2210 | 99.7 | Minus |
3L | 28103327 | 3L | 7118419..7118623 | 205..1 | 1025 | 100 | Minus |
3L | 28103327 | 3L | 7118125..7118305 | 382..202 | 905 | 100 | Minus |
3L | 28103327 | 3L | 7116806..7116890 | 1522..1438 | 425 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 728..866 | 1820..1972 | 138 | 61 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7115467..7115907 | 1523..1963 | 93 | <- | Minus |
chr3L | 7115963..7116047 | 1438..1522 | 100 | <- | Minus |
chr3L | 7116103..7116599 | 941..1437 | 99 | <- | Minus |
chr3L | 7116658..7117215 | 383..940 | 99 | <- | Minus |
chr3L | 7117282..7117460 | 204..382 | 100 | <- | Minus |
chr3L | 7117578..7117780 | 1..203 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-3-RA | 1..1539 | 102..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-3-RA | 1..1539 | 102..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-3-RA | 1..1539 | 102..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-3-RA | 1..1539 | 102..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-3-RA | 1..1539 | 102..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-3-RA | 1..1963 | 1..1963 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-3-RA | 1..1963 | 1..1963 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-3-RA | 11..1970 | 1..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-3-RA | 1..1963 | 1..1963 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msl-3-RA | 11..1970 | 1..1960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7123210..7123650 | 1523..1963 | 100 | <- | Minus |
3L | 7123706..7123790 | 1438..1522 | 100 | <- | Minus |
3L | 7123846..7124342 | 941..1437 | 100 | <- | Minus |
3L | 7124401..7124958 | 383..940 | 100 | <- | Minus |
3L | 7125025..7125203 | 204..382 | 100 | <- | Minus |
3L | 7125321..7125523 | 1..203 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7123210..7123650 | 1523..1963 | 100 | <- | Minus |
3L | 7123706..7123790 | 1438..1522 | 100 | <- | Minus |
3L | 7123846..7124342 | 941..1437 | 100 | <- | Minus |
3L | 7124401..7124958 | 383..940 | 100 | <- | Minus |
3L | 7125025..7125203 | 204..382 | 100 | <- | Minus |
3L | 7125321..7125523 | 1..203 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7123210..7123650 | 1523..1963 | 100 | <- | Minus |
3L | 7123706..7123790 | 1438..1522 | 100 | <- | Minus |
3L | 7123846..7124342 | 941..1437 | 100 | <- | Minus |
3L | 7124401..7124958 | 383..940 | 100 | <- | Minus |
3L | 7125025..7125203 | 204..382 | 100 | <- | Minus |
3L | 7125321..7125523 | 1..203 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7116310..7116750 | 1523..1963 | 100 | <- | Minus |
arm_3L | 7116806..7116890 | 1438..1522 | 100 | <- | Minus |
arm_3L | 7116946..7117442 | 941..1437 | 100 | <- | Minus |
arm_3L | 7117501..7118058 | 383..940 | 100 | <- | Minus |
arm_3L | 7118125..7118303 | 204..382 | 100 | <- | Minus |
arm_3L | 7118421..7118623 | 1..203 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7116806..7116890 | 1438..1522 | 100 | <- | Minus |
3L | 7116310..7116750 | 1523..1963 | 100 | <- | Minus |
3L | 7116946..7117442 | 941..1437 | 100 | <- | Minus |
3L | 7117501..7118058 | 383..940 | 100 | <- | Minus |
3L | 7118125..7118303 | 204..382 | 100 | <- | Minus |
3L | 7118421..7118623 | 1..203 | 100 | Minus |
Translation from 101 to 1639
> RE14560.pep MTELRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFY EYKIHFQGWRPSYDRCVRATVLLKDTEENRQLQRELAEAAKLQIRGDYSY KGTPDKPSAKKKRGGKAAHVEEPIVVPMDTGHLEAEHEMAPTPRAAGNRT RDNSGGKRKEKPPSGDGRLKGNRGRQTETFYNNAINDVSVYNHVPQEDRI MMRVSERLRELIEYDRNMIKVLGKQHALPARVPIVTIMENFVKQQAVELA ISIKQDSSRARNTQSRNARMEREYDRVMSTVCMLKEVVDGLRIYFEFHVD DHLLYTEEKEYVHNYLTDDNMRNCSLILNKSYEYINPSGDTELIGLDGTP VVEGSGDTNGQIGVINIGGPEYEKQLQKCLLYIVTASGKNTAQAYERTSP YTAAYKLPVEMRGFLNETFKWRLLSAESPPEKSMVFGAPHLVRLMIKMPM FLNASPISNKKLEDLLPHLDAFINYLENHREWFDRENFVNSTALPQEDLQ RELLDSLDGIAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24792-PA | 512 | GF24792-PA | 1..505 | 1..508 | 1874 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14998-PA | 512 | GG14998-PA | 1..512 | 1..512 | 2508 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17043-PA | 509 | GH17043-PA | 1..502 | 1..493 | 1410 | 57.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
msl-3-PA | 512 | CG8631-PA | 1..512 | 1..512 | 2679 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12047-PA | 523 | GI12047-PA | 1..522 | 1..489 | 1419 | 55.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25144-PA | 513 | GL25144-PA | 1..513 | 1..511 | 1732 | 66.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21222-PA | 513 | GA21222-PA | 1..513 | 1..511 | 1732 | 66.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13789-PA | 512 | GM13789-PA | 1..512 | 1..512 | 2641 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13090-PA | 512 | GD13090-PA | 1..512 | 1..512 | 2643 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\msl-3-PA | 509 | GJ13317-PA | 1..484 | 1..490 | 1533 | 61 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17539-PA | 526 | GK17539-PA | 1..512 | 1..501 | 1534 | 60.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20444-PA | 512 | GE20444-PA | 1..512 | 1..512 | 2526 | 91.2 | Plus |
Translation from 101 to 1639
> RE14560.hyp MTELRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFY EYKIHFQGWRPSYDRCVRATVLLKDTEENRQLQRELAEAAKLQIRGDYSY KGTPDKPSAKKKRGGKAAHVEEPIVVPMDTGHLEAEHEMAPTPRAAGNRT RDNSGGKRKEKPPSGDGRLKGNRGRQTETFYNNAINDVSVYNHVPQEDRI MMRVSERLRELIEYDRNMIKVLGKQHALPARVPIVTIMENFVKQQAVELA ISIKQDSSRARNTQSRNARMEREYDRVMSTVCMLKEVVDGLRIYFEFHVD DHLLYTEEKEYVHNYLTDDNMRNCSLILNKSYEYINPSGDTELIGLDGTP VVEGSGDTNGQIGVINIGGPEYEKQLQKCLLYIVTASGKNTAQAYERTSP YTAAYKLPVEMRGFLNETFKWRLLSAESPPEKSMVFGAPHLVRLMIKMPM FLNASPISNKKLEDLLPHLDAFINYLENHREWFDRENFVNSTALPQEDLQ RELLDSLDGIAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
msl-3-PA | 512 | CG8631-PA | 1..512 | 1..512 | 2679 | 100 | Plus |