Clone RE14560 Report

Search the DGRC for RE14560

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:145
Well:60
Vector:pFlc-1
Associated Gene/Transcriptmsl-3-RA
Protein status:RE14560.pep: gold
Preliminary Size:1619
Sequenced Size:2010

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8631 2001-12-14 Blastp of sequenced clone
CG8631 2002-01-01 Sim4 clustering to Release 2
CG8631 2003-01-01 Sim4 clustering to Release 3
msl-3 2008-04-29 Release 5.5 accounting
msl-3 2008-08-15 Release 5.9 accounting
msl-3 2008-12-18 5.12 accounting

Clone Sequence Records

RE14560.complete Sequence

2010 bp (2010 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071074

> RE14560.complete
ATTCGTTATAAATATCATCTCAGCGACGCCAGCAGTTGAATTCAATATTT
AACATTTTGTATACATAAGTGACTGACTACGGCCCTATTTAACTGCAAGT
AATGACGGAGCTAAGGGACGAGACACCGCTCTTTCACAAGGGCGAGATAG
TCCTTTGCTACGAGCCGGATAAATCGAAGGCCCGTGTTCTTTACACCAGC
AAGGTGCTAAACGTCTTTGAGCGCCGGAACGAGCATGGCCTGAGGTTCTA
CGAGTACAAGATTCACTTCCAGGGCTGGCGTCCATCCTACGATCGCTGTG
TGCGCGCCACCGTTCTATTGAAAGACACCGAGGAGAATCGCCAGTTGCAA
AGGGAGCTGGCCGAAGCTGCCAAGCTGCAAATTCGTGGTGACTACTCCTA
CAAGGGCACACCCGATAAGCCATCGGCCAAGAAGAAACGCGGCGGAAAAG
CGGCCCACGTTGAGGAGCCAATAGTGGTTCCAATGGACACGGGACATCTT
GAGGCGGAGCACGAAATGGCGCCCACTCCACGAGCAGCGGGCAACCGGAC
GCGGGACAACAGCGGTGGCAAGCGAAAGGAAAAACCCCCGTCCGGAGATG
GCCGATTAAAGGGAAACCGGGGCAGACAAACAGAGACCTTTTATAACAAT
GCCATAAATGATGTATCGGTCTATAACCATGTGCCACAGGAGGATCGCAT
TATGATGCGAGTCAGCGAGCGATTGCGAGAGCTTATAGAGTACGATCGGA
ATATGATCAAGGTACTAGGCAAACAGCACGCACTGCCCGCCCGCGTGCCC
ATCGTGACCATCATGGAAAACTTCGTCAAGCAGCAGGCCGTGGAGCTAGC
CATTAGCATTAAACAGGACAGCTCGAGGGCCAGGAACACGCAGAGTCGCA
ATGCCAGAATGGAGCGGGAATACGATCGCGTTATGTCCACTGTCTGCATG
CTGAAGGAGGTGGTAGACGGATTGCGTATCTACTTTGAGTTCCACGTGGA
TGACCACTTGCTGTATACGGAGGAGAAGGAGTATGTCCACAACTACCTCA
CAGACGACAACATGCGCAACTGCAGCCTAATATTGAACAAGTCGTACGAG
TATATCAATCCCAGCGGTGACACGGAACTGATCGGTCTGGACGGCACGCC
AGTGGTAGAAGGGTCGGGCGACACCAATGGACAGATCGGAGTTATTAATA
TCGGCGGTCCGGAGTACGAGAAGCAGTTGCAAAAATGCCTGCTCTACATT
GTTACCGCCAGCGGGAAAAACACTGCGCAGGCCTATGAGAGGACTTCCCC
ATATACGGCTGCCTACAAACTGCCCGTGGAGATGCGTGGATTTCTGAACG
AAACATTCAAGTGGCGGCTTTTGTCAGCGGAATCGCCGCCAGAAAAGTCC
ATGGTCTTTGGCGCTCCCCACCTGGTTAGGCTAATGATTAAAATGCCCAT
GTTCTTAAACGCATCGCCGATCAGCAACAAGAAGCTAGAAGATCTACTTC
CCCACCTCGACGCCTTCATCAACTACTTGGAGAACCACAGGGAGTGGTTC
GACAGGGAAAACTTTGTTAACTCCACTGCCCTGCCCCAGGAAGATCTGCA
GCGGGAGCTGTTGGACTCCCTGGATGGGATTGCTGCTTAGCTTTAGTTGA
TCGTAGTTATCTAGTTTATTTATTATTACGATTAAAGCTTATGCTCTTTT
ATTTAAAGATTTGTAATTGTCGTTTTGGTTTCTTCAACTACACACTTTGT
AAACAACGCACTTCTATAAAAAAGTTTCCTAATGTGATCGTATAATCGAA
TAATGCCTATAACTATATATGTTAAATATTGAAAATACGATTTTAACATT
TTTTTTTGTTTTTTTTTTTTTTTTTGCTTAACCTAAGTTTTAGTTGAGTA
GTACATGCTAGTATTTTTGTCATGCCTTGTTTTTTGTGCTCAAATATATT
TAAGAGTTGGAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTCCTAAAAAA
AAAAAAAAAA

RE14560.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
msl-3-RA 2056 msl-3-RA 94..2056 1..1963 9815 100 Plus
msl-3-RB 2070 msl-3-RB 351..2070 202..1921 8600 100 Plus
msl-3-RB 2070 msl-3-RB 33..237 1..205 1025 100 Plus
form3.a 5013 form3.a 4926..5013 1963..1876 440 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7116658..7117215 940..383 2760 99.6 Minus
chr3L 24539361 chr3L 7116103..7116599 1437..941 2440 99.4 Minus
chr3L 24539361 chr3L 7115467..7115911 1963..1519 2210 99.8 Minus
chr3L 24539361 chr3L 7117576..7117780 205..1 1025 100 Minus
chr3L 24539361 chr3L 7117282..7117462 382..202 905 100 Minus
chr3L 24539361 chr3L 7115963..7116047 1522..1438 425 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7124401..7124958 940..383 2790 100 Minus
3L 28110227 3L 7123846..7124342 1437..941 2485 100 Minus
3L 28110227 3L 7123210..7123654 1963..1519 2210 99.8 Minus
3L 28110227 3L 7125319..7125523 205..1 1025 100 Minus
3L 28110227 3L 7125025..7125205 382..202 905 100 Minus
3L 28110227 3L 7123706..7123790 1522..1438 425 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7117501..7118058 940..383 2790 100 Minus
3L 28103327 3L 7116946..7117442 1437..941 2485 100 Minus
3L 28103327 3L 7116310..7116754 1963..1519 2210 99.7 Minus
3L 28103327 3L 7118419..7118623 205..1 1025 100 Minus
3L 28103327 3L 7118125..7118305 382..202 905 100 Minus
3L 28103327 3L 7116806..7116890 1522..1438 425 100 Minus
Blast to na_te.dros performed 2019-03-16 12:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 728..866 1820..1972 138 61 Plus

RE14560.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:44:22 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7115467..7115907 1523..1963 93 <- Minus
chr3L 7115963..7116047 1438..1522 100 <- Minus
chr3L 7116103..7116599 941..1437 99 <- Minus
chr3L 7116658..7117215 383..940 99 <- Minus
chr3L 7117282..7117460 204..382 100 <- Minus
chr3L 7117578..7117780 1..203 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:56:28 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 1..1539 102..1640 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:56:08 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 1..1539 102..1640 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:06 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 1..1539 102..1640 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:38:43 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 1..1539 102..1640 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:42 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 1..1539 102..1640 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:09:47 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 1..1963 1..1963 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:56:08 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 1..1963 1..1963 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:06 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 11..1970 1..1960 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:38:44 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 1..1963 1..1963 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:42 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
msl-3-RA 11..1970 1..1960 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:22 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7123210..7123650 1523..1963 100 <- Minus
3L 7123706..7123790 1438..1522 100 <- Minus
3L 7123846..7124342 941..1437 100 <- Minus
3L 7124401..7124958 383..940 100 <- Minus
3L 7125025..7125203 204..382 100 <- Minus
3L 7125321..7125523 1..203 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:22 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7123210..7123650 1523..1963 100 <- Minus
3L 7123706..7123790 1438..1522 100 <- Minus
3L 7123846..7124342 941..1437 100 <- Minus
3L 7124401..7124958 383..940 100 <- Minus
3L 7125025..7125203 204..382 100 <- Minus
3L 7125321..7125523 1..203 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:22 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7123210..7123650 1523..1963 100 <- Minus
3L 7123706..7123790 1438..1522 100 <- Minus
3L 7123846..7124342 941..1437 100 <- Minus
3L 7124401..7124958 383..940 100 <- Minus
3L 7125025..7125203 204..382 100 <- Minus
3L 7125321..7125523 1..203 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:06 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7116310..7116750 1523..1963 100 <- Minus
arm_3L 7116806..7116890 1438..1522 100 <- Minus
arm_3L 7116946..7117442 941..1437 100 <- Minus
arm_3L 7117501..7118058 383..940 100 <- Minus
arm_3L 7118125..7118303 204..382 100 <- Minus
arm_3L 7118421..7118623 1..203 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:21:48 Download gff for RE14560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7116806..7116890 1438..1522 100 <- Minus
3L 7116310..7116750 1523..1963 100 <- Minus
3L 7116946..7117442 941..1437 100 <- Minus
3L 7117501..7118058 383..940 100 <- Minus
3L 7118125..7118303 204..382 100 <- Minus
3L 7118421..7118623 1..203 100   Minus

RE14560.pep Sequence

Translation from 101 to 1639

> RE14560.pep
MTELRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFY
EYKIHFQGWRPSYDRCVRATVLLKDTEENRQLQRELAEAAKLQIRGDYSY
KGTPDKPSAKKKRGGKAAHVEEPIVVPMDTGHLEAEHEMAPTPRAAGNRT
RDNSGGKRKEKPPSGDGRLKGNRGRQTETFYNNAINDVSVYNHVPQEDRI
MMRVSERLRELIEYDRNMIKVLGKQHALPARVPIVTIMENFVKQQAVELA
ISIKQDSSRARNTQSRNARMEREYDRVMSTVCMLKEVVDGLRIYFEFHVD
DHLLYTEEKEYVHNYLTDDNMRNCSLILNKSYEYINPSGDTELIGLDGTP
VVEGSGDTNGQIGVINIGGPEYEKQLQKCLLYIVTASGKNTAQAYERTSP
YTAAYKLPVEMRGFLNETFKWRLLSAESPPEKSMVFGAPHLVRLMIKMPM
FLNASPISNKKLEDLLPHLDAFINYLENHREWFDRENFVNSTALPQEDLQ
RELLDSLDGIAA*

RE14560.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24792-PA 512 GF24792-PA 1..505 1..508 1874 69.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14998-PA 512 GG14998-PA 1..512 1..512 2508 92.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17043-PA 509 GH17043-PA 1..502 1..493 1410 57.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
msl-3-PA 512 CG8631-PA 1..512 1..512 2679 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12047-PA 523 GI12047-PA 1..522 1..489 1419 55.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25144-PA 513 GL25144-PA 1..513 1..511 1732 66.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21222-PA 513 GA21222-PA 1..513 1..511 1732 66.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13789-PA 512 GM13789-PA 1..512 1..512 2641 95.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13090-PA 512 GD13090-PA 1..512 1..512 2643 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\msl-3-PA 509 GJ13317-PA 1..484 1..490 1533 61 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17539-PA 526 GK17539-PA 1..512 1..501 1534 60.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20444-PA 512 GE20444-PA 1..512 1..512 2526 91.2 Plus

RE14560.hyp Sequence

Translation from 101 to 1639

> RE14560.hyp
MTELRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFY
EYKIHFQGWRPSYDRCVRATVLLKDTEENRQLQRELAEAAKLQIRGDYSY
KGTPDKPSAKKKRGGKAAHVEEPIVVPMDTGHLEAEHEMAPTPRAAGNRT
RDNSGGKRKEKPPSGDGRLKGNRGRQTETFYNNAINDVSVYNHVPQEDRI
MMRVSERLRELIEYDRNMIKVLGKQHALPARVPIVTIMENFVKQQAVELA
ISIKQDSSRARNTQSRNARMEREYDRVMSTVCMLKEVVDGLRIYFEFHVD
DHLLYTEEKEYVHNYLTDDNMRNCSLILNKSYEYINPSGDTELIGLDGTP
VVEGSGDTNGQIGVINIGGPEYEKQLQKCLLYIVTASGKNTAQAYERTSP
YTAAYKLPVEMRGFLNETFKWRLLSAESPPEKSMVFGAPHLVRLMIKMPM
FLNASPISNKKLEDLLPHLDAFINYLENHREWFDRENFVNSTALPQEDLQ
RELLDSLDGIAA*

RE14560.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
msl-3-PA 512 CG8631-PA 1..512 1..512 2679 100 Plus