Clone RE14694 Report

Search the DGRC for RE14694

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:146
Well:94
Vector:pFlc-1
Associated Gene/TranscriptAcph-1-RA
Protein status:RE14694.pep: gold
Sequenced Size:1956

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7899 2001-12-14 Blastp of sequenced clone
CG7899 2002-01-01 Sim4 clustering to Release 2
CG7899 2003-01-01 Sim4 clustering to Release 3
Acph-1 2008-04-29 Release 5.5 accounting
Acph-1 2008-08-15 Release 5.9 accounting
Acph-1 2008-12-18 5.12 accounting

Clone Sequence Records

RE14694.complete Sequence

1956 bp (1956 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071077

> RE14694.complete
ATCGTTATCGAGACTTCGAAGCTTTGTGTGGTTATCAAACAGGTCCCCAA
AATTATAAACAAAGAAATCAGAAATTTGGTAAACTTCAGACTGCCTGCTG
TATATATGCGAACGACGAACGAACAGATCGCCAGTTATACGGTCGAGTCG
CTGTGGTTCACTTGTAACAAGTGTGGCTCGCAAAATGTGGAACCACCCAA
GCCAGCGCTGGCTCATCTTGATCTGCGTTATATGTTTGCTGTCTTTTGCG
CTGGCCAATTCGCTTCATGGCTATGCTAATGCTGAAGGTCATCCAGTGGA
GATTTCGGCCACATTGCCAGGCCAGCTGAAGTTTGTGCATGTCATATATC
GCCACGGCGACAGAACGCCCGTGGATCCCTATCCCACGGACCCCTGGGGC
GACAGGAAGTTCTGGCCCACCGGCTGGGGAGATTTGACCAATTTGGGCAA
GCAAGAGCACTACGACCTGGGAAAATGGCTGCGGAATCGCTATTCAAACC
TCCTACCGCCTATATACTCCAACGAGAACATCTACGTTCAGTCCACCGAC
GTGGATCGCACATTGATGAGTGCCCAGTCGAATCTGGCTGGTCTCTACGA
GCCGCAAGGGGAAGACATCTGGAACACGGACATCAACTGGCAACCCATAC
CCATTCACACCTCGCCCGAGAGGGAGGATCCCATACTGGCCGCTAAGGCA
CCTTGTCCTGCCTATGACTATGAGCTGGCCAGCCTGGAATCATCGCCAGA
ATTCAAGGCCTTGACCGAAAAACACCGAAATCTGTTTGCTTATTTGAGCG
AAAAAGGCGGACGCCCCGTGAAGACCTTCATTGATGCCCAGTATTTGAAT
AACACCTTGTTCATTGAGAATCTGTACAACATGACACTGCCAAAATGGAC
TAAAATGGTTTATGGGAGAGAGGAGCTCACGTATGTATCGAATTTCGCTT
TCGCCATCAGCTCTTATACGCGAAAGCTGGCGAGACTGAAGGCGGGGCCT
TTGCTAAAGGACATATTCCAGCGGTTTAAAGAGAAATCCTCCGGGAGCCT
AAAACCAGATCGTTCGATGTGGGTCTACAGTGCTCATGACACCACGGTAG
CCAGCGTTTTGAATGCGCTGAAATTATTTGAGCTGCACAGTCCTCCCTAC
ACGGCGTGCATAATGATGGAGTTGCGTGTGGATGAGACCAACACCCCGTT
GGTCTCTATTTTCTACAAGAACACCACAGCTGAACCCCTGCCTCTGGACA
TACCTGGTTGTGGGCCTTCCTGTCCGCTGACCAAACTTATGAACATCTAC
GAGGACGTTTTGCCCGTAGATTGGGAGCGCGAGTGCAAGCTATCCACGAT
GATGATGACTTATGAGGAAGCCAATCTTGGAACTGCGACGGGCATTCTCA
TTTTAATCGTAATTGCGCTGCTGTTCGCCAGCTATGGCCTCATGATCTAC
TACCGACGTCGCAACTACAAGCTGTATTCCTCGTACTCTCAAATGGCTTA
GGAGGCTTACCCATGCCATGCAGTTGAAGGCCCTACTTAAATCTGAATTA
AGAGCCTTGCCCGCTCTCTAGTTGCCAAAGTGATTTGCCTTTCTTGGTGT
TTTCTATATTGATTTTGGAAGTCATTGGAGTCTCAGGCGACAGTTGTTGT
TATTCGTGGTTACTACTTAGTTAAGCCGTGCATTTCACACAAAGTCAGTT
TGTATTGATTAGTTTTGTTAGTTTAAGTTTGTGCATTTGAAATTGAAAAA
CACAAGCTCGATAGCATTTAAATGGAGTAATAACTGGTTTTGTTGTTATT
CAGTGAAAGATATGGAATACAAAGACTGTGAATAGCGATCTTGAAGTTGC
ATACATATTATACATAACATATTTATACACATATACATTTTTATGAAATT
ATCATGAATGATAAATTTATTGTATTAAAATCGCTCAAACCAAAAAAAAA
AAAAAA

RE14694.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-RA 1957 Acph-1-RA 14..1957 1..1944 9705 99.9 Plus
Acph-1-RB 2026 Acph-1-RB 226..2024 146..1944 8980 99.9 Plus
Acph-1-RB 2026 Acph-1-RB 1..147 1..147 735 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25814458..25815147 1132..443 3390 99.4 Minus
chr3R 27901430 chr3R 25813526..25814074 1939..1391 2730 99.8 Minus
chr3R 27901430 chr3R 25814133..25814394 1392..1131 1280 99.2 Minus
chr3R 27901430 chr3R 25815361..25815558 343..146 975 99.5 Minus
chr3R 27901430 chr3R 25815637..25815783 147..1 735 100 Minus
chr3R 27901430 chr3R 25815204..25815302 442..344 495 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29992083..29992772 1132..443 3450 100 Minus
3R 32079331 3R 29991141..29991694 1944..1391 2755 99.8 Minus
3R 32079331 3R 29991753..29992014 1392..1131 1310 100 Minus
3R 32079331 3R 29992986..29993183 343..146 990 100 Minus
3R 32079331 3R 29993262..29993408 147..1 735 100 Minus
3R 32079331 3R 29992829..29992927 442..344 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29732914..29733603 1132..443 3450 100 Minus
3R 31820162 3R 29731972..29732525 1944..1391 2755 99.8 Minus
3R 31820162 3R 29732584..29732845 1392..1131 1310 100 Minus
3R 31820162 3R 29733817..29734014 343..146 990 100 Minus
3R 31820162 3R 29734093..29734239 147..1 735 100 Minus
3R 31820162 3R 29733660..29733758 442..344 495 100 Minus
Blast to na_te.dros performed 2019-03-16 12:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Galileo 2304 Dbuz\Galileo GALILEO 2304bp 1101..1221 1814..1695 123 61 Minus

RE14694.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:44:27 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25813524..25814073 1392..1941 99 <- Minus
chr3R 25814134..25814392 1133..1391 99 <- Minus
chr3R 25814458..25815147 443..1132 99 <- Minus
chr3R 25815204..25815302 344..442 100 <- Minus
chr3R 25815361..25815556 148..343 99 <- Minus
chr3R 25815637..25815783 1..147 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:56:37 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 13..1368 146..1501 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:46 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 13..1368 146..1501 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:08 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 13..1368 146..1501 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:16:58 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 13..1368 146..1501 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:50 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 13..1368 146..1501 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:44:51 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RA 1..1941 1..1941 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:46 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RA 1..1941 1..1941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:08 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RA 4..1944 1..1941 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:16:58 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RA 1..1941 1..1941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:50 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RA 4..1944 1..1941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:27 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29991144..29991693 1392..1941 99 <- Minus
3R 29991754..29992012 1133..1391 100 <- Minus
3R 29992083..29992772 443..1132 100 <- Minus
3R 29992829..29992927 344..442 100 <- Minus
3R 29992986..29993181 148..343 100 <- Minus
3R 29993262..29993408 1..147 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:27 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29991144..29991693 1392..1941 99 <- Minus
3R 29991754..29992012 1133..1391 100 <- Minus
3R 29992083..29992772 443..1132 100 <- Minus
3R 29992829..29992927 344..442 100 <- Minus
3R 29992986..29993181 148..343 100 <- Minus
3R 29993262..29993408 1..147 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:27 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29991144..29991693 1392..1941 99 <- Minus
3R 29991754..29992012 1133..1391 100 <- Minus
3R 29992083..29992772 443..1132 100 <- Minus
3R 29992829..29992927 344..442 100 <- Minus
3R 29992986..29993181 148..343 100 <- Minus
3R 29993262..29993408 1..147 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:08 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25816866..25817415 1392..1941 99 <- Minus
arm_3R 25817476..25817734 1133..1391 100 <- Minus
arm_3R 25817805..25818494 443..1132 100 <- Minus
arm_3R 25818551..25818649 344..442 100 <- Minus
arm_3R 25818708..25818903 148..343 100 <- Minus
arm_3R 25818984..25819130 1..147 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:52:43 Download gff for RE14694.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29733817..29734012 148..343 100 <- Minus
3R 29734093..29734239 1..147 100   Minus
3R 29731975..29732524 1392..1941 99 <- Minus
3R 29732585..29732843 1133..1391 100 <- Minus
3R 29732914..29733603 443..1132 100 <- Minus
3R 29733660..29733758 344..442 100 <- Minus

RE14694.pep Sequence

Translation from 184 to 1500

> RE14694.pep
MWNHPSQRWLILICVICLLSFALANSLHGYANAEGHPVEISATLPGQLKF
VHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGDLTNLGKQEHYDLGKWLR
NRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSNLAGLYEPQGEDIWNTDI
NWQPIPIHTSPEREDPILAAKAPCPAYDYELASLESSPEFKALTEKHRNL
FAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNMTLPKWTKMVYGREELTY
VSNFAFAISSYTRKLARLKAGPLLKDIFQRFKEKSSGSLKPDRSMWVYSA
HDTTVASVLNALKLFELHSPPYTACIMMELRVDETNTPLVSIFYKNTTAE
PLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERECKLSTMMMTYEEANLGT
ATGILILIVIALLFASYGLMIYYRRRNYKLYSSYSQMA*

RE14694.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16215-PA 438 GF16215-PA 1..438 1..438 1850 78.5 Plus
Dana\GF10754-PA 423 GF10754-PA 63..404 48..385 615 37 Plus
Dana\GF10755-PA 408 GF10755-PA 38..386 32..377 608 38 Plus
Dana\GF10756-PA 304 GF10756-PA 36..297 48..308 542 39.5 Plus
Dana\GF18050-PA 398 GF18050-PA 45..373 48..368 469 33.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11981-PA 436 GG11981-PA 1..436 1..438 2099 90.2 Plus
Dere\GG13404-PA 391 GG13404-PA 36..370 48..379 657 38.7 Plus
Dere\GG13402-PA 422 GG13402-PA 62..403 48..385 617 36.4 Plus
Dere\GG13403-PA 410 GG13403-PA 56..388 48..377 588 37.7 Plus
Dere\GG11088-PA 395 GG11088-PA 42..387 48..385 490 32.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22183-PA 444 GH22183-PA 14..444 10..438 1539 64.3 Plus
Dgri\GH14400-PA 390 GH14400-PA 5..369 11..379 642 35.7 Plus
Dgri\GH14397-PA 419 GH14397-PA 21..403 11..385 590 33.2 Plus
Dgri\GH14399-PA 397 GH14399-PA 34..383 39..384 578 35.6 Plus
Dgri\GH16334-PA 398 GH16334-PA 44..390 47..385 499 33.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-PA 438 CG7899-PA 1..438 1..438 2353 100 Plus
Acph-1-PB 455 CG7899-PB 18..455 1..438 2353 100 Plus
CG9449-PK 391 CG9449-PK 36..370 48..379 658 38.4 Plus
CG9449-PH 404 CG9449-PH 49..383 48..379 658 38.4 Plus
CG9449-PG 404 CG9449-PG 49..383 48..379 658 38.4 Plus
CG9449-PF 404 CG9449-PF 49..383 48..379 658 38.4 Plus
CG9452-PA 422 CG9452-PA 57..403 43..385 617 36.5 Plus
CG9451-PB 410 CG9451-PB 56..388 48..377 581 37.1 Plus
CG9451-PA 410 CG9451-PA 56..388 48..377 581 37.1 Plus
CG6656-PA 395 CG6656-PA 42..387 48..385 476 32.4 Plus
CG9449-PJ 164 CG9449-PJ 36..156 48..167 327 45.5 Plus
CG9449-PE 177 CG9449-PE 49..169 48..167 327 45.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21969-PA 428 GI21969-PA 9..428 17..438 1519 66.1 Plus
Dmoj\GI13526-PA 390 GI13526-PA 5..369 18..379 635 36.1 Plus
Dmoj\GI13524-PA 407 GI13524-PA 45..391 43..385 577 34.8 Plus
Dmoj\GI13525-PA 393 GI13525-PA 41..378 48..384 562 37.7 Plus
Dmoj\GI22190-PA 398 GI22190-PA 44..390 47..385 479 30.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13492-PA 446 GL13492-PA 1..446 1..438 1669 71.1 Plus
Dper\GL20896-PA 390 GL20896-PA 35..369 48..379 626 37.5 Plus
Dper\GL20895-PA 399 GL20895-PA 44..376 48..377 621 40.4 Plus
Dper\GL23800-PA 398 GL23800-PA 45..390 48..385 464 31.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26867-PA 446 GA26867-PA 1..446 1..438 1671 71.1 Plus
Dpse\GA21794-PA 390 GA21794-PA 35..369 48..379 625 37.5 Plus
Dpse\GA21796-PA 413 GA21796-PA 58..390 48..377 619 40.1 Plus
Dpse\GA28226-PA 425 GA28226-PA 64..405 48..385 618 37.3 Plus
Dpse\GA19756-PA 398 GA19756-PA 45..390 48..385 465 31.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12199-PA 438 GM12199-PA 1..438 1..438 2315 97.9 Plus
Dsec\GM18426-PA 391 GM18426-PA 20..370 38..379 655 38.6 Plus
Dsec\GM18213-PA 422 GM18213-PA 62..403 48..385 620 37 Plus
Dsec\GM18316-PA 411 GM18316-PA 57..389 48..377 589 37.4 Plus
Dsec\GM26381-PA 395 GM26381-PA 42..387 48..385 478 32.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17508-PA 406 GD17508-PA 1..404 1..404 2141 97.8 Plus
Dsim\GD12276-PA 422 GD12276-PA 62..403 48..385 614 36.7 Plus
Dsim\GD12277-PA 411 GD12277-PA 57..389 48..377 586 37.1 Plus
Dsim\GD20904-PA 363 GD20904-PA 49..355 88..385 408 32 Plus
Dsim\GD12278-PA 168 GD12278-PA 20..161 38..172 324 43.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Acph-PA 435 GJ14328-PA 8..435 14..438 1566 66 Plus
Dvir\GJ11885-PA 390 GJ11885-PA 17..369 36..379 634 37.9 Plus
Dvir\GJ11884-PA 399 GJ11884-PA 44..384 48..384 599 38 Plus
Dvir\GJ11883-PA 409 GJ11883-PA 51..392 48..385 586 35.7 Plus
Dvir\GJ24309-PA 398 GJ24309-PA 44..390 47..385 473 32.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14084-PA 434 GK14084-PA 19..434 22..438 1625 72.1 Plus
Dwil\GK19469-PA 393 GK19469-PA 28..372 38..379 645 37.9 Plus
Dwil\GK19447-PA 420 GK19447-PA 22..400 11..385 615 34.1 Plus
Dwil\GK19458-PA 414 GK19458-PA 60..400 48..384 576 37.7 Plus
Dwil\GK14232-PA 398 GK14232-PA 45..390 48..385 454 30.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10406-PA 438 GE10406-PA 1..438 1..438 2156 91.8 Plus
Dyak\GE22499-PA 391 GE22499-PA 36..370 48..379 658 39.3 Plus
Dyak\GE22497-PA 409 GE22497-PA 49..390 48..385 612 36.4 Plus
Dyak\GE22775-PA 409 GE22775-PA 49..390 48..385 603 36.2 Plus
Dyak\GE22776-PA 410 GE22776-PA 56..388 48..377 589 37.4 Plus

RE14694.hyp Sequence

Translation from 184 to 1500

> RE14694.hyp
MWNHPSQRWLILICVICLLSFALANSLHGYANAEGHPVEISATLPGQLKF
VHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGDLTNLGKQEHYDLGKWLR
NRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSNLAGLYEPQGEDIWNTDI
NWQPIPIHTSPEREDPILAAKAPCPAYDYELASLESSPEFKALTEKHRNL
FAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNMTLPKWTKMVYGREELTY
VSNFAFAISSYTRKLARLKAGPLLKDIFQRFKEKSSGSLKPDRSMWVYSA
HDTTVASVLNALKLFELHSPPYTACIMMELRVDETNTPLVSIFYKNTTAE
PLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERECKLSTMMMTYEEANLGT
ATGILILIVIALLFASYGLMIYYRRRNYKLYSSYSQMA*

RE14694.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-PA 438 CG7899-PA 1..438 1..438 2353 100 Plus
Acph-1-PB 455 CG7899-PB 18..455 1..438 2353 100 Plus
CG9449-PK 391 CG9449-PK 36..370 48..379 658 38.4 Plus
CG9449-PH 404 CG9449-PH 49..383 48..379 658 38.4 Plus
CG9449-PG 404 CG9449-PG 49..383 48..379 658 38.4 Plus