Clone RE14803 Report

Search the DGRC for RE14803

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:148
Well:3
Vector:pFlc-1
Associated Gene/Transcriptyellow-e3-RA
Protein status:RE14803.pep: gold
Preliminary Size:1303
Sequenced Size:1333

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17045 2001-12-14 Blastp of sequenced clone
CG17045 2002-01-01 Sim4 clustering to Release 2
CG17045 2003-01-01 Sim4 clustering to Release 3
yellow-e3 2008-04-29 Release 5.5 accounting
yellow-e3 2008-08-15 Release 5.9 accounting
yellow-e3 2008-12-18 5.12 accounting

Clone Sequence Records

RE14803.complete Sequence

1333 bp (1333 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071081

> RE14803.complete
AGTTTTCGGCAATCGTTTGAACCGCGCGGAACTGTCACTTAGCAGGTTCT
CATTTGATAGCCATGTTGGTCGTCCTGCTCGCATTATTTTGTGCAGTCCA
GGGCCAGGCATTGGTCCTCAAGGAGCTGCACACCCTGCATCAGTGGACGA
ACCTCAGTTTGGGCGACGATCTGTCCAAGGGCAATCGCTTTCTGCCGGTG
GATGTGGACATTGAGTACGGCGATGAGGGCAGGCATCGCACCTTTCTCAC
GATTCCGCGACTGGGGATGGCCACACCCTTCACACTGGCCACCGTCATTG
CGGAGCACAATGAGCTGGTGGAGAATCCCAGACTGGAACCGTATCCCAAC
GAGGAGTGGCACGTGCCACCCAACAATTGCTCCGGCATCACCTCAGCCAT
TAGGACTTATATCGACGAGTGCTGGCGACTCTGGGTGGTGGATTCAGGGC
AGGTAAACTCCCTGCAGTTGTGCCCGCCACAAATTCTCACATTTGATTTG
GTGAAGGACGAACTAGTCCAACGACACGCACTTCCGCCCGATTCCTACAT
TCCCAGCGTATCCATCTTCACGGCTTTGGTGGTGGATCTGGCCGAGAGGG
GCACACCCAACCGATGTGTTGGCGGCAGAGCGTATATAGCCGATGCCTGG
GGTTATGGTCTAATCGTGTTTGACTCCCTGACGGGACGATCCTGGCGCAT
AGAGCATGAGTCCATGAAGCCGTCGCCCTTGCTGAGATTAGGACGCTCCA
GCAACTCGCAGGCGGGAATATTTACAGTGAGCCTCAGTCCCAGCGAAGTG
GAAGACCGCTTTCTGTACTTTCACACGCTGAACTCCTTTAATGAGATGAG
GGTTCCGCTCTCCCTGATCAACAACGAGACCTTCTGGAAGTCTGCGAATG
CCAGCAGGGATAGCTTCCACAGCCTGGGCACCCGAGGAATCCAGTGCGAA
TCGGAGGTGATGGATCAGTCGGGGAATCTCTACTGCAGCCTCATCAGTTT
AGGGGCGCTGGTGAAATGGGAGGAGTCCGTGTCCAACTACACGGCGGATG
ACCTGCGTGTGGTGGCCTACAATCCGCACAAGATCAAGTTCGTCACGGGC
CTCAAGATCAACAGGAATTCCAAGGGAGAGGAGGAGCTGTGGGCCTTGAG
CAGCCAGCCGAAACTCTTTGTTGGCGGCGACTTGCCCGCGAACGAGGTCA
AGTTCCAAATAATTGGCTGCCGAACCGCTGACCTGCTTGCCAACACGCCG
TGTACAGTGGGCGCCGCAGAAACCACGCCCACCAACGTTTAATTAAAACT
TAGTTTTAACAAGTTCGAAAAAAAAAAAAAAAA

RE14803.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-e3-RA 1660 yellow-e3-RA 126..1445 1..1320 6570 99.8 Plus
yellow-e3.a 1535 yellow-e3.a 1..1320 1..1320 6570 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9228642..9229154 1315..803 2535 99.6 Minus
chr3R 27901430 chr3R 9229676..9230085 410..1 2005 99.3 Minus
chr3R 27901430 chr3R 9229218..9229611 804..411 1850 98 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13403420..13403937 1320..803 2575 99.8 Minus
3R 32079331 3R 13404459..13404868 410..1 2035 99.8 Minus
3R 32079331 3R 13404001..13404394 804..411 1970 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13144251..13144768 1320..803 2575 99.8 Minus
3R 31820162 3R 13145290..13145699 410..1 2035 99.7 Minus
3R 31820162 3R 13144832..13145225 804..411 1970 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:52:24 has no hits.

RE14803.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:53:16 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9228640..9229152 805..1317 99 <- Minus
chr3R 9229218..9229611 411..804 97 <- Minus
chr3R 9229676..9230085 1..410 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:56:43 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 1..1230 63..1292 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:10:22 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 1..1230 63..1292 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:19 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 1..1230 63..1292 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:30 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 1..1230 63..1292 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:16 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 1..1230 63..1292 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:40:11 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 1..1317 1..1317 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:10:22 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 1..1317 1..1317 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:19 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 3..1319 1..1317 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:31 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 1..1317 1..1317 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:16 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-e3-RA 3..1319 1..1317 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:16 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13403423..13403935 805..1317 99 <- Minus
3R 13404001..13404394 411..804 100 <- Minus
3R 13404459..13404868 1..410 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:16 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13403423..13403935 805..1317 99 <- Minus
3R 13404001..13404394 411..804 100 <- Minus
3R 13404459..13404868 1..410 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:16 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13403423..13403935 805..1317 99 <- Minus
3R 13404001..13404394 411..804 100 <- Minus
3R 13404459..13404868 1..410 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:19 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9229145..9229657 805..1317 99 <- Minus
arm_3R 9229723..9230116 411..804 100 <- Minus
arm_3R 9230181..9230590 1..410 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:46 Download gff for RE14803.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13144254..13144766 805..1317 99 <- Minus
3R 13144832..13145225 411..804 100 <- Minus
3R 13145290..13145699 1..410 99   Minus

RE14803.pep Sequence

Translation from 62 to 1291

> RE14803.pep
MLVVLLALFCAVQGQALVLKELHTLHQWTNLSLGDDLSKGNRFLPVDVDI
EYGDEGRHRTFLTIPRLGMATPFTLATVIAEHNELVENPRLEPYPNEEWH
VPPNNCSGITSAIRTYIDECWRLWVVDSGQVNSLQLCPPQILTFDLVKDE
LVQRHALPPDSYIPSVSIFTALVVDLAERGTPNRCVGGRAYIADAWGYGL
IVFDSLTGRSWRIEHESMKPSPLLRLGRSSNSQAGIFTVSLSPSEVEDRF
LYFHTLNSFNEMRVPLSLINNETFWKSANASRDSFHSLGTRGIQCESEVM
DQSGNLYCSLISLGALVKWEESVSNYTADDLRVVAYNPHKIKFVTGLKIN
RNSKGEEELWALSSQPKLFVGGDLPANEVKFQIIGCRTADLLANTPCTVG
AAETTPTNV*

RE14803.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17381-PA 418 GF17381-PA 12..416 2..405 1793 82.3 Plus
Dana\GF11858-PA 411 GF11858-PA 43..410 32..397 610 36.3 Plus
Dana\GF19909-PA 404 GF19909-PA 6..403 18..397 562 30.7 Plus
Dana\GF11856-PA 428 GF11856-PA 4..409 1..391 560 34.3 Plus
Dana\GF15359-PA 453 GF15359-PA 50..404 43..399 334 29.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17052-PA 409 GG17052-PA 1..409 1..409 2084 94.6 Plus
Dere\GG22850-PA 412 GG22850-PA 56..411 44..397 589 35.4 Plus
Dere\GG22849-PA 429 GG22849-PA 4..409 2..391 558 34.3 Plus
Dere\GG17051-PA 440 GG17051-PA 44..439 20..397 541 31.3 Plus
Dere\GG16380-PA 459 GG16380-PA 75..437 34..398 453 31 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18543-PA 416 GH18543-PA 8..413 1..403 1535 69.9 Plus
Dgri\GH21214-PA 428 GH21214-PA 42..414 20..384 607 38.1 Plus
Dgri\GH21216-PA 431 GH21216-PA 62..430 33..397 600 36 Plus
Dgri\GH21215-PA 446 GH21215-PA 83..427 45..391 573 38.2 Plus
Dgri\GH23996-PA 455 GH23996-PA 72..433 34..398 376 29.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-e3-PA 409 CG17045-PA 1..409 1..409 2156 100 Plus
yellow-d2-PA 412 CG9891-PA 44..411 32..397 581 35.1 Plus
yellow-d-PA 432 CG9889-PA 31..413 19..391 555 35.8 Plus
yellow-e2-PB 435 CG17044-PB 46..434 27..397 552 32.1 Plus
yellow-h-PA 463 CG1629-PA 79..440 34..397 430 30 Plus
y-PA 541 CG3757-PA 59..416 44..408 330 30.7 Plus
yellow-b-PB 453 CG17914-PB 41..404 27..399 322 28 Plus
yellow-b-PA 453 CG17914-PA 41..404 27..399 322 28 Plus
yellow-c-PB 438 CG4182-PB 49..436 38..397 313 27.6 Plus
yellow-c-PA 438 CG4182-PA 49..436 38..397 313 27.6 Plus
yellow-f-PC 413 CG18550-PC 1..406 1..393 268 26.2 Plus
yellow-f-PB 418 CG18550-PB 76..411 57..393 264 27.2 Plus
yellow-f-PA 429 CG18550-PA 87..422 57..393 264 27.2 Plus
yellow-f2-PA 452 CG8063-PA 110..437 57..383 242 25.4 Plus
yellow-e-PA 530 CG9792-PA 1..386 1..384 229 25.9 Plus
yellow-g-PA 393 CG5717-PA 55..236 24..213 160 26.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23242-PA 408 GI23242-PA 23..408 15..404 1499 71.8 Plus
Dmoj\GI20502-PA 429 GI20502-PA 16..428 1..397 604 34.1 Plus
Dmoj\GI20501-PA 443 GI20501-PA 34..424 11..391 594 37.5 Plus
Dmoj\GI11002-PA 470 GI11002-PA 82..446 34..397 399 28.8 Plus
Dmoj\GI13248-PA 432 GI13248-PA 64..430 58..397 344 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23987-PA 409 GL23987-PA 7..405 2..407 1750 79.7 Plus
Dper\GL17571-PA 418 GL17571-PA 12..417 6..397 591 34 Plus
Dper\GL17570-PA 434 GL17570-PA 32..414 19..391 564 36.1 Plus
Dper\GL23986-PA 429 GL23986-PA 31..427 20..398 563 29.8 Plus
Dper\GL18156-PA 466 GL18156-PA 81..443 34..397 405 29.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14292-PA 409 GA14292-PA 7..405 2..407 1750 79.7 Plus
Dpse\GA22105-PA 422 GA22105-PA 16..421 6..397 592 34.2 Plus
Dpse\GA14291-PB 426 GA14291-PB 28..424 20..398 564 29.8 Plus
Dpse\GA22103-PA 434 GA22103-PA 32..414 19..391 564 36.1 Plus
Dpse\GA27858-PA 427 GA27858-PA 42..404 34..397 406 29.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25937-PA 409 GM25937-PA 1..409 1..409 2129 97.3 Plus
Dsec\GM16008-PA 412 GM16008-PA 56..411 44..397 583 34.9 Plus
Dsec\GM16007-PA 430 GM16007-PA 29..411 19..391 561 35.5 Plus
Dsec\GM25936-PA 426 GM25936-PA 35..425 25..397 541 31.5 Plus
Dsec\GM15882-PA 438 GM15882-PA 6..436 2..397 325 26.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20499-PA 387 GD20499-PA 1..344 1..344 1797 97.1 Plus
Dsim\GD11759-PA 412 GD11759-PA 56..411 44..397 596 35.7 Plus
Dsim\GD11758-PA 432 GD11758-PA 31..413 19..391 561 35.5 Plus
Dsim\GD20498-PA 426 GD20498-PA 35..425 25..397 547 31.7 Plus
Dsim\GD23989-PA 438 GD23989-PA 6..438 2..399 326 26.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10739-PA 415 GJ10739-PA 13..415 4..407 1520 70.7 Plus
Dvir\GJ22352-PA 430 GJ22352-PA 72..429 44..397 604 36.5 Plus
Dvir\GJ22351-PA 453 GJ22351-PA 42..427 9..384 571 35.4 Plus
Dvir\GJ14923-PA 455 GJ14923-PA 68..432 34..397 418 30.2 Plus
Dvir\GJ11869-PA 435 GJ11869-PA 67..433 58..397 321 27.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13344-PA 401 GK13344-PA 14..392 7..402 1527 71 Plus
Dwil\GK13343-PA 420 GK13343-PA 4..416 3..398 592 31.4 Plus
Dwil\GK23285-PA 422 GK23285-PA 53..421 33..397 591 35.8 Plus
Dwil\GK23284-PA 446 GK23284-PA 45..427 19..391 587 36.3 Plus
Dwil\GK13672-PA 468 GK13672-PA 78..430 31..384 409 30.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24440-PA 411 GE24440-PA 1..411 1..409 2064 93.7 Plus
Dyak\GE14285-PA 412 GE14285-PA 44..411 32..397 592 34.8 Plus
Dyak\GE14284-PA 430 GE14284-PA 29..411 19..391 569 35.3 Plus
Dyak\GE24439-PA 440 GE24439-PA 44..439 20..397 537 31.1 Plus
Dyak\GE14541-PA 463 GE14541-PA 79..451 34..408 463 31 Plus

RE14803.hyp Sequence

Translation from 62 to 1291

> RE14803.hyp
MLVVLLALFCAVQGQALVLKELHTLHQWTNLSLGDDLSKGNRFLPVDVDI
EYGDEGRHRTFLTIPRLGMATPFTLATVIAEHNELVENPRLEPYPNEEWH
VPPNNCSGITSAIRTYIDECWRLWVVDSGQVNSLQLCPPQILTFDLVKDE
LVQRHALPPDSYIPSVSIFTALVVDLAERGTPNRCVGGRAYIADAWGYGL
IVFDSLTGRSWRIEHESMKPSPLLRLGRSSNSQAGIFTVSLSPSEVEDRF
LYFHTLNSFNEMRVPLSLINNETFWKSANASRDSFHSLGTRGIQCESEVM
DQSGNLYCSLISLGALVKWEESVSNYTADDLRVVAYNPHKIKFVTGLKIN
RNSKGEEELWALSSQPKLFVGGDLPANEVKFQIIGCRTADLLANTPCTVG
AAETTPTNV*

RE14803.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-e3-PA 409 CG17045-PA 1..409 1..409 2156 100 Plus
yellow-d2-PA 412 CG9891-PA 44..411 32..397 581 35.1 Plus
yellow-d-PA 432 CG9889-PA 31..413 19..391 555 35.8 Plus
yellow-e2-PB 435 CG17044-PB 46..434 27..397 552 32.1 Plus
yellow-h-PA 463 CG1629-PA 79..440 34..397 430 30 Plus