Clone RE15080 Report

Search the DGRC for RE15080

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:150
Well:80
Vector:pFlc-1
Associated Gene/TranscriptCG10035-RA
Protein status:RE15080.pep: gold
Sequenced Size:1813

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10035 2008-04-29 Picked prior to 5.5

Clone Sequence Records

RE15080.complete Sequence

1813 bp assembled on 2009-04-09

GenBank Submission: BT082039.1

> RE15080.complete
AGTTGTTTTTCCACACCCAAGCGAAGATGAAGTACCTCAAAGACTGCAGT
TTCCATGTCCTGTTGGTTCTGCTGCTAATGATCCGTGGATCGCTTTGTGT
GCCAGCTTTGGACGCAGCTCCTCCGGCTGCCACACCCAACACCGTGGAAG
AGTCGGAAAATCTGGTCGAGGGCAGTGGCGAACCAGTTGTCGCACCCACA
GACGTGGTACCTGCAGCCAGCAATGGTACCACTCCTCCGGCTGAAGGAAA
CTCGGAAGCAGCGGTGCCAGACAACGTGGCCAGTGGTAGCAGCATTGATC
CCACCACCATTTACGCTGGAGGCCTACTCACTCCCGAGGCCTTTCAGCAG
TACCTGAGTCAGTATGGAGCGTATGCTCCTTACTCCTATCCTGCTCCTGT
TGCGGGAACAGCAGCTGGCATTTACCCGTACCCTGGACCCATTGTGGTGC
AGACGGGCTACGAGGGATTCCTGGTGCCCACTAATACCGCAGGACAATCG
GACAGCACCACTGTCCTGGCTCCCACTGCCCAGCCCAACTCCTCGAATCC
ACTGATGACATTTGTCTCCAATCTTCTGCCCACGATCCTGATGTCCACGC
TCTTTCGCATCGCTGCCGTTGTGGTTTCCGCCGTGGGCATCATCCTCTTT
GGCGGTGCCATCACCAGTGCCCTGTGCAGGATCACTCCAATCTGTGAAAT
ACCCGCCCGTGCTGTGAATATCCTGCGGACGGGTGGTGCCCAGGATGTGG
GTCGCATGCTGGCCGAGGAGATGACTCCGGAACGAGTGCGTCGGGCAACG
GAATTCGTGCGCAACGCCATCCGGAAGTACAAGCAACTGCAGAAGCTGGT
GGAGGCATCGGAGGCGGTGACCGAGTTGACCAACTAGGGATGGCGCAATG
GGTGTAGGTTTAGTGCTGGCTCGTAAATTAGGTGGAATGCAAAATATACT
TTTAATGATGCTATAAAACATGATTTCACTTTTTTCTGTCGCAAGGGGTT
CTTAAAAGGTGTTGAGATTTTGTGTTGCAAATTTGTTAGTGAAATATATA
AACACGATTCAAAAAATGGTTCGCAAAAAGTGTTTACATACACGACTTAT
GATATAATCGTTTGATTTGTCTATTGATTATTAGCTTTAAATTGTTTTGG
AACTTCTGTGGCAACCCTCTGGTGGATTTGTTGGCGCACAATGACCAATG
AGAAGTATGTGTGCACTTGCATATGTAGTTTGTAACCGCTCAATGCCACA
AGCAGCACGTTTGTTAGCTAACTGAACTCGCGATTGTTCTAATAGTTGGT
CGGTCAATGGCCCAAGTGGCTTGTGGATCCCTCGAGGGGCGAAAAGGGGT
CCAAGTGGATTTATATGTACCCCAGTGAAATCATCGCGTGCATTCAACTG
CGGTGTTGAAATCGCAATTGGCAATTGTCGTGTGGCACTCGCGGAATTTA
CAGAGCTACAGAAACACAATCTCACTTTTATGAACCATGACAGAGATTGG
AATTTTAAATATAAGTGGAGGCTGATTAGTGTGATCAGGACAAAACTACT
GTTGCATAATCGCTTTTATCATTTATATAAATTTTTATCATTTTAGTGGG
ACGAACTACTTAAATATTTAAAATACGATTAAAAAATAATAATAAAAATA
ATAAGGGTACCGCCTATCAACATTTCAAGCCGAAAAGCAAAAGTAATTAA
TATTTGCTGATAAGAGAGTGAACAAATAAATGCCTTTCGTTTGTTTTTTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA
AAAAAAAAAAAAA

RE15080.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10035.b 2016 CG10035.b 242..1988 1..1747 8735 100 Plus
CG10035-RA 1842 CG10035-RA 68..1814 1..1747 8735 100 Plus
CG10035.a 1750 CG10035.a 5..1748 1..1747 8665 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8206253..8207734 1747..266 7395 99.9 Minus
chr3R 27901430 chr3R 8207803..8208068 266..1 1315 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12380871..12382352 1747..266 7410 100 Minus
3R 32079331 3R 12382421..12382686 266..1 1330 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12121702..12123183 1747..266 7410 100 Minus
3R 31820162 3R 12123252..12123517 266..1 1330 100 Minus
Blast to na_te.dros performed 2019-03-15 18:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 1330..1487 1762..1614 139 57.6 Minus
Stalker 7256 Stalker STALKER 7256bp 1222..1297 1762..1689 123 64.5 Minus
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 2079..2237 982..1149 116 58.5 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 8129..8200 885..815 114 63.9 Minus
TART-C 11124 TART-C TARTC 11124bp 9573..9644 885..815 114 63.9 Minus

RE15080.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:47:07 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8206250..8207733 267..1750 96 <- Minus
chr3R 8207803..8208068 1..266 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:09:26 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10035-RA 1..861 27..887 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:44:56 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10035-RA 1..861 27..887 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:30:11 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10035-RA 1..861 27..887 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:49 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10035-RA 1..861 27..887 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-10 11:30:07 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10035-RA 5..971 1..967 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:44:56 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10035-RA 5..971 1..967 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:30:11 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10035-RA 5..971 1..967 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:49 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10035-RB 6..1754 1..1749 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:07 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12382421..12382686 1..266 100   Minus
3R 12380868..12382351 267..1750 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:07 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12382421..12382686 1..266 100   Minus
3R 12380868..12382351 267..1750 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:07 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12382421..12382686 1..266 100   Minus
3R 12380868..12382351 267..1750 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:30:11 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8208143..8208408 1..266 100   Minus
arm_3R 8206590..8208073 267..1750 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:20:08 Download gff for RE15080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12121699..12123182 267..1750 99 <- Minus
3R 12123252..12123517 1..266 100   Minus

RE15080.hyp Sequence

Translation from 2 to 886

> RE15080.hyp
LFFHTQAKMKYLKDCSFHVLLVLLLMIRGSLCVPALDAAPPAATPNTVEE
SENLVEGSGEPVVAPTDVVPAASNGTTPPAEGNSEAAVPDNVASGSSIDP
TTIYAGGLLTPEAFQQYLSQYGAYAPYSYPAPVAGTAAGIYPYPGPIVVQ
TGYEGFLVPTNTAGQSDSTTVLAPTAQPNSSNPLMTFVSNLLPTILMSTL
FRIAAVVVSAVGIILFGGAITSALCRITPICEIPARAVNILRTGGAQDVG
RMLAEEMTPERVRRATEFVRNAIRKYKQLQKLVEASEAVTELTN*

RE15080.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10035-PB 286 CG10035-PB 1..286 9..294 1446 100 Plus
CG10035-PA 286 CG10035-PA 1..286 9..294 1446 100 Plus

RE15080.pep Sequence

Translation from 2 to 886

> RE15080.pep
LFFHTQAKMKYLKDCSFHVLLVLLLMIRGSLCVPALDAAPPAATPNTVEE
SENLVEGSGEPVVAPTDVVPAASNGTTPPAEGNSEAAVPDNVASGSSIDP
TTIYAGGLLTPEAFQQYLSQYGAYAPYSYPAPVAGTAAGIYPYPGPIVVQ
TGYEGFLVPTNTAGQSDSTTVLAPTAQPNSSNPLMTFVSNLLPTILMSTL
FRIAAVVVSAVGIILFGGAITSALCRITPICEIPARAVNILRTGGAQDVG
RMLAEEMTPERVRRATEFVRNAIRKYKQLQKLVEASEAVTELTN*

RE15080.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17050-PA 280 GF17050-PA 1..279 12..290 933 67.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17134-PA 289 GG17134-PA 1..289 9..294 1235 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20175-PA 287 GH20175-PA 26..287 33..284 717 59.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10035-PB 286 CG10035-PB 1..286 9..294 1446 100 Plus
CG10035-PA 286 CG10035-PA 1..286 9..294 1446 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24378-PA 284 GI24378-PA 10..278 25..284 774 61.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27183-PA 308 GL27183-PA 23..304 9..284 1009 72 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10022-PA 284 GA10022-PA 6..280 15..284 996 72.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26018-PA 273 GM26018-PA 1..273 9..294 1203 88.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20576-PA 286 GD20576-PA 1..286 9..294 1346 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24384-PA 281 GJ24384-PA 18..277 33..284 727 63.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11199-PA 278 GK11199-PA 7..275 14..284 809 62.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24526-PA 286 GE24526-PA 1..286 9..294 1248 92 Plus