BDGP Sequence Production Resources |
Search the DGRC for RE15080
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 150 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10035-RA |
Protein status: | RE15080.pep: gold |
Sequenced Size: | 1813 |
Gene | Date | Evidence |
---|---|---|
CG10035 | 2008-04-29 | Picked prior to 5.5 |
1813 bp assembled on 2009-04-09
GenBank Submission: BT082039.1
> RE15080.complete AGTTGTTTTTCCACACCCAAGCGAAGATGAAGTACCTCAAAGACTGCAGT TTCCATGTCCTGTTGGTTCTGCTGCTAATGATCCGTGGATCGCTTTGTGT GCCAGCTTTGGACGCAGCTCCTCCGGCTGCCACACCCAACACCGTGGAAG AGTCGGAAAATCTGGTCGAGGGCAGTGGCGAACCAGTTGTCGCACCCACA GACGTGGTACCTGCAGCCAGCAATGGTACCACTCCTCCGGCTGAAGGAAA CTCGGAAGCAGCGGTGCCAGACAACGTGGCCAGTGGTAGCAGCATTGATC CCACCACCATTTACGCTGGAGGCCTACTCACTCCCGAGGCCTTTCAGCAG TACCTGAGTCAGTATGGAGCGTATGCTCCTTACTCCTATCCTGCTCCTGT TGCGGGAACAGCAGCTGGCATTTACCCGTACCCTGGACCCATTGTGGTGC AGACGGGCTACGAGGGATTCCTGGTGCCCACTAATACCGCAGGACAATCG GACAGCACCACTGTCCTGGCTCCCACTGCCCAGCCCAACTCCTCGAATCC ACTGATGACATTTGTCTCCAATCTTCTGCCCACGATCCTGATGTCCACGC TCTTTCGCATCGCTGCCGTTGTGGTTTCCGCCGTGGGCATCATCCTCTTT GGCGGTGCCATCACCAGTGCCCTGTGCAGGATCACTCCAATCTGTGAAAT ACCCGCCCGTGCTGTGAATATCCTGCGGACGGGTGGTGCCCAGGATGTGG GTCGCATGCTGGCCGAGGAGATGACTCCGGAACGAGTGCGTCGGGCAACG GAATTCGTGCGCAACGCCATCCGGAAGTACAAGCAACTGCAGAAGCTGGT GGAGGCATCGGAGGCGGTGACCGAGTTGACCAACTAGGGATGGCGCAATG GGTGTAGGTTTAGTGCTGGCTCGTAAATTAGGTGGAATGCAAAATATACT TTTAATGATGCTATAAAACATGATTTCACTTTTTTCTGTCGCAAGGGGTT CTTAAAAGGTGTTGAGATTTTGTGTTGCAAATTTGTTAGTGAAATATATA AACACGATTCAAAAAATGGTTCGCAAAAAGTGTTTACATACACGACTTAT GATATAATCGTTTGATTTGTCTATTGATTATTAGCTTTAAATTGTTTTGG AACTTCTGTGGCAACCCTCTGGTGGATTTGTTGGCGCACAATGACCAATG AGAAGTATGTGTGCACTTGCATATGTAGTTTGTAACCGCTCAATGCCACA AGCAGCACGTTTGTTAGCTAACTGAACTCGCGATTGTTCTAATAGTTGGT CGGTCAATGGCCCAAGTGGCTTGTGGATCCCTCGAGGGGCGAAAAGGGGT CCAAGTGGATTTATATGTACCCCAGTGAAATCATCGCGTGCATTCAACTG CGGTGTTGAAATCGCAATTGGCAATTGTCGTGTGGCACTCGCGGAATTTA CAGAGCTACAGAAACACAATCTCACTTTTATGAACCATGACAGAGATTGG AATTTTAAATATAAGTGGAGGCTGATTAGTGTGATCAGGACAAAACTACT GTTGCATAATCGCTTTTATCATTTATATAAATTTTTATCATTTTAGTGGG ACGAACTACTTAAATATTTAAAATACGATTAAAAAATAATAATAAAAATA ATAAGGGTACCGCCTATCAACATTTCAAGCCGAAAAGCAAAAGTAATTAA TATTTGCTGATAAGAGAGTGAACAAATAAATGCCTTTCGTTTGTTTTTTT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 1330..1487 | 1762..1614 | 139 | 57.6 | Minus |
Stalker | 7256 | Stalker STALKER 7256bp | 1222..1297 | 1762..1689 | 123 | 64.5 | Minus |
Dbuz\BuT2 | 2775 | Dbuz\BuT2 BUT2 2775bp | 2079..2237 | 982..1149 | 116 | 58.5 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 8129..8200 | 885..815 | 114 | 63.9 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 9573..9644 | 885..815 | 114 | 63.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 8206250..8207733 | 267..1750 | 96 | <- | Minus |
chr3R | 8207803..8208068 | 1..266 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10035-RA | 1..861 | 27..887 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10035-RA | 1..861 | 27..887 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10035-RA | 1..861 | 27..887 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10035-RA | 1..861 | 27..887 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10035-RA | 5..971 | 1..967 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10035-RA | 5..971 | 1..967 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10035-RA | 5..971 | 1..967 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10035-RB | 6..1754 | 1..1749 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12382421..12382686 | 1..266 | 100 | Minus | |
3R | 12380868..12382351 | 267..1750 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12382421..12382686 | 1..266 | 100 | Minus | |
3R | 12380868..12382351 | 267..1750 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12382421..12382686 | 1..266 | 100 | Minus | |
3R | 12380868..12382351 | 267..1750 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 8208143..8208408 | 1..266 | 100 | Minus | |
arm_3R | 8206590..8208073 | 267..1750 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12121699..12123182 | 267..1750 | 99 | <- | Minus |
3R | 12123252..12123517 | 1..266 | 100 | Minus |
Translation from 2 to 886
> RE15080.hyp LFFHTQAKMKYLKDCSFHVLLVLLLMIRGSLCVPALDAAPPAATPNTVEE SENLVEGSGEPVVAPTDVVPAASNGTTPPAEGNSEAAVPDNVASGSSIDP TTIYAGGLLTPEAFQQYLSQYGAYAPYSYPAPVAGTAAGIYPYPGPIVVQ TGYEGFLVPTNTAGQSDSTTVLAPTAQPNSSNPLMTFVSNLLPTILMSTL FRIAAVVVSAVGIILFGGAITSALCRITPICEIPARAVNILRTGGAQDVG RMLAEEMTPERVRRATEFVRNAIRKYKQLQKLVEASEAVTELTN*
Translation from 2 to 886
> RE15080.pep LFFHTQAKMKYLKDCSFHVLLVLLLMIRGSLCVPALDAAPPAATPNTVEE SENLVEGSGEPVVAPTDVVPAASNGTTPPAEGNSEAAVPDNVASGSSIDP TTIYAGGLLTPEAFQQYLSQYGAYAPYSYPAPVAGTAAGIYPYPGPIVVQ TGYEGFLVPTNTAGQSDSTTVLAPTAQPNSSNPLMTFVSNLLPTILMSTL FRIAAVVVSAVGIILFGGAITSALCRITPICEIPARAVNILRTGGAQDVG RMLAEEMTPERVRRATEFVRNAIRKYKQLQKLVEASEAVTELTN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17050-PA | 280 | GF17050-PA | 1..279 | 12..290 | 933 | 67.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17134-PA | 289 | GG17134-PA | 1..289 | 9..294 | 1235 | 91.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20175-PA | 287 | GH20175-PA | 26..287 | 33..284 | 717 | 59.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10035-PB | 286 | CG10035-PB | 1..286 | 9..294 | 1446 | 100 | Plus |
CG10035-PA | 286 | CG10035-PA | 1..286 | 9..294 | 1446 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24378-PA | 284 | GI24378-PA | 10..278 | 25..284 | 774 | 61.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27183-PA | 308 | GL27183-PA | 23..304 | 9..284 | 1009 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10022-PA | 284 | GA10022-PA | 6..280 | 15..284 | 996 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26018-PA | 273 | GM26018-PA | 1..273 | 9..294 | 1203 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20576-PA | 286 | GD20576-PA | 1..286 | 9..294 | 1346 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24384-PA | 281 | GJ24384-PA | 18..277 | 33..284 | 727 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11199-PA | 278 | GK11199-PA | 7..275 | 14..284 | 809 | 62.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24526-PA | 286 | GE24526-PA | 1..286 | 9..294 | 1248 | 92 | Plus |