Clone RE15215 Report

Search the DGRC for RE15215

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:152
Well:15
Vector:pFlc-1
Associated Gene/TranscriptCG9772-RD
Protein status:RE15215.pep: wuzgold
Preliminary Size:2243
Sequenced Size:2045

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9772 2002-09-28 Blastp of sequenced clone
CG9772 2008-04-29 Release 5.5 accounting
CG9772 2008-08-15 Release 5.9 accounting
CG9772 2008-12-18 5.12 accounting

Clone Sequence Records

RE15215.complete Sequence

2045 bp (2045 high quality bases) assembled on 2002-09-28

GenBank Submission: BT001563

> RE15215.complete
GAAGTTTTTGTGTTTACGGCGGTGAAAAAATAGATTTCGTGTAAATATGA
GCAGTCGCAAGCACAGAGGCTCCGAAAACATGGAAAATTTGTGCCCGGTG
ACCAGGTGAGTTTTCCTTTGCTTGGGGTGTGGGTTCAAGCAGCAGACCAC
TGAACTGGTCGCGTGACGTCACACGCGCCACAAGTGTCCAAAAGAGGTCA
AGAAAGTAACTTATTGAATTGCAGGGTTCTTGACCCTTTCTTTCATCAGC
CATTCTGCTGATGAAGCACGATCGAACTGCACACTTTTAATAAATTTTCG
ACTATTGCAGAAAGCGCTCGACTAATAAGAACCACGTCTCTGTTGTGGGC
GCTCTAGTTTCCACTACGAAGTCATCGCACTACGAGCACCCTTCCTCGCC
CTCGGCACTAACTTTTGAGGCCCTAGAAGAGATGGGAATCGGAATGCTTG
ATTCCGAAGAAAGCAGCTCCTCAGCCCTCTCGGCCATCGCTTTGGCGGTT
AGCGCCACCAGCGACGACAACTCAAATGAGACGACCCCGTGCGCCAGTGT
GTCGCGCATGGCGCACCAGCTACAGCACACGCAACGGCTAAGTCTGGGCT
CTACGGGGGACATCACACTGGATAGCCCAGCTGTGGAGGATTCACTGTCG
ATGTCCCGTCAATCGGCCGAGAAGCTGCAGATTCTGGCGCAGGCTAAGCG
CTCGTCGTTGGGTTCTGAAGGTAGCGGCAATTCAAACTCGCCCAGCAAAC
GTTTGCGCAACCCCCTGGCTGCAGTCACCTGTAACAACCAGATTGATGGG
ACTGCTTCGCTCAATTTTCAGCCATCAACCAGCAGGTTGGCGCAAGTTCG
CCAGGCAAAAAAGCCCTCGACAACAAATATTACAACCCGAATAGTGGCAG
CGGACAGTTTCTTTGTGTTTCGCACCCCGGCCATGAGTGCCCACATCAAC
AGCGGCATAAACTACTTTGAAAGACTTTCAGACGAAATACTACTTGACAT
CTTTAAGTGGCTCCCGAAGAAGACGCTGCTGCGCATGGCTACCGTTTGTC
GACGCTTTAACCGCTGCTCTCGCGATGAGACTTTGTGGACAAGGCTAGAT
TTGGGTTTGCGGACAATTAGACCAGGTGCCCTCGAGCAAATTGTACGGCG
GGGAGTCCTTGTAATACGTCTGGCCCAGACTAGTATCCAGGAGCCCGCAT
TTGCACCATATACAGAAGTGTTTAGGACCCGATTACAATATCTTGACCTG
AGTATGGCTTCCATCACCCGAAGCTCACTGCTGACACTATTGTCCCACTG
CCGCCAGCTAAAGAAAATAAGCTTAGAGAATATTGAGCTCGATGATGACA
TCTGTGCAGAGATCGCAAAGAATGAAGCTTTGGAGGCGGTCAATCTGACT
ATGGCTAGTGGCCTGACGTCCAACAGTGTTCGCCTGATGATGGAGTCACT
TACCAGCCTAAGCAGCTTAAACATATCGTGGACTGACCTAAGTGCGGATG
CTGTTACGGCGTTGGTTACCCACATTTCCCCCAACTTAATTCGGCTCAAT
ATCGCTGGCTGCCGCCGCGTTTTGTTTGACTCGCATGTTGCAACCCTGCA
AAAACGGTGTCCTCAGTTGTTGGAGCTTGATCTATCTGATTGCAATAGTC
TAACACCAACAGTCATTACTGCAATTATGAAGTTCAAGATGCTGGAATAT
TTGTCCGTCTCCCGATGCTATCTTATTCCAGCAACCAAATTTATTGAACT
TAAGAGTATGCCCTCGCTAACCTATTTAGACATATTTGGGATGCTGTCGG
ACACTGCAATGGAAGTCCTTGAGAAACAACTGCCAAAAATGGGTATAAAC
AAATTCATTCACAGTTCGGTATCCCGCCCGACTGTTGGCACGCGACGCAC
CTCCATTTGGGGTCTGCGCACGCGCGACTAAGTCTCGACTCTGCTGCTTC
CGTTACCATTTGAATTTGTTTTGCTGCGTAAGCCACCCGTAACGCAGTTA
TTTTATTCTCAATTCAACAACATAAATAATCAAAAAAAAAAAAAA

RE15215.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9772-RD 2213 CG9772-RD 23..2054 1..2032 10160 100 Plus
CG9772-RA 2075 CG9772-RA 192..1916 308..2032 8625 100 Plus
CG9772.b 1897 CG9772.b 137..1574 308..1745 7190 100 Plus
CG9772.b 1897 CG9772.b 1589..1876 1745..2032 1440 100 Plus
CG9772.b 1897 CG9772.b 35..139 1..105 525 100 Plus
CG9772-RA 2075 CG9772-RA 90..194 1..105 525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 162189..163372 1184..1 5920 100 Minus
chr3R 27901430 chr3R 161729..162128 1584..1185 2000 100 Minus
chr3R 27901430 chr3R 161163..161449 2031..1745 1435 100 Minus
chr3R 27901430 chr3R 161506..161665 1744..1585 800 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4336469..4337652 1184..1 5920 100 Minus
3R 32079331 3R 4336009..4336408 1584..1185 2000 100 Minus
3R 32079331 3R 4335442..4335729 2032..1745 1440 100 Minus
3R 32079331 3R 4335786..4335945 1744..1585 800 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4077300..4078483 1184..1 5920 100 Minus
3R 31820162 3R 4076840..4077239 1584..1185 2000 100 Minus
3R 31820162 3R 4076273..4076560 2032..1745 1440 100 Minus
3R 31820162 3R 4076617..4076776 1744..1585 800 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:24:46 has no hits.

RE15215.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:25:34 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 161163..161449 1745..2031 100 <- Minus
chr3R 161506..161665 1585..1744 100 <- Minus
chr3R 161729..162128 1185..1584 100 <- Minus
chr3R 162189..163372 1..1184 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:06 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RB 118..1746 301..1931 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:13:18 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RB 118..1746 301..1931 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:46 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RB 118..1746 301..1931 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:04:21 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RB 118..1746 301..1931 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:09:33 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 57..1680 308..1931 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:35:56 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RD 1..2031 1..2031 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:13:18 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RD 1..2031 1..2031 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:46 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RB 192..1920 301..2031 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:04:21 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RD 1..2031 1..2031 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:09:33 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 125..1848 308..2031 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:34 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4336009..4336408 1185..1584 100 <- Minus
3R 4335443..4335729 1745..2031 100 <- Minus
3R 4335786..4335945 1585..1744 100 <- Minus
3R 4336469..4337652 1..1184 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:34 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4336009..4336408 1185..1584 100 <- Minus
3R 4335443..4335729 1745..2031 100 <- Minus
3R 4335786..4335945 1585..1744 100 <- Minus
3R 4336469..4337652 1..1184 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:34 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4336009..4336408 1185..1584 100 <- Minus
3R 4335443..4335729 1745..2031 100 <- Minus
3R 4335786..4335945 1585..1744 100 <- Minus
3R 4336469..4337652 1..1184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:46 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 161165..161451 1745..2031 100 <- Minus
arm_3R 161508..161667 1585..1744 100 <- Minus
arm_3R 161731..162130 1185..1584 100 <- Minus
arm_3R 162191..163374 1..1184 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:36:05 Download gff for RE15215.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4076274..4076560 1745..2031 100 <- Minus
3R 4076617..4076776 1585..1744 100 <- Minus
3R 4076840..4077239 1185..1584 100 <- Minus
3R 4077300..4078483 1..1184 100   Minus

RE15215.pep Sequence

Translation from 431 to 1930

> RE15215.pep
MGIGMLDSEESSSSALSAIALAVSATSDDNSNETTPCASVSRMAHQLQHT
QRLSLGSTGDITLDSPAVEDSLSMSRQSAEKLQILAQAKRSSLGSEGSGN
SNSPSKRLRNPLAAVTCNNQIDGTASLNFQPSTSRLAQVRQAKKPSTTNI
TTRIVAADSFFVFRTPAMSAHINSGINYFERLSDEILLDIFKWLPKKTLL
RMATVCRRFNRCSRDETLWTRLDLGLRTIRPGALEQIVRRGVLVIRLAQT
SIQEPAFAPYTEVFRTRLQYLDLSMASITRSSLLTLLSHCRQLKKISLEN
IELDDDICAEIAKNEALEAVNLTMASGLTSNSVRLMMESLTSLSSLNISW
TDLSADAVTALVTHISPNLIRLNIAGCRRVLFDSHVATLQKRCPQLLELD
LSDCNSLTPTVITAIMKFKMLEYLSVSRCYLIPATKFIELKSMPSLTYLD
IFGMLSDTAMEVLEKQLPKMGINKFIHSSVSRPTVGTRRTSIWGLRTRD*

RE15215.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16815-PA 561 GF16815-PA 58..561 1..499 2027 79.9 Plus
Dana\GF15907-PA 383 GF15907-PA 68..357 25..309 1009 68.9 Plus
Dana\GF11789-PA 637 GF11789-PA 226..458 179..429 188 26.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11654-PA 561 GG11654-PA 61..561 1..499 2248 91.4 Plus
Dere\GG22638-PA 641 GG22638-PA 230..462 179..429 196 26.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18735-PA 579 GH18735-PA 55..579 1..499 1682 69.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Skp2-PE 559 CG9772-PE 61..559 1..499 2482 100 Plus
Skp2-PA 559 CG9772-PA 61..559 1..499 2482 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22887-PA 589 GI22887-PA 62..589 1..499 1675 67.5 Plus
Dmoj\GI21037-PA 677 GI21037-PA 266..498 179..429 194 25.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12326-PA 533 GL12326-PA 60..515 1..459 1683 74.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22024-PB 548 GA22024-PB 53..548 1..499 1946 77.3 Plus
Dpse\GA22024-PA 555 GA22024-PA 60..555 1..499 1942 77.3 Plus
Dpse\GA22024-PC 341 GA22024-PC 60..308 1..252 836 71.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10708-PA 557 GM10708-PA 61..557 1..499 2331 94.6 Plus
Dsec\GM20416-PA 653 GM20416-PA 242..474 179..429 197 26.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19685-PA 557 GD19685-PA 61..557 1..499 2344 95 Plus
Dsim\GD25892-PA 615 GD25892-PA 204..436 179..429 194 26.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14183-PA 584 GJ14183-PA 61..584 1..499 1732 70.3 Plus
Dvir\GJ21964-PA 660 GJ21964-PA 249..481 179..429 185 24.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11443-PA 590 GK11443-PA 63..590 1..499 1786 68.4 Plus
Dwil\GK21630-PA 634 GK21630-PA 223..455 179..429 185 26 Plus
Dwil\GK11217-PA 764 GK11217-PA 393..678 178..470 156 26 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25359-PA 561 GE25359-PA 61..561 1..499 2246 89 Plus
Dyak\GE13509-PA 640 GE13509-PA 229..461 179..429 197 26.6 Plus

RE15215.hyp Sequence

Translation from 431 to 1930

> RE15215.hyp
MGIGMLDSEESSSSALSAIALAVSATSDDNSNETTPCASVSRMAHQLQHT
QRLSLGSTGDITLDSPAVEDSLSMSRQSAEKLQILAQAKRSSLGSEGSGN
SNSPSKRLRNPLAAVTCNNQIDGTASLNFQPSTSRLAQVRQAKKPSTTNI
TTRIVAADSFFVFRTPAMSAHINSGINYFERLSDEILLDIFKWLPKKTLL
RMATVCRRFNRCSRDETLWTRLDLGLRTIRPGALEQIVRRGVLVIRLAQT
SIQEPAFAPYTEVFRTRLQYLDLSMASITRSSLLTLLSHCRQLKKISLEN
IELDDDICAEIAKNEALEAVNLTMASGLTSNSVRLMMESLTSLSSLNISW
TDLSADAVTALVTHISPNLIRLNIAGCRRVLFDSHVATLQKRCPQLLELD
LSDCNSLTPTVITAIMKFKMLEYLSVSRCYLIPATKFIELKSMPSLTYLD
IFGMLSDTAMEVLEKQLPKMGINKFIHSSVSRPTVGTRRTSIWGLRTRD*

RE15215.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Skp2-PE 559 CG9772-PE 61..559 1..499 2482 100 Plus
Skp2-PA 559 CG9772-PA 61..559 1..499 2482 100 Plus