Clone RE15216 Report

Search the DGRC for RE15216

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:152
Well:16
Vector:pFlc-1
Associated Gene/TranscriptCG33217-RA
Protein status:RE15216.pep: gold
Sequenced Size:2237

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17164 2002-01-01 Sim4 clustering to Release 2
CG33217 2002-05-17 Blastp of sequenced clone
CG33217 2008-04-29 Release 5.5 accounting
CG33217 2008-08-15 Release 5.9 accounting
CG33217 2008-12-18 5.12 accounting

Clone Sequence Records

RE15216.complete Sequence

2237 bp (2237 high quality bases) assembled on 2002-05-17

GenBank Submission: AY119114

> RE15216.complete
ACACTAATTTGATAACAGCGTCAACCACATGTCGGCTTTATTTATAATGT
TGGAATCGAAATAAGTTAGGAAAGTGTGATTCAGTTTGATATCAGTATGG
ATCAATTCATAACTTCGACTTTGAAAAACCGTAGACGACGTTCTCTTGGA
TTGCGACTCTTAATATGTTACCTTAAAAAAAGTGACATTAAATTAGAGGA
AAATGTTAATACATGGACATATTTATTAGTTCAATCATGCAAATTACCTG
AGTTGTGTTCATATGGTGATTTAATATTTTCCGCTATGGCACTCCTTCTG
GACAAAATCCAGAGTGACGGTAATGTGTCAAAAGTATTCGCATCTGCTCA
TTTATCTAAAGTACTGGAATGCTTATCTCACAACGAAATATATAAGCACA
ATCGCTCAACTATTGCTGCCTTACACACAATCAAGAAATGCCTAAAATAT
TACCCAAAAGGAATAAAAACTAAATCATCAAGTATCAAAAATATATTAGT
ACTATTAATTGACAGCCAAAACGATGAAGTTGTTTATCAATCTGGTGAAT
GTTGGTTTTTGTTACACAAAATTCATGGCATTTCCGATAAAGAACATATG
GATAATAAAACTGAATGGAAGGATTTTCAATTATCTTTACTGAGTAATAT
CCAATATATTATAAATAGAACAATAGTTATGCCTGACGAATCCGTTAACA
GCCCTTTTATGCCAAATCATTTTGGAGCTTTCACTTTTGTAGCTGTAAAA
GATCCTTTTGAAAGGGCTTCAAAAGCTTTTCGACGGATTTTTAATCTTAT
TGAATATATCAAAATTGCTTTAAGCAAACAATTTGTTTTCAAAAAGAATA
TTTGCGTACATCAAATCTTGTCTTTAATACAAAATGGACTAAATGCACAC
GTAAACCAACAAAATGTACGAATTAATCATGCATATCTTGAGACATTTTT
TCCGCAAATGCACATAAAATTATTGGAGCTTTTGGAAATTGTCATTAAAA
CATGTCATACACACCTAAGGATGGACTTTCGGCTTGTTCTAAATATTTTA
ATGGAAGCCCTTGAAAAAACAAACAAATCAATGTTACTAGAATCAAATTT
AAAGGAAGTTTTGAATATGCGCCTAGTTGTGTACAGAGTAATATCTTTAT
GGTGCTCTACTCTACAAGAAGGAAGCCATTGCGAAATTATTGCGGATACT
CTTATCAAAGAAGTGTTTGATGATATATTAACGCGAAGCCCAACTACTAA
AAAAAGTGTAAACGCACCATACATGAAACTTTCACCTGAAACTCTATTTT
CGATGTTGAAATGTTCATTAAGTAATGAAGACTATCGTATGCTTAGTCAA
CAAGCACACTCTTGCCTACAACAGTTTTTGTTATCTTCTGGTCATTTGAT
AAAGCATCAACTTTTAAAGGCGGTGCACCACACCTTATTGGGAATTTGTG
TTCAAATGCATTCTCAGTCTAGCAAAGAACCAGACTTGTGGGATATTTGG
GACGGGCGCTTGGAAGTTTATAAGTCTTTCACAGTTCTATTGAAATTACG
AAACTATGGATGTCCTACGCCTTCTGAAATAATTTGGAATCTTTTGCACG
AATCCCGATTATTTAATAATAACATTGCACTTAAGCAAAGTCATAGTTCT
AACTTGGAAACGATGCTTCATCCTCAAAAGGCGGATATTAACTTTAAAAG
TGTTGACAATTTAAAGAAAACAATCGCCTTTTCAACAAATAAAACGGAAA
ATAGACACGATTTGTTACAAACTATCAAGAGTCCCGAAGACCAATTATGT
AATAATGAAAGTCCACTGATATCGGCCATTGAAACCATTGCAAATAATAA
GGATAATCAAAAAAACCCTGGCTACGACAATAATTCGTTGAATAAAAAGA
AACCTTTTGAAGTAGTTTGTAAAAATGACTCAAAAGATTTAATTGCTGAA
GATACACCAAAAAATATTAATGAGATACCAGATGGCCCTTTGCTCTCATC
AAAAATCAACAGTTCAGAGAGTTTACAAGGACAACCCCTAGAAATTTTGA
ATGGCAATAATGTGAACTCTAATTTAATATCATCCTGTTGCAGTGCTGAA
GAATCTGTAAAAATGTTTCCTTCGAACTTGGAAAAATTAGATGATGCTAA
AATGATAGCCGACTTGGAAGCAACATTCGTTGGTGAACTTAAATAAAAAT
AAAAACTAGTTTGGTGTGCCTAAAAAAAAAAAAAAAA

RE15216.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG33217.a 2754 CG33217.a 35..2257 1..2223 11085 99.9 Plus
CG33217-RA 2255 CG33217-RA 35..2253 1..2219 11080 99.9 Plus
CG41454-RA 930 CG41454-RA 1..727 1456..2182 3635 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 23120333..23121138 1414..2219 4015 99.9 Plus
chr3L 24539361 chr3L 23126434..23127239 1414..2219 4015 99.9 Plus
chr3L 24539361 chr3L 23115647..23116182 289..824 2665 99.8 Plus
chr3L 24539361 chr3L 23115130..23115331 88..289 1010 100 Plus
chr3L 24539361 chr3L 23116238..23116420 819..1001 900 99.5 Plus
chr3L 24539361 chr3L 23120120..23120282 1258..1420 815 100 Plus
chr3L 24539361 chr3L 23126221..23126383 1258..1420 815 100 Plus
chr3L 24539361 chr3L 23125542..23125691 1113..1262 750 100 Plus
chr3L 24539361 chr3L 23119441..23119590 1113..1262 750 100 Plus
chr3L 24539361 chr3L 23117191..23117302 1002..1113 560 100 Plus
chr3L 24539361 chr3L 23114962..23115053 1..92 445 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23131402..23132211 1414..2223 4020 99.8 Plus
3L 28110227 3L 23137503..23138312 1414..2223 4020 99.8 Plus
3L 28110227 3L 23126716..23127251 289..824 2665 99.8 Plus
3L 28110227 3L 23126199..23126400 88..289 1010 100 Plus
3L 28110227 3L 23127307..23127489 819..1001 900 99.5 Plus
3L 28110227 3L 23131189..23131351 1258..1420 815 100 Plus
3L 28110227 3L 23137290..23137452 1258..1420 815 100 Plus
3L 28110227 3L 23136611..23136760 1113..1262 750 100 Plus
3L 28110227 3L 23130510..23130659 1113..1262 750 100 Plus
3L 28110227 3L 23128260..23128371 1002..1113 560 100 Plus
3L 28110227 3L 23126031..23126122 1..92 445 98.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 23130603..23131412 1414..2223 4020 99.7 Plus
3L 28103327 3L 23124502..23125311 1414..2223 4020 99.7 Plus
3L 28103327 3L 23119816..23120351 289..824 2665 99.8 Plus
3L 28103327 3L 23119299..23119500 88..289 1010 100 Plus
3L 28103327 3L 23120407..23120589 819..1001 900 99.4 Plus
3L 28103327 3L 23130390..23130552 1258..1420 815 100 Plus
3L 28103327 3L 23124289..23124451 1258..1420 815 100 Plus
3L 28103327 3L 23129711..23129860 1113..1262 750 100 Plus
3L 28103327 3L 23123610..23123759 1113..1262 750 100 Plus
3L 28103327 3L 23121360..23121471 1002..1113 560 100 Plus
3L 28103327 3L 23119131..23119222 1..92 445 98.9 Plus
Blast to na_te.dros performed 2019-03-15 22:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 2905..2960 987..933 133 73.2 Minus

RE15216.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:39:04 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 23114962..23115049 1..88 100 -> Plus
chr3L 23115131..23115331 89..289 100 -> Plus
chr3L 23115648..23116182 290..824 99 -> Plus
chr3L 23116244..23116420 825..1001 100 -> Plus
chr3L 23117191..23117301 1002..1112 100 -> Plus
chr3L 23119441..23119585 1113..1257 100 -> Plus
chr3L 23120120..23120285 1258..1419 97 -> Plus
chr3L 23120339..23121139 1420..2221 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:47:38 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 1..2100 97..2196 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:27:47 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 1..2100 97..2196 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:40:50 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 1..2100 97..2196 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:44 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 1..2100 97..2196 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:24:49 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 1..2220 1..2221 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:47:38 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 1..2220 1..2221 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:27:47 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 7..2226 1..2221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:40:50 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 1..2220 1..2221 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:44 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 7..2226 1..2221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:04 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23130510..23130654 1113..1257 100 -> Plus
3L 23131189..23131354 1258..1419 97 -> Plus
3L 23126200..23126400 89..289 100 -> Plus
3L 23126717..23127251 290..824 99 -> Plus
3L 23127313..23127489 825..1001 100 -> Plus
3L 23128260..23128370 1002..1112 100 -> Plus
3L 23131408..23132208 1420..2221 99   Plus
3L 23126031..23126118 1..88 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:04 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23130510..23130654 1113..1257 100 -> Plus
3L 23131189..23131354 1258..1419 97 -> Plus
3L 23126200..23126400 89..289 100 -> Plus
3L 23126717..23127251 290..824 99 -> Plus
3L 23127313..23127489 825..1001 100 -> Plus
3L 23128260..23128370 1002..1112 100 -> Plus
3L 23131408..23132208 1420..2221 99   Plus
3L 23126031..23126118 1..88 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:04 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23130510..23130654 1113..1257 100 -> Plus
3L 23131189..23131354 1258..1419 97 -> Plus
3L 23126200..23126400 89..289 100 -> Plus
3L 23126717..23127251 290..824 99 -> Plus
3L 23127313..23127489 825..1001 100 -> Plus
3L 23128260..23128370 1002..1112 100 -> Plus
3L 23131408..23132208 1420..2221 99   Plus
3L 23126031..23126118 1..88 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:27:47 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23124289..23124454 1258..1419 97 -> Plus
arm_3L 23119131..23119218 1..88 100 -> Plus
arm_3L 23119300..23119500 89..289 100 -> Plus
arm_3L 23119817..23120351 290..824 99 -> Plus
arm_3L 23120413..23120589 825..1001 100 -> Plus
arm_3L 23121360..23121470 1002..1112 100 -> Plus
arm_3L 23123610..23123754 1113..1257 100 -> Plus
arm_3L 23124508..23125308 1420..2221 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:12:22 Download gff for RE15216.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23119817..23120351 290..824 99 -> Plus
3L 23120413..23120589 825..1001 100 -> Plus
3L 23121360..23121470 1002..1112 100 -> Plus
3L 23123610..23123754 1113..1257 100 -> Plus
3L 23124289..23124454 1258..1419 97 -> Plus
3L 23124508..23125308 1420..2221 99   Plus
3L 23119131..23119218 1..88 100 -> Plus
3L 23119300..23119500 89..289 100 -> Plus

RE15216.pep Sequence

Translation from 96 to 2195

> RE15216.pep
MDQFITSTLKNRRRRSLGLRLLICYLKKSDIKLEENVNTWTYLLVQSCKL
PELCSYGDLIFSAMALLLDKIQSDGNVSKVFASAHLSKVLECLSHNEIYK
HNRSTIAALHTIKKCLKYYPKGIKTKSSSIKNILVLLIDSQNDEVVYQSG
ECWFLLHKIHGISDKEHMDNKTEWKDFQLSLLSNIQYIINRTIVMPDESV
NSPFMPNHFGAFTFVAVKDPFERASKAFRRIFNLIEYIKIALSKQFVFKK
NICVHQILSLIQNGLNAHVNQQNVRINHAYLETFFPQMHIKLLELLEIVI
KTCHTHLRMDFRLVLNILMEALEKTNKSMLLESNLKEVLNMRLVVYRVIS
LWCSTLQEGSHCEIIADTLIKEVFDDILTRSPTTKKSVNAPYMKLSPETL
FSMLKCSLSNEDYRMLSQQAHSCLQQFLLSSGHLIKHQLLKAVHHTLLGI
CVQMHSQSSKEPDLWDIWDGRLEVYKSFTVLLKLRNYGCPTPSEIIWNLL
HESRLFNNNIALKQSHSSNLETMLHPQKADINFKSVDNLKKTIAFSTNKT
ENRHDLLQTIKSPEDQLCNNESPLISAIETIANNKDNQKNPGYDNNSLNK
KKPFEVVCKNDSKDLIAEDTPKNINEIPDGPLLSSKINSSESLQGQPLEI
LNGNNVNSNLISSCCSAEESVKMFPSNLEKLDDAKMIADLEATFVGELK*

RE15216.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16114-PA 725 GF16114-PA 1..725 1..699 1205 40.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16296-PA 712 GG16296-PA 1..711 1..698 2699 73.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22375-PA 391 GH22375-PA 1..385 3..386 647 37.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33217-PA 699 CG33217-PA 1..699 1..699 3619 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23627-PA 537 GI23627-PA 15..265 124..376 411 39.5 Plus
Dmoj\GI23627-PA 537 GI23627-PA 240..537 422..699 182 27.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19496-PA 51 GM19496-PA 1..47 1..47 144 89.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15066-PA 701 GD15066-PA 1..701 1..699 3159 87.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12173-PA 658 GK12173-PA 2..490 52..534 881 40.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22655-PA 697 GE22655-PA 1..696 1..698 2589 72.2 Plus

RE15216.hyp Sequence

Translation from 96 to 1471

> RE15216.hyp
MDQFITSTLKNRRRRSLGLRLLICYLKKSDIKLEENVNTWTYLLVQSCKL
PELCSYGDLIFSAMALLLDKIQSDGNVSKVFASAHLSKVLECLSHNEIYK
HNRSTIAALHTIKKCLKYYPKGIKTKSSSIKNILVLLIDSQNDEVVYQSG
ECWFLLHKIHGISDKEHMDNKTEWKDFQLSLLSNIQYIINRTIVMPDESV
NSPFMPNHFGAFTFVAVKDPFERASKAFRRIFNLIEYIKIALSKQFVFKK
NICVHQILSLIQNGLNAHVNQQNVRINHAYLETFFPQMHIKLLELLEIVI
KTCHTHLRMDFRLVLNILMEALEKTNKSMLLESNLKEVLNMRLVVYRVIS
LWCSTLQEGSHCEIIADTLIKEVFDDILTRSPTTKKSVNAPYMKLSPETL
FSMLKCSLSNEDYRMLSQQAHSCLQQFLLSSGHLIKHQLLKESGAPHLIG
NLCSNAFSV*

RE15216.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33217-PA 699 CG33217-PA 1..451 1..453 2271 97.8 Plus