Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE15216.complete Sequence
2237 bp (2237 high quality bases) assembled on 2002-05-17
GenBank Submission: AY119114
> RE15216.complete
ACACTAATTTGATAACAGCGTCAACCACATGTCGGCTTTATTTATAATGT
TGGAATCGAAATAAGTTAGGAAAGTGTGATTCAGTTTGATATCAGTATGG
ATCAATTCATAACTTCGACTTTGAAAAACCGTAGACGACGTTCTCTTGGA
TTGCGACTCTTAATATGTTACCTTAAAAAAAGTGACATTAAATTAGAGGA
AAATGTTAATACATGGACATATTTATTAGTTCAATCATGCAAATTACCTG
AGTTGTGTTCATATGGTGATTTAATATTTTCCGCTATGGCACTCCTTCTG
GACAAAATCCAGAGTGACGGTAATGTGTCAAAAGTATTCGCATCTGCTCA
TTTATCTAAAGTACTGGAATGCTTATCTCACAACGAAATATATAAGCACA
ATCGCTCAACTATTGCTGCCTTACACACAATCAAGAAATGCCTAAAATAT
TACCCAAAAGGAATAAAAACTAAATCATCAAGTATCAAAAATATATTAGT
ACTATTAATTGACAGCCAAAACGATGAAGTTGTTTATCAATCTGGTGAAT
GTTGGTTTTTGTTACACAAAATTCATGGCATTTCCGATAAAGAACATATG
GATAATAAAACTGAATGGAAGGATTTTCAATTATCTTTACTGAGTAATAT
CCAATATATTATAAATAGAACAATAGTTATGCCTGACGAATCCGTTAACA
GCCCTTTTATGCCAAATCATTTTGGAGCTTTCACTTTTGTAGCTGTAAAA
GATCCTTTTGAAAGGGCTTCAAAAGCTTTTCGACGGATTTTTAATCTTAT
TGAATATATCAAAATTGCTTTAAGCAAACAATTTGTTTTCAAAAAGAATA
TTTGCGTACATCAAATCTTGTCTTTAATACAAAATGGACTAAATGCACAC
GTAAACCAACAAAATGTACGAATTAATCATGCATATCTTGAGACATTTTT
TCCGCAAATGCACATAAAATTATTGGAGCTTTTGGAAATTGTCATTAAAA
CATGTCATACACACCTAAGGATGGACTTTCGGCTTGTTCTAAATATTTTA
ATGGAAGCCCTTGAAAAAACAAACAAATCAATGTTACTAGAATCAAATTT
AAAGGAAGTTTTGAATATGCGCCTAGTTGTGTACAGAGTAATATCTTTAT
GGTGCTCTACTCTACAAGAAGGAAGCCATTGCGAAATTATTGCGGATACT
CTTATCAAAGAAGTGTTTGATGATATATTAACGCGAAGCCCAACTACTAA
AAAAAGTGTAAACGCACCATACATGAAACTTTCACCTGAAACTCTATTTT
CGATGTTGAAATGTTCATTAAGTAATGAAGACTATCGTATGCTTAGTCAA
CAAGCACACTCTTGCCTACAACAGTTTTTGTTATCTTCTGGTCATTTGAT
AAAGCATCAACTTTTAAAGGCGGTGCACCACACCTTATTGGGAATTTGTG
TTCAAATGCATTCTCAGTCTAGCAAAGAACCAGACTTGTGGGATATTTGG
GACGGGCGCTTGGAAGTTTATAAGTCTTTCACAGTTCTATTGAAATTACG
AAACTATGGATGTCCTACGCCTTCTGAAATAATTTGGAATCTTTTGCACG
AATCCCGATTATTTAATAATAACATTGCACTTAAGCAAAGTCATAGTTCT
AACTTGGAAACGATGCTTCATCCTCAAAAGGCGGATATTAACTTTAAAAG
TGTTGACAATTTAAAGAAAACAATCGCCTTTTCAACAAATAAAACGGAAA
ATAGACACGATTTGTTACAAACTATCAAGAGTCCCGAAGACCAATTATGT
AATAATGAAAGTCCACTGATATCGGCCATTGAAACCATTGCAAATAATAA
GGATAATCAAAAAAACCCTGGCTACGACAATAATTCGTTGAATAAAAAGA
AACCTTTTGAAGTAGTTTGTAAAAATGACTCAAAAGATTTAATTGCTGAA
GATACACCAAAAAATATTAATGAGATACCAGATGGCCCTTTGCTCTCATC
AAAAATCAACAGTTCAGAGAGTTTACAAGGACAACCCCTAGAAATTTTGA
ATGGCAATAATGTGAACTCTAATTTAATATCATCCTGTTGCAGTGCTGAA
GAATCTGTAAAAATGTTTCCTTCGAACTTGGAAAAATTAGATGATGCTAA
AATGATAGCCGACTTGGAAGCAACATTCGTTGGTGAACTTAAATAAAAAT
AAAAACTAGTTTGGTGTGCCTAAAAAAAAAAAAAAAA
RE15216.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33217.a | 2754 | CG33217.a | 35..2257 | 1..2223 | 11085 | 99.9 | Plus |
CG33217-RA | 2255 | CG33217-RA | 35..2253 | 1..2219 | 11080 | 99.9 | Plus |
CG41454-RA | 930 | CG41454-RA | 1..727 | 1456..2182 | 3635 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 23120333..23121138 | 1414..2219 | 4015 | 99.9 | Plus |
chr3L | 24539361 | chr3L | 23126434..23127239 | 1414..2219 | 4015 | 99.9 | Plus |
chr3L | 24539361 | chr3L | 23115647..23116182 | 289..824 | 2665 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 23115130..23115331 | 88..289 | 1010 | 100 | Plus |
chr3L | 24539361 | chr3L | 23116238..23116420 | 819..1001 | 900 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 23120120..23120282 | 1258..1420 | 815 | 100 | Plus |
chr3L | 24539361 | chr3L | 23126221..23126383 | 1258..1420 | 815 | 100 | Plus |
chr3L | 24539361 | chr3L | 23125542..23125691 | 1113..1262 | 750 | 100 | Plus |
chr3L | 24539361 | chr3L | 23119441..23119590 | 1113..1262 | 750 | 100 | Plus |
chr3L | 24539361 | chr3L | 23117191..23117302 | 1002..1113 | 560 | 100 | Plus |
chr3L | 24539361 | chr3L | 23114962..23115053 | 1..92 | 445 | 98.9 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:36:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23131402..23132211 | 1414..2223 | 4020 | 99.8 | Plus |
3L | 28110227 | 3L | 23137503..23138312 | 1414..2223 | 4020 | 99.8 | Plus |
3L | 28110227 | 3L | 23126716..23127251 | 289..824 | 2665 | 99.8 | Plus |
3L | 28110227 | 3L | 23126199..23126400 | 88..289 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 23127307..23127489 | 819..1001 | 900 | 99.5 | Plus |
3L | 28110227 | 3L | 23131189..23131351 | 1258..1420 | 815 | 100 | Plus |
3L | 28110227 | 3L | 23137290..23137452 | 1258..1420 | 815 | 100 | Plus |
3L | 28110227 | 3L | 23136611..23136760 | 1113..1262 | 750 | 100 | Plus |
3L | 28110227 | 3L | 23130510..23130659 | 1113..1262 | 750 | 100 | Plus |
3L | 28110227 | 3L | 23128260..23128371 | 1002..1113 | 560 | 100 | Plus |
3L | 28110227 | 3L | 23126031..23126122 | 1..92 | 445 | 98.9 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 23130603..23131412 | 1414..2223 | 4020 | 99.7 | Plus |
3L | 28103327 | 3L | 23124502..23125311 | 1414..2223 | 4020 | 99.7 | Plus |
3L | 28103327 | 3L | 23119816..23120351 | 289..824 | 2665 | 99.8 | Plus |
3L | 28103327 | 3L | 23119299..23119500 | 88..289 | 1010 | 100 | Plus |
3L | 28103327 | 3L | 23120407..23120589 | 819..1001 | 900 | 99.4 | Plus |
3L | 28103327 | 3L | 23130390..23130552 | 1258..1420 | 815 | 100 | Plus |
3L | 28103327 | 3L | 23124289..23124451 | 1258..1420 | 815 | 100 | Plus |
3L | 28103327 | 3L | 23129711..23129860 | 1113..1262 | 750 | 100 | Plus |
3L | 28103327 | 3L | 23123610..23123759 | 1113..1262 | 750 | 100 | Plus |
3L | 28103327 | 3L | 23121360..23121471 | 1002..1113 | 560 | 100 | Plus |
3L | 28103327 | 3L | 23119131..23119222 | 1..92 | 445 | 98.9 | Plus |
Blast to na_te.dros performed 2019-03-15 22:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 2905..2960 | 987..933 | 133 | 73.2 | Minus |
RE15216.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:39:04 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 23114962..23115049 | 1..88 | 100 | -> | Plus |
chr3L | 23115131..23115331 | 89..289 | 100 | -> | Plus |
chr3L | 23115648..23116182 | 290..824 | 99 | -> | Plus |
chr3L | 23116244..23116420 | 825..1001 | 100 | -> | Plus |
chr3L | 23117191..23117301 | 1002..1112 | 100 | -> | Plus |
chr3L | 23119441..23119585 | 1113..1257 | 100 | -> | Plus |
chr3L | 23120120..23120285 | 1258..1419 | 97 | -> | Plus |
chr3L | 23120339..23121139 | 1420..2221 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:47:38 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 1..2100 | 97..2196 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:27:47 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 1..2100 | 97..2196 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:40:50 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 1..2100 | 97..2196 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:44 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 1..2100 | 97..2196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:24:49 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 1..2220 | 1..2221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:47:38 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 1..2220 | 1..2221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:27:47 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 7..2226 | 1..2221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:40:50 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 1..2220 | 1..2221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:44 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 7..2226 | 1..2221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:04 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23130510..23130654 | 1113..1257 | 100 | -> | Plus |
3L | 23131189..23131354 | 1258..1419 | 97 | -> | Plus |
3L | 23126200..23126400 | 89..289 | 100 | -> | Plus |
3L | 23126717..23127251 | 290..824 | 99 | -> | Plus |
3L | 23127313..23127489 | 825..1001 | 100 | -> | Plus |
3L | 23128260..23128370 | 1002..1112 | 100 | -> | Plus |
3L | 23131408..23132208 | 1420..2221 | 99 | | Plus |
3L | 23126031..23126118 | 1..88 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:04 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23130510..23130654 | 1113..1257 | 100 | -> | Plus |
3L | 23131189..23131354 | 1258..1419 | 97 | -> | Plus |
3L | 23126200..23126400 | 89..289 | 100 | -> | Plus |
3L | 23126717..23127251 | 290..824 | 99 | -> | Plus |
3L | 23127313..23127489 | 825..1001 | 100 | -> | Plus |
3L | 23128260..23128370 | 1002..1112 | 100 | -> | Plus |
3L | 23131408..23132208 | 1420..2221 | 99 | | Plus |
3L | 23126031..23126118 | 1..88 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:04 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23130510..23130654 | 1113..1257 | 100 | -> | Plus |
3L | 23131189..23131354 | 1258..1419 | 97 | -> | Plus |
3L | 23126200..23126400 | 89..289 | 100 | -> | Plus |
3L | 23126717..23127251 | 290..824 | 99 | -> | Plus |
3L | 23127313..23127489 | 825..1001 | 100 | -> | Plus |
3L | 23128260..23128370 | 1002..1112 | 100 | -> | Plus |
3L | 23131408..23132208 | 1420..2221 | 99 | | Plus |
3L | 23126031..23126118 | 1..88 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:27:47 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23124289..23124454 | 1258..1419 | 97 | -> | Plus |
arm_3L | 23119131..23119218 | 1..88 | 100 | -> | Plus |
arm_3L | 23119300..23119500 | 89..289 | 100 | -> | Plus |
arm_3L | 23119817..23120351 | 290..824 | 99 | -> | Plus |
arm_3L | 23120413..23120589 | 825..1001 | 100 | -> | Plus |
arm_3L | 23121360..23121470 | 1002..1112 | 100 | -> | Plus |
arm_3L | 23123610..23123754 | 1113..1257 | 100 | -> | Plus |
arm_3L | 23124508..23125308 | 1420..2221 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:12:22 Download gff for
RE15216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23119817..23120351 | 290..824 | 99 | -> | Plus |
3L | 23120413..23120589 | 825..1001 | 100 | -> | Plus |
3L | 23121360..23121470 | 1002..1112 | 100 | -> | Plus |
3L | 23123610..23123754 | 1113..1257 | 100 | -> | Plus |
3L | 23124289..23124454 | 1258..1419 | 97 | -> | Plus |
3L | 23124508..23125308 | 1420..2221 | 99 | | Plus |
3L | 23119131..23119218 | 1..88 | 100 | -> | Plus |
3L | 23119300..23119500 | 89..289 | 100 | -> | Plus |
RE15216.pep Sequence
Translation from 96 to 2195
> RE15216.pep
MDQFITSTLKNRRRRSLGLRLLICYLKKSDIKLEENVNTWTYLLVQSCKL
PELCSYGDLIFSAMALLLDKIQSDGNVSKVFASAHLSKVLECLSHNEIYK
HNRSTIAALHTIKKCLKYYPKGIKTKSSSIKNILVLLIDSQNDEVVYQSG
ECWFLLHKIHGISDKEHMDNKTEWKDFQLSLLSNIQYIINRTIVMPDESV
NSPFMPNHFGAFTFVAVKDPFERASKAFRRIFNLIEYIKIALSKQFVFKK
NICVHQILSLIQNGLNAHVNQQNVRINHAYLETFFPQMHIKLLELLEIVI
KTCHTHLRMDFRLVLNILMEALEKTNKSMLLESNLKEVLNMRLVVYRVIS
LWCSTLQEGSHCEIIADTLIKEVFDDILTRSPTTKKSVNAPYMKLSPETL
FSMLKCSLSNEDYRMLSQQAHSCLQQFLLSSGHLIKHQLLKAVHHTLLGI
CVQMHSQSSKEPDLWDIWDGRLEVYKSFTVLLKLRNYGCPTPSEIIWNLL
HESRLFNNNIALKQSHSSNLETMLHPQKADINFKSVDNLKKTIAFSTNKT
ENRHDLLQTIKSPEDQLCNNESPLISAIETIANNKDNQKNPGYDNNSLNK
KKPFEVVCKNDSKDLIAEDTPKNINEIPDGPLLSSKINSSESLQGQPLEI
LNGNNVNSNLISSCCSAEESVKMFPSNLEKLDDAKMIADLEATFVGELK*
RE15216.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF16114-PA | 725 | GF16114-PA | 1..725 | 1..699 | 1205 | 40.2 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG16296-PA | 712 | GG16296-PA | 1..711 | 1..698 | 2699 | 73.6 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH22375-PA | 391 | GH22375-PA | 1..385 | 3..386 | 647 | 37.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33217-PA | 699 | CG33217-PA | 1..699 | 1..699 | 3619 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:22:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI23627-PA | 537 | GI23627-PA | 15..265 | 124..376 | 411 | 39.5 | Plus |
Dmoj\GI23627-PA | 537 | GI23627-PA | 240..537 | 422..699 | 182 | 27.7 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19496-PA | 51 | GM19496-PA | 1..47 | 1..47 | 144 | 89.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD15066-PA | 701 | GD15066-PA | 1..701 | 1..699 | 3159 | 87.3 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK12173-PA | 658 | GK12173-PA | 2..490 | 52..534 | 881 | 40.4 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22655-PA | 697 | GE22655-PA | 1..696 | 1..698 | 2589 | 72.2 | Plus |
RE15216.hyp Sequence
Translation from 96 to 1471
> RE15216.hyp
MDQFITSTLKNRRRRSLGLRLLICYLKKSDIKLEENVNTWTYLLVQSCKL
PELCSYGDLIFSAMALLLDKIQSDGNVSKVFASAHLSKVLECLSHNEIYK
HNRSTIAALHTIKKCLKYYPKGIKTKSSSIKNILVLLIDSQNDEVVYQSG
ECWFLLHKIHGISDKEHMDNKTEWKDFQLSLLSNIQYIINRTIVMPDESV
NSPFMPNHFGAFTFVAVKDPFERASKAFRRIFNLIEYIKIALSKQFVFKK
NICVHQILSLIQNGLNAHVNQQNVRINHAYLETFFPQMHIKLLELLEIVI
KTCHTHLRMDFRLVLNILMEALEKTNKSMLLESNLKEVLNMRLVVYRVIS
LWCSTLQEGSHCEIIADTLIKEVFDDILTRSPTTKKSVNAPYMKLSPETL
FSMLKCSLSNEDYRMLSQQAHSCLQQFLLSSGHLIKHQLLKESGAPHLIG
NLCSNAFSV*
RE15216.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33217-PA | 699 | CG33217-PA | 1..451 | 1..453 | 2271 | 97.8 | Plus |