BDGP Sequence Production Resources |
Search the DGRC for RE15281
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 152 |
Well: | 81 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Papss-RD |
Protein status: | RE15281.pep: gold |
Sequenced Size: | 2476 |
Gene | Date | Evidence |
---|---|---|
Papss-RD | 2009-06-22 | Replacement based on scoring |
2476 bp assembled on 2009-10-01
GenBank Submission: BT099934.1
> RE15281.complete GGGTGCAGTTTGGAGCTTCGGCGAGAAAGTTCAGCGTTTTCGGCGGTTGG TTAACTTGGCTTTTCAACTGCGGAACTCTCACTTGTTTAATTATCAAAGA GCGCACATTGTCCGATTCCCGCTTTCTTTTCACCTGCCCAACGTTTCGTT TCGTTTTTGTTGGAAAATGTTTACCCGATGTGCCAATTCGCTTGGCCTCT ACCATAATAATATTAACAATAACAACAGCGCTTGCTGTGCCGCTTCCCCG AAAAGAAGCTGCCTTCCGAGTGTGGAAAAGCCTGAAGATGCGTGCCTACA GGTGGCGACGAATGTGACCGAGCAAAAGCACCATGTCACCAGGGAGACGC GCGGCAAGAATTTGGGACTCTGTCGAGGATTCCGAGGATGCACGGTGTGG CTGACTGGCCTCAGTGGAGCTGGAAAGACCTCGATTGCCTTCGAACTGGA GGCGTACCTGGTATCCCGGGGCATTCCGGCCTACGGGTTGGACGGCGACA ACATTCGCACCGGACTGAACAAGAACCTGGGCTTCACGCCCGCCGATCGC GAGGAAAACATTCGCCGCGTGGGCGAGGTGGCCAAGTTGTTTGCCGACAG CGGAGTGGTGGCCATCTGCAGCTTCGTTTCGCCCTTCGCCGACGATCGTG AGATGGCGCGCAAGATCCACAAGGATGCGGGTCTGAAGTTCTATGAGATA TTCGTGGACACACCGCTGGATGTGTGCGAAACCCGGGACGTGAAGGGTCT ATACAAGAAGGCGCGCGAGGGCGTAATCAAAGGATTCACGGGCATTACGC AGGAGTACGAGCGACCCCAGATGCCGGAGCTGGTGGTCAACACGCACGGC TACACGGTGCGCGAGTCCACTCAGAAGCTGGTGACGCTGCTCGAACAGGA GGGCATTATTCCGCGCTCGCTGCGCGACGTAGACCTGCTGCCGGAGCTTT ATCCCAGCGAATCCATTGCCACGGAGGCACTGCGTCACGAGGCCGAGTCG CTGCAAGCCATCGAAATCAGCACCGTGGAGCTGCAGTGGGTGCAAGTACT GGCCGAGGGATGGGCATATCCACTGCGCGGCTTCATGCGCGAGGATGAGT ACCTGCAGACGCTGCACTTCAACACACTTCAGAGCGGCATGGACGGTTCC TATCGCGAGAACCACTCGGTGCCCATTGTTTTGAGCGCCACGCAGGCGGA CAAGGATCGTCTGGACGGCTGCTCCTCGCTGACTCTCAAATACCAAGGCA AGGCGGTAGCCATTCTGCGGCGTCCCGAGTTCTACTTTCAGCGTAAGGAG GAGCGGCTGGCCCGCCAGTTCGGCACCAGCAATCCCAATCACCCGTACAG TAAGCAGGTCTACGAGTCCGGGGATTATTTGGTCGGTGGCGATCTGGCAG TGATCGAACGTATCCGCTGGGAGGACGGACTGGATCAGTACAGGCTGACT CCCAACGAGTTAAGGCGCCGCTTTAAGGAGCTGAATGCCGACGCCATCTT CGCCTTTCAGTTGCGCAATCCCATCCACAACGGCCATGCCCTGCTCATGC AAGACACTCGCCGCCAGCTGCTGGAGCGCGGCTTCAAGCAGCCAGTGCTG CTGCTGCATCCTCTGGGTGGCTGGACCAAGGACGACGATGTGCCGCTGGA TGTGCGCATGAAGCAGCACCAGGCCGTGCTCGACGCAGGTGTCTTGCGAC GAGAGGACACAGTGCTGGCCATCTTCCCCTCGCCAATGATGTACGCCGGT CCCACGGAGGTGCAGTGGCACGCAAAGGCGCGCATGAACGCCGGTGCGAA CTTCTACATTGTAGGCCGTGATCCGGCTGGCATGCCGCATCCGGCCAAGG AAACTTATCCGGATGGAAACCTATACGATGCCACCCATGGCGCGCGAGTG CTTAAGATGGCCCAGGGACTAGACAGCATGGAGATCCTGCCCTTCCGTGT TGCTGCCTATGACAAGAGCGCCAGTAGAATGGCCTTCTTCGAGCCCAAGA GGAAGGATGAGTTTGAGTTCATCTCGGGAACCAAGATGCGCACCCTGGCC AAAACGGGAGCCAGTCCGCCGGATGGCTTCATGGAACCGGAGGCTTGGCG CATCCTGGCCACCTACTACCAGAACCTGCCGCAGTCGTAACCCGCTGCTC ACACTCGATCCGCAACGTGCAATTCCTCCTAGTTATAGCTCGTGTGCTTA TTATACATAAATATTTCAAGCTAAAGGCGCTTACCACTTACCACATCTTT TTTCCATTGTTCTAAGCCGAAATCCGTGGCTGTCCCCGTGTGTGAATGTT GTGCTCCTCCTAACTAAATGTTCGTATCGTACAATCTACTTGTATCTACA CTTAAGTCACCCAATTCTTTTTATCTTAAGCAAAATATCGTGCAGCTATT TTGTGGACGGTTTTTAATACATATATAAATAATAAAATAGAAAATTACTT ATTGAAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Papss-RD | 2578 | Papss-RD | 124..2576 | 4..2456 | 12250 | 99.9 | Plus |
Papss.e | 2675 | Papss.e | 509..2673 | 292..2456 | 10810 | 99.9 | Plus |
Papss.a | 2464 | Papss.a | 298..2462 | 292..2456 | 10810 | 99.9 | Plus |
Papss.e | 2675 | Papss.e | 1..281 | 13..293 | 1405 | 100 | Plus |
Papss.a | 2464 | Papss.a | 1..70 | 224..293 | 350 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 19848178..19849704 | 407..1933 | 7575 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 19849765..19850289 | 1932..2456 | 2625 | 100 | Plus |
chr3L | 24539361 | chr3L | 19836678..19836966 | 4..292 | 1430 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 19847741..19847857 | 292..408 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 19858814..19860340 | 407..1933 | 7620 | 99.9 | Plus |
3L | 28110227 | 3L | 19860403..19860927 | 1932..2456 | 2625 | 100 | Plus |
3L | 28110227 | 3L | 19847315..19847603 | 4..292 | 1445 | 100 | Plus |
3L | 28110227 | 3L | 19858377..19858493 | 292..408 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 19851914..19853440 | 407..1933 | 7620 | 99.9 | Plus |
3L | 28103327 | 3L | 19853503..19854027 | 1932..2456 | 2625 | 100 | Plus |
3L | 28103327 | 3L | 19840415..19840703 | 4..292 | 1445 | 100 | Plus |
3L | 28103327 | 3L | 19851477..19851593 | 292..408 | 585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 19847742..19847856 | 293..407 | 100 | -> | Plus |
chr3L | 19836675..19836966 | 1..292 | 98 | -> | Plus |
chr3L | 19848179..19849704 | 408..1933 | 99 | -> | Plus |
chr3L | 19849767..19850242 | 1934..2409 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RD | 1..1974 | 167..2140 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RD | 1..1974 | 167..2140 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RD | 1..1974 | 167..2140 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RD | 1..1974 | 167..2140 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RD | 2..2455 | 1..2454 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RD | 2..2455 | 1..2454 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RD | 4..2457 | 1..2454 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Papss-RD | 4..2457 | 1..2454 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19847312..19847603 | 1..292 | 99 | -> | Plus |
3L | 19858378..19858492 | 293..407 | 100 | -> | Plus |
3L | 19858815..19860340 | 408..1933 | 99 | -> | Plus |
3L | 19860405..19860930 | 1934..2460 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19847312..19847603 | 1..292 | 99 | -> | Plus |
3L | 19858378..19858492 | 293..407 | 100 | -> | Plus |
3L | 19858815..19860340 | 408..1933 | 99 | -> | Plus |
3L | 19860405..19860930 | 1934..2460 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19847312..19847603 | 1..292 | 99 | -> | Plus |
3L | 19858378..19858492 | 293..407 | 100 | -> | Plus |
3L | 19858815..19860340 | 408..1933 | 99 | -> | Plus |
3L | 19860405..19860930 | 1934..2460 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 19840412..19840703 | 1..292 | 99 | -> | Plus |
arm_3L | 19851478..19851592 | 293..407 | 100 | -> | Plus |
arm_3L | 19851915..19853440 | 408..1933 | 99 | -> | Plus |
arm_3L | 19853505..19854030 | 1934..2460 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19840412..19840703 | 1..292 | 99 | -> | Plus |
3L | 19851478..19851592 | 293..407 | 100 | -> | Plus |
3L | 19851915..19853440 | 408..1933 | 99 | -> | Plus |
3L | 19853505..19854030 | 1934..2460 | 99 | Plus |
Translation from 0 to 2139
> RE15281.hyp VAVWSFGEKVQRFRRLVNLAFQLRNSHLFNYQRAHIVRFPLSFHLPNVSF RFCWKMFTRCANSLGLYHNNINNNNSACCAASPKRSCLPSVEKPEDACLQ VATNVTEQKHHVTRETRGKNLGLCRGFRGCTVWLTGLSGAGKTSIAFELE AYLVSRGIPAYGLDGDNIRTGLNKNLGFTPADREENIRRVGEVAKLFADS GVVAICSFVSPFADDREMARKIHKDAGLKFYEIFVDTPLDVCETRDVKGL YKKAREGVIKGFTGITQEYERPQMPELVVNTHGYTVRESTQKLVTLLEQE GIIPRSLRDVDLLPELYPSESIATEALRHEAESLQAIEISTVELQWVQVL AEGWAYPLRGFMREDEYLQTLHFNTLQSGMDGSYRENHSVPIVLSATQAD KDRLDGCSSLTLKYQGKAVAILRRPEFYFQRKEERLARQFGTSNPNHPYS KQVYESGDYLVGGDLAVIERIRWEDGLDQYRLTPNELRRRFKELNADAIF AFQLRNPIHNGHALLMQDTRRQLLERGFKQPVLLLHPLGGWTKDDDVPLD VRMKQHQAVLDAGVLRREDTVLAIFPSPMMYAGPTEVQWHAKARMNAGAN FYIVGRDPAGMPHPAKETYPDGNLYDATHGARVLKMAQGLDSMEILPFRV AAYDKSASRMAFFEPKRKDEFEFISGTKMRTLAKTGASPPDGFMEPEAWR ILATYYQNLPQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Papss-PD | 657 | CG8363-PD | 1..657 | 56..712 | 3453 | 100 | Plus |
Papss-PG | 629 | CG8363-PG | 7..629 | 90..712 | 3228 | 99 | Plus |
Papss-PB | 629 | CG8363-PB | 7..629 | 90..712 | 3228 | 99 | Plus |
Papss-PA | 629 | CG8363-PA | 7..629 | 90..712 | 3228 | 99 | Plus |
Papss-PC | 629 | CG8363-PC | 7..629 | 90..712 | 3228 | 99 | Plus |
Translation from 1 to 2139
> RE15281.pep GAVWSFGEKVQRFRRLVNLAFQLRNSHLFNYQRAHIVRFPLSFHLPNVSF RFCWKMFTRCANSLGLYHNNINNNNSACCAASPKRSCLPSVEKPEDACLQ VATNVTEQKHHVTRETRGKNLGLCRGFRGCTVWLTGLSGAGKTSIAFELE AYLVSRGIPAYGLDGDNIRTGLNKNLGFTPADREENIRRVGEVAKLFADS GVVAICSFVSPFADDREMARKIHKDAGLKFYEIFVDTPLDVCETRDVKGL YKKAREGVIKGFTGITQEYERPQMPELVVNTHGYTVRESTQKLVTLLEQE GIIPRSLRDVDLLPELYPSESIATEALRHEAESLQAIEISTVELQWVQVL AEGWAYPLRGFMREDEYLQTLHFNTLQSGMDGSYRENHSVPIVLSATQAD KDRLDGCSSLTLKYQGKAVAILRRPEFYFQRKEERLARQFGTSNPNHPYS KQVYESGDYLVGGDLAVIERIRWEDGLDQYRLTPNELRRRFKELNADAIF AFQLRNPIHNGHALLMQDTRRQLLERGFKQPVLLLHPLGGWTKDDDVPLD VRMKQHQAVLDAGVLRREDTVLAIFPSPMMYAGPTEVQWHAKARMNAGAN FYIVGRDPAGMPHPAKETYPDGNLYDATHGARVLKMAQGLDSMEILPFRV AAYDKSASRMAFFEPKRKDEFEFISGTKMRTLAKTGASPPDGFMEPEAWR ILATYYQNLPQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23598-PA | 629 | GF23598-PA | 7..629 | 90..712 | 3226 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16064-PA | 629 | GG16064-PA | 7..628 | 90..711 | 3281 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14663-PA | 629 | GH14663-PA | 9..629 | 92..712 | 3063 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Papss-PD | 657 | CG8363-PD | 1..657 | 56..712 | 3453 | 100 | Plus |
Papss-PG | 629 | CG8363-PG | 7..629 | 90..712 | 3228 | 99 | Plus |
Papss-PB | 629 | CG8363-PB | 7..629 | 90..712 | 3228 | 99 | Plus |
Papss-PA | 629 | CG8363-PA | 7..629 | 90..712 | 3228 | 99 | Plus |
Papss-PC | 629 | CG8363-PC | 7..629 | 90..712 | 3228 | 99 | Plus |
Papss-PH | 630 | CG8363-PH | 16..630 | 98..712 | 3221 | 100 | Plus |
Papss-PF | 630 | CG8363-PF | 16..630 | 98..712 | 3221 | 100 | Plus |
Papss-PE | 630 | CG8363-PE | 16..630 | 98..712 | 3221 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11647-PA | 629 | GI11647-PA | 9..629 | 92..712 | 3057 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15741-PA | 625 | GL15741-PA | 9..625 | 92..712 | 3045 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21020-PA | 629 | GA21020-PA | 7..629 | 90..712 | 3124 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19669-PA | 533 | GM19669-PA | 94..487 | 99..492 | 2088 | 99.5 | Plus |
Dsec\GM19674-PA | 77 | GM19674-PA | 1..77 | 636..712 | 410 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14833-PA | 595 | GD14833-PA | 7..595 | 90..712 | 3073 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11328-PA | 630 | GJ11328-PA | 16..630 | 98..712 | 3059 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16974-PA | 658 | GK16974-PA | 1..658 | 56..712 | 3157 | 89.5 | Plus |