Clone RE15313 Report

Search the DGRC for RE15313

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:153
Well:13
Vector:pFlc-1
Associated Gene/TranscriptCG31559-RA
Protein status:RE15313.pep: gold
Preliminary Size:1023
Sequenced Size:2011

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31559 2001-12-14 Blastp of sequenced clone
CG15584 2002-01-01 Sim4 clustering to Release 2
CG31559 2003-01-01 Sim4 clustering to Release 3
CG31559 2008-04-29 Release 5.5 accounting
CG31559 2008-08-15 Release 5.9 accounting
CG31559 2008-12-18 5.12 accounting

Clone Sequence Records

RE15313.complete Sequence

2011 bp (2011 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071086

> RE15313.complete
AGTCTAGCGACGATATCTGAAGCATAAAGACATGCGACGTCTCGGGTGCA
ACGTCCGTCAGAGTCATTGAACGCTTGCATTTTCCTGGGCCAATCCGATA
AAAGCCAATACTGTACAGTGCCAGCCGAAAGACGGCTTACTCCGCAGACT
CTAGATAGCCAGATAAGTGATATGGTGCTGGCCACGCCCCCTGTGAGCAA
GGGCGGTAACGCGGGCGGCCTCTTCATGGACCAGTATCAGCAGTACGCGG
CCCACTGTGAAACCGCCGACAGTGGCAATGGCAGTGACCTGGAGAGCACC
GGATTGCCCACCAAACCGGATGACAGCGAGGAGAGTGGCCCCTCCTCGCT
GGGCAGCGACTCCATGCACGGGAGCAGCACGGAGTACGTGCGACAGTCCG
CCTCCCAGCCCAGTGGCCAGCGGCAGCGACAGAAGTCCTTGCGGGTCCTG
GGTGCCCTGCTCCCCGACAGCCTGCTCCGCGACATACGGGACCGGAGGAG
CACCGAGTATGTGGTACAGTTCTCGCAGCCAGAGGATGAGGAGAAGATCC
AGGTCCCCGACAAGATTCCGGAGAAACCCAGTCCGTTCCGCCTGGCCCGC
GAATCGCTGAGCGAGGACAAAATAGAGGAGCTGCGGGCCGCAGTGGAGCG
GGCCAACTTCGTTCAAACCGGTGAGGAGACGCTGGACAGCATCGATGCCA
CATCGCAGTCTCTTCCAGCCAGCAGCAACATCGGCGGACACCGCGGCAAT
ATCAATTACAAGTATGCTGACGACCAATACTACAGCTTTCACATCAACGA
GCACGAGAACTTCGGTGCGAGAAGCGCGAGAAGTGGCGACGAGGCGGACC
ACTCCACGGGAGCGGGATCGGAGGCTGGCTCCGACAGCGGGATCCTAACG
GAGCAGCAAGACCTCTTCGCCGGCTATCGGGACGTGCGATGTGGGGCCAG
TTCCACCCAGTCCACTATCCGATCGGCCAAGGGAACGGTGCGGGGCGTCA
AGAACCGTGTGCGCAATGGAATAGCCACGTTCTTGCAGCTCCAGCAGCAG
CCCAATGCCAAGAACTTCAAGGAGAAAGACCTGGGCAAGGTGGTGCTGTA
CACCACCAGCATGGGCATCATCCGGGAAACCTACACGAAGTGTGCCAACG
TCAAGCAGATCCTGCGCACCCTGCTGGTCAAGTTTGAGGAGCGGGACGTC
TTCATGAGCGTGGAGTACCAGGCGGAGATGCGCCAGCGGATGCAGAGCGG
TCAGGTGCGGGTGCCACAGCTGTACGTCGAGGGCCAGCACATCGGGGACG
CCGAGACCGTGGAGCGGATGAACGAGTCCGGCGAGCTGAGGCAGCTGCTC
AAACCGTACAAGTCCATGGCCAGCACCTACACCTGCCAGACCTGCGGCGG
CTACCGCCTGCTGCCCTGCCCCTCCTGCAACGGGTCCAAGAAGTCCGTGC
ACCGCAACCACTTCACTGCCGAGTTCGTGGCCCTCAAGTGCATGAACTGC
GACGAGGTGGGCCTGGTCAAGTGCCACAATTGCTGAGTCGCAGTCCGAGT
CCCAGTTCTAGAATTCGTAAGCCCAGTTAGTCTAAGCCGCTAAAATCCAA
TACTCTCGGAATATGCTAGGCTTAAGTAGTAAATAGCTAATCCGTACCAG
GGTCTGTGTTTTCATTTTCGAGGAAATAGTGGGGGTAAATTTACGTACTA
GCAAGTTTCAGCGAAAATTTGGGATAAGTACTTTGCTAAAATATTTAATC
TTTAATTAATTTGCTTAGACGCATTAAGTTTTCTGCTAACTCCTGCTAAT
GTGTCAAAAAATCATCTTTATAAAGAGGTAAGTTATACAATAGGTAAATT
TTAGGTCAATAAATGTTTGTTTAATCGGTGAATCCCAATGAGAACATTTA
AGTTTTGAATAATTATGTATAAGTTCGTCAATTTTAAGCTAATACAACAA
TCAAAACCAACAAGAATTTAGAAATAAATATAAAGTCAACCAAGGAAAAA
AAAAAAAAAAA

RE15313.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31559-RA 2130 CG31559-RA 104..2099 1..1996 9980 100 Plus
CG31559.a 2482 CG31559.a 456..2451 1..1996 9980 100 Plus
CG12206-RA 2412 CG12206-RA 1554..1824 972..1245 610 82.1 Plus
CG12206-RA 2412 CG12206-RA 1837..2116 1258..1537 470 77.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1981820..1982888 1062..1 5205 99.3 Minus
chr3R 27901430 chr3R 1975782..1976722 1995..1061 4580 99.4 Minus
chrX 22417052 chrX 3359907..3360143 1297..1061 435 78.9 Minus
chrX 22417052 chrX 3359542..3359695 1537..1384 350 81.8 Minus
chrX 22417052 chrX 3365406..3365482 1048..972 250 88.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6156166..6157227 1062..1 5310 100 Minus
3R 32079331 3R 6150115..6151050 1996..1061 4680 100 Minus
X 23542271 X 3466398..3466634 1297..1061 435 78.9 Minus
X 23542271 X 3466033..3466186 1537..1384 320 80.5 Minus
X 23542271 X 3471885..3471961 1048..972 250 88.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5896997..5898058 1062..1 5310 100 Minus
3R 31820162 3R 5890946..5891881 1996..1061 4680 100 Minus
X 23527363 X 3474548..3474732 1245..1061 370 80 Minus
X 23527363 X 3474131..3474284 1537..1384 320 80.5 Minus
X 23527363 X 3479983..3480059 1048..972 250 88.3 Minus
X 23527363 X 3474496..3474535 1297..1258 140 90 Minus
Blast to na_te.dros performed 2019-03-16 04:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
transib2 2844 transib2 TRANSIB2 2844bp 1317..1493 1726..1913 122 55.3 Plus

RE15313.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:48:15 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1975782..1976720 1063..1995 99 <- Minus
chr3R 1981820..1982888 1..1062 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:11 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 1..1365 172..1536 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:07 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 1..1365 172..1536 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:41:39 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 1..1365 172..1536 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:18 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 1..1365 172..1536 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:50:33 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 1..1365 172..1536 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:42:39 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 1..1995 1..1995 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:07 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 1..1995 1..1995 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:39 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 9..2003 1..1995 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:18 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 1..1995 1..1995 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:50:33 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG31559-RA 9..2003 1..1995 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:15 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6150116..6151048 1063..1995 100 <- Minus
3R 6156166..6157227 1..1062 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:15 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6150116..6151048 1063..1995 100 <- Minus
3R 6156166..6157227 1..1062 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:15 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6150116..6151048 1063..1995 100 <- Minus
3R 6156166..6157227 1..1062 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:39 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1975838..1976770 1063..1995 100 <- Minus
arm_3R 1981888..1982949 1..1062 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:13:45 Download gff for RE15313.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5890947..5891879 1063..1995 100 <- Minus
3R 5896997..5898058 1..1062 100   Minus

RE15313.hyp Sequence

Translation from 171 to 1535

> RE15313.hyp
MVLATPPVSKGGNAGGLFMDQYQQYAAHCETADSGNGSDLESTGLPTKPD
DSEESGPSSLGSDSMHGSSTEYVRQSASQPSGQRQRQKSLRVLGALLPDS
LLRDIRDRRSTEYVVQFSQPEDEEKIQVPDKIPEKPSPFRLARESLSEDK
IEELRAAVERANFVQTGEETLDSIDATSQSLPASSNIGGHRGNINYKYAD
DQYYSFHINEHENFGARSARSGDEADHSTGAGSEAGSDSGILTEQQDLFA
GYRDVRCGASSTQSTIRSAKGTVRGVKNRVRNGIATFLQLQQQPNAKNFK
EKDLGKVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQ
AEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMA
STYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVK
CHNC*

RE15313.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31559-PA 454 CG31559-PA 1..454 1..454 2353 100 Plus
CG12206-PC 582 CG12206-PC 208..582 19..454 950 48.3 Plus
CG12206-PB 582 CG12206-PB 208..582 19..454 950 48.3 Plus
CG12206-PA 582 CG12206-PA 208..582 19..454 950 48.3 Plus

RE15313.pep Sequence

Translation from 171 to 1535

> RE15313.pep
MVLATPPVSKGGNAGGLFMDQYQQYAAHCETADSGNGSDLESTGLPTKPD
DSEESGPSSLGSDSMHGSSTEYVRQSASQPSGQRQRQKSLRVLGALLPDS
LLRDIRDRRSTEYVVQFSQPEDEEKIQVPDKIPEKPSPFRLARESLSEDK
IEELRAAVERANFVQTGEETLDSIDATSQSLPASSNIGGHRGNINYKYAD
DQYYSFHINEHENFGARSARSGDEADHSTGAGSEAGSDSGILTEQQDLFA
GYRDVRCGASSTQSTIRSAKGTVRGVKNRVRNGIATFLQLQQQPNAKNFK
EKDLGKVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQ
AEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMA
STYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVK
CHNC*

RE15313.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18626-PA 435 GF18626-PA 1..435 1..454 1970 83.8 Plus
Dana\GF21786-PA 571 GF21786-PA 291..571 172..454 981 67.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10566-PA 446 GG10566-PA 1..446 1..454 2334 96 Plus
Dere\GG18581-PA 587 GG18581-PA 340..587 197..454 1007 71.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14284-PA 472 GH14284-PA 12..472 6..454 1601 68.9 Plus
Dgri\GH12400-PA 717 GH12400-PA 451..717 197..454 980 68.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31559-PA 454 CG31559-PA 1..454 1..454 2353 100 Plus
CG12206-PC 582 CG12206-PC 208..582 19..454 950 48.3 Plus
CG12206-PB 582 CG12206-PB 208..582 19..454 950 48.3 Plus
CG12206-PA 582 CG12206-PA 208..582 19..454 950 48.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23178-PA 483 GI23178-PA 21..483 15..454 1651 70 Plus
Dmoj\GI14338-PA 608 GI14338-PA 350..608 197..454 975 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23481-PA 495 GL23481-PA 1..495 1..454 1788 72.1 Plus
Dper\GL12878-PA 612 GL12878-PA 335..612 178..454 1006 68.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16323-PA 490 GA16323-PA 1..490 1..454 1808 73.2 Plus
Dpse\GA22613-PA 639 GA22613-PA 364..639 180..454 1006 68.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10565-PA 451 GM10565-PA 1..451 1..454 2389 98.2 Plus
Dsec\GM12724-PA 585 GM12724-PA 338..585 197..454 1004 71 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19557-PA 416 GD19557-PA 1..416 1..454 2167 90.5 Plus
Dsim\GD16330-PA 570 GD16330-PA 323..570 197..454 1001 70.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14491-PA 456 GJ14491-PA 24..456 18..454 1675 75.5 Plus
Dvir\GJ19392-PA 714 GJ19392-PA 463..714 197..454 1015 73.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14208-PA 457 GK14208-PA 17..457 11..454 1686 74.5 Plus
Dwil\GK10147-PA 697 GK10147-PA 444..697 197..454 968 69.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24113-PA 456 GE24113-PA 1..456 1..454 2382 97.1 Plus
Dyak\GE16893-PA 597 GE16893-PA 350..597 197..454 1026 73.7 Plus