BDGP Sequence Production Resources |
Search the DGRC for RE15313
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 153 |
Well: | 13 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG31559-RA |
Protein status: | RE15313.pep: gold |
Preliminary Size: | 1023 |
Sequenced Size: | 2011 |
Gene | Date | Evidence |
---|---|---|
CG31559 | 2001-12-14 | Blastp of sequenced clone |
CG15584 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31559 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31559 | 2008-04-29 | Release 5.5 accounting |
CG31559 | 2008-08-15 | Release 5.9 accounting |
CG31559 | 2008-12-18 | 5.12 accounting |
2011 bp (2011 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071086
> RE15313.complete AGTCTAGCGACGATATCTGAAGCATAAAGACATGCGACGTCTCGGGTGCA ACGTCCGTCAGAGTCATTGAACGCTTGCATTTTCCTGGGCCAATCCGATA AAAGCCAATACTGTACAGTGCCAGCCGAAAGACGGCTTACTCCGCAGACT CTAGATAGCCAGATAAGTGATATGGTGCTGGCCACGCCCCCTGTGAGCAA GGGCGGTAACGCGGGCGGCCTCTTCATGGACCAGTATCAGCAGTACGCGG CCCACTGTGAAACCGCCGACAGTGGCAATGGCAGTGACCTGGAGAGCACC GGATTGCCCACCAAACCGGATGACAGCGAGGAGAGTGGCCCCTCCTCGCT GGGCAGCGACTCCATGCACGGGAGCAGCACGGAGTACGTGCGACAGTCCG CCTCCCAGCCCAGTGGCCAGCGGCAGCGACAGAAGTCCTTGCGGGTCCTG GGTGCCCTGCTCCCCGACAGCCTGCTCCGCGACATACGGGACCGGAGGAG CACCGAGTATGTGGTACAGTTCTCGCAGCCAGAGGATGAGGAGAAGATCC AGGTCCCCGACAAGATTCCGGAGAAACCCAGTCCGTTCCGCCTGGCCCGC GAATCGCTGAGCGAGGACAAAATAGAGGAGCTGCGGGCCGCAGTGGAGCG GGCCAACTTCGTTCAAACCGGTGAGGAGACGCTGGACAGCATCGATGCCA CATCGCAGTCTCTTCCAGCCAGCAGCAACATCGGCGGACACCGCGGCAAT ATCAATTACAAGTATGCTGACGACCAATACTACAGCTTTCACATCAACGA GCACGAGAACTTCGGTGCGAGAAGCGCGAGAAGTGGCGACGAGGCGGACC ACTCCACGGGAGCGGGATCGGAGGCTGGCTCCGACAGCGGGATCCTAACG GAGCAGCAAGACCTCTTCGCCGGCTATCGGGACGTGCGATGTGGGGCCAG TTCCACCCAGTCCACTATCCGATCGGCCAAGGGAACGGTGCGGGGCGTCA AGAACCGTGTGCGCAATGGAATAGCCACGTTCTTGCAGCTCCAGCAGCAG CCCAATGCCAAGAACTTCAAGGAGAAAGACCTGGGCAAGGTGGTGCTGTA CACCACCAGCATGGGCATCATCCGGGAAACCTACACGAAGTGTGCCAACG TCAAGCAGATCCTGCGCACCCTGCTGGTCAAGTTTGAGGAGCGGGACGTC TTCATGAGCGTGGAGTACCAGGCGGAGATGCGCCAGCGGATGCAGAGCGG TCAGGTGCGGGTGCCACAGCTGTACGTCGAGGGCCAGCACATCGGGGACG CCGAGACCGTGGAGCGGATGAACGAGTCCGGCGAGCTGAGGCAGCTGCTC AAACCGTACAAGTCCATGGCCAGCACCTACACCTGCCAGACCTGCGGCGG CTACCGCCTGCTGCCCTGCCCCTCCTGCAACGGGTCCAAGAAGTCCGTGC ACCGCAACCACTTCACTGCCGAGTTCGTGGCCCTCAAGTGCATGAACTGC GACGAGGTGGGCCTGGTCAAGTGCCACAATTGCTGAGTCGCAGTCCGAGT CCCAGTTCTAGAATTCGTAAGCCCAGTTAGTCTAAGCCGCTAAAATCCAA TACTCTCGGAATATGCTAGGCTTAAGTAGTAAATAGCTAATCCGTACCAG GGTCTGTGTTTTCATTTTCGAGGAAATAGTGGGGGTAAATTTACGTACTA GCAAGTTTCAGCGAAAATTTGGGATAAGTACTTTGCTAAAATATTTAATC TTTAATTAATTTGCTTAGACGCATTAAGTTTTCTGCTAACTCCTGCTAAT GTGTCAAAAAATCATCTTTATAAAGAGGTAAGTTATACAATAGGTAAATT TTAGGTCAATAAATGTTTGTTTAATCGGTGAATCCCAATGAGAACATTTA AGTTTTGAATAATTATGTATAAGTTCGTCAATTTTAAGCTAATACAACAA TCAAAACCAACAAGAATTTAGAAATAAATATAAAGTCAACCAAGGAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31559-RA | 2130 | CG31559-RA | 104..2099 | 1..1996 | 9980 | 100 | Plus |
CG31559.a | 2482 | CG31559.a | 456..2451 | 1..1996 | 9980 | 100 | Plus |
CG12206-RA | 2412 | CG12206-RA | 1554..1824 | 972..1245 | 610 | 82.1 | Plus |
CG12206-RA | 2412 | CG12206-RA | 1837..2116 | 1258..1537 | 470 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1981820..1982888 | 1062..1 | 5205 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 1975782..1976722 | 1995..1061 | 4580 | 99.4 | Minus |
chrX | 22417052 | chrX | 3359907..3360143 | 1297..1061 | 435 | 78.9 | Minus |
chrX | 22417052 | chrX | 3359542..3359695 | 1537..1384 | 350 | 81.8 | Minus |
chrX | 22417052 | chrX | 3365406..3365482 | 1048..972 | 250 | 88.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 6156166..6157227 | 1062..1 | 5310 | 100 | Minus |
3R | 32079331 | 3R | 6150115..6151050 | 1996..1061 | 4680 | 100 | Minus |
X | 23542271 | X | 3466398..3466634 | 1297..1061 | 435 | 78.9 | Minus |
X | 23542271 | X | 3466033..3466186 | 1537..1384 | 320 | 80.5 | Minus |
X | 23542271 | X | 3471885..3471961 | 1048..972 | 250 | 88.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5896997..5898058 | 1062..1 | 5310 | 100 | Minus |
3R | 31820162 | 3R | 5890946..5891881 | 1996..1061 | 4680 | 100 | Minus |
X | 23527363 | X | 3474548..3474732 | 1245..1061 | 370 | 80 | Minus |
X | 23527363 | X | 3474131..3474284 | 1537..1384 | 320 | 80.5 | Minus |
X | 23527363 | X | 3479983..3480059 | 1048..972 | 250 | 88.3 | Minus |
X | 23527363 | X | 3474496..3474535 | 1297..1258 | 140 | 90 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
transib2 | 2844 | transib2 TRANSIB2 2844bp | 1317..1493 | 1726..1913 | 122 | 55.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1975782..1976720 | 1063..1995 | 99 | <- | Minus |
chr3R | 1981820..1982888 | 1..1062 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31559-RA | 1..1365 | 172..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31559-RA | 1..1365 | 172..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31559-RA | 1..1365 | 172..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31559-RA | 1..1365 | 172..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31559-RA | 1..1365 | 172..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31559-RA | 1..1995 | 1..1995 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31559-RA | 1..1995 | 1..1995 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31559-RA | 9..2003 | 1..1995 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31559-RA | 1..1995 | 1..1995 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31559-RA | 9..2003 | 1..1995 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6150116..6151048 | 1063..1995 | 100 | <- | Minus |
3R | 6156166..6157227 | 1..1062 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6150116..6151048 | 1063..1995 | 100 | <- | Minus |
3R | 6156166..6157227 | 1..1062 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6150116..6151048 | 1063..1995 | 100 | <- | Minus |
3R | 6156166..6157227 | 1..1062 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1975838..1976770 | 1063..1995 | 100 | <- | Minus |
arm_3R | 1981888..1982949 | 1..1062 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5890947..5891879 | 1063..1995 | 100 | <- | Minus |
3R | 5896997..5898058 | 1..1062 | 100 | Minus |
Translation from 171 to 1535
> RE15313.hyp MVLATPPVSKGGNAGGLFMDQYQQYAAHCETADSGNGSDLESTGLPTKPD DSEESGPSSLGSDSMHGSSTEYVRQSASQPSGQRQRQKSLRVLGALLPDS LLRDIRDRRSTEYVVQFSQPEDEEKIQVPDKIPEKPSPFRLARESLSEDK IEELRAAVERANFVQTGEETLDSIDATSQSLPASSNIGGHRGNINYKYAD DQYYSFHINEHENFGARSARSGDEADHSTGAGSEAGSDSGILTEQQDLFA GYRDVRCGASSTQSTIRSAKGTVRGVKNRVRNGIATFLQLQQQPNAKNFK EKDLGKVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQ AEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMA STYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVK CHNC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31559-PA | 454 | CG31559-PA | 1..454 | 1..454 | 2353 | 100 | Plus |
CG12206-PC | 582 | CG12206-PC | 208..582 | 19..454 | 950 | 48.3 | Plus |
CG12206-PB | 582 | CG12206-PB | 208..582 | 19..454 | 950 | 48.3 | Plus |
CG12206-PA | 582 | CG12206-PA | 208..582 | 19..454 | 950 | 48.3 | Plus |
Translation from 171 to 1535
> RE15313.pep MVLATPPVSKGGNAGGLFMDQYQQYAAHCETADSGNGSDLESTGLPTKPD DSEESGPSSLGSDSMHGSSTEYVRQSASQPSGQRQRQKSLRVLGALLPDS LLRDIRDRRSTEYVVQFSQPEDEEKIQVPDKIPEKPSPFRLARESLSEDK IEELRAAVERANFVQTGEETLDSIDATSQSLPASSNIGGHRGNINYKYAD DQYYSFHINEHENFGARSARSGDEADHSTGAGSEAGSDSGILTEQQDLFA GYRDVRCGASSTQSTIRSAKGTVRGVKNRVRNGIATFLQLQQQPNAKNFK EKDLGKVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQ AEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMA STYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALKCMNCDEVGLVK CHNC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18626-PA | 435 | GF18626-PA | 1..435 | 1..454 | 1970 | 83.8 | Plus |
Dana\GF21786-PA | 571 | GF21786-PA | 291..571 | 172..454 | 981 | 67.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10566-PA | 446 | GG10566-PA | 1..446 | 1..454 | 2334 | 96 | Plus |
Dere\GG18581-PA | 587 | GG18581-PA | 340..587 | 197..454 | 1007 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14284-PA | 472 | GH14284-PA | 12..472 | 6..454 | 1601 | 68.9 | Plus |
Dgri\GH12400-PA | 717 | GH12400-PA | 451..717 | 197..454 | 980 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31559-PA | 454 | CG31559-PA | 1..454 | 1..454 | 2353 | 100 | Plus |
CG12206-PC | 582 | CG12206-PC | 208..582 | 19..454 | 950 | 48.3 | Plus |
CG12206-PB | 582 | CG12206-PB | 208..582 | 19..454 | 950 | 48.3 | Plus |
CG12206-PA | 582 | CG12206-PA | 208..582 | 19..454 | 950 | 48.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23178-PA | 483 | GI23178-PA | 21..483 | 15..454 | 1651 | 70 | Plus |
Dmoj\GI14338-PA | 608 | GI14338-PA | 350..608 | 197..454 | 975 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23481-PA | 495 | GL23481-PA | 1..495 | 1..454 | 1788 | 72.1 | Plus |
Dper\GL12878-PA | 612 | GL12878-PA | 335..612 | 178..454 | 1006 | 68.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16323-PA | 490 | GA16323-PA | 1..490 | 1..454 | 1808 | 73.2 | Plus |
Dpse\GA22613-PA | 639 | GA22613-PA | 364..639 | 180..454 | 1006 | 68.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10565-PA | 451 | GM10565-PA | 1..451 | 1..454 | 2389 | 98.2 | Plus |
Dsec\GM12724-PA | 585 | GM12724-PA | 338..585 | 197..454 | 1004 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19557-PA | 416 | GD19557-PA | 1..416 | 1..454 | 2167 | 90.5 | Plus |
Dsim\GD16330-PA | 570 | GD16330-PA | 323..570 | 197..454 | 1001 | 70.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14491-PA | 456 | GJ14491-PA | 24..456 | 18..454 | 1675 | 75.5 | Plus |
Dvir\GJ19392-PA | 714 | GJ19392-PA | 463..714 | 197..454 | 1015 | 73.7 | Plus |