Clone RE15336 Report

Search the DGRC for RE15336

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:153
Well:36
Vector:pFlc-1
Associated Gene/TranscriptNos-RA
Protein status:RE15336.pep: gold
Sequenced Size:4718

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18561 2002-01-01 Sim4 clustering to Release 2
CG17130 2002-01-01 Sim4 clustering to Release 2
CG6713 2003-01-01 Sim4 clustering to Release 3
CG6713 2003-08-05 Blastp of sequenced clone
Nos 2008-04-29 Release 5.5 accounting
Nos 2008-08-15 Release 5.9 accounting
Nos 2008-12-18 5.12 accounting

Clone Sequence Records

RE15336.complete Sequence

4718 bp (4718 high quality bases) assembled on 2003-08-05

GenBank Submission: BT010016

> RE15336.complete
AGTCAACGCGCGGCGTTCGAGTTCTTTGGATCGCGCTGAAAACTGAAATC
GAAGGACCACACAGAGATAATCAAAAGAAACTGAAATTCAAAAAGAGTCC
TTAAATCTTATTGTCAGTGAAGTGACCGAAAGAAGAGTGGAGAGAAATAT
TTATTTCTTTGTGTAATAAACTACTGTTAATAGTTACCATAAATTAATCT
ATTTAATTACAAGAATATAGTTTTTGAAAAGTGAAGCAATTGAGTGCGGC
CCGAAAAAGAGAGCCGCAGAAAGTTTGCGAACAGAATTTAATCAAAAACT
TGGAGGGTAAATTGTCCAAGTGGTTCACCTGTTGGCTGCATTTTAAATCA
ACGAGGCAAACAATCAGCGCAGAGGAGCTGCTCCACGTTCCCCGGACAAG
ATGTCGCAGCATTTCACATCGATATTTGAGAACCTGCGATTCGTGACCAT
CAAACGTTCGACAAATGCGCAACAGCAACAGCAGCAGCAGCAACAGCAAC
TGCAGCAGCAGCAGCAGCAGCTGCAGCAACAGAAGGCACAGACACAGCAA
CAAAATAGCAGAAAAATCAAAACTCAAGCAACGCCAACGTTGAATGGCAA
TGGGCTCTTGAGCGGCAATCCAAATGGCGGAGGCGGTGACTCCTCGCCCA
GCCATGAAGTGGACCATCCGGGTGGAGCACAAGGAGCTCAAGCAGCAGGA
GGCTTGCCATCTTCAAGTGGCACGCCATTGAGGCACCACAAGCGCGCCAG
TATCTCCACAGCATCGCCTCCAATCCGCGAACGGCGTGGCACCAACACCA
GCATCGTGGTCGAACTGGATGGCAGTGGCAGCGGGAGTGGGAGTGGCGGT
GGTGGCGTTGGCGTTGGTCAGGGTGCGGGTTGTCCTCCCTCGGGCAGCTG
CACTGCGTCCGGAAAAAGTTCGCGGGAACTATCGCCGTCGCCGAAAAACC
AACAGCAGCCCAGAAAGATGTCACAGGATTATCGGTCGCGTGCCGGCAGT
TTTATGCACCTGGACGACGAGGGACGCAGTCTGCTGATGCGCAAGCCGAT
GAGACTGAAGAACATCGAGGGCAGGCCGGAGGTCTACGACACGCTGCACT
GCAAGGGTCGCGAGATTCTTTCCTGCTCGAAGGCCACCTGTACGAGCAGC
ATTATGAACATTGGCAATGCGGCGGTGGAGGCCAGGAAATCCGATCTGAT
CCTCGAACACGCCAAGGACTTCCTCGAGCAGTACTTTACATCGATAAAGC
GTACATCATCTACCGCCCACGAGACGCGATGGAAACAGGTGCGCCAGAGC
ATTGAGACCACTGGACATTATCAGCTAACCGAAACGGAACTAATTTATGG
TGCCAAATTGGCCTGGCGCAATTCTTCACGTTGCATTGGCCGAATACAAT
GGTCGAAGTTGCAGGTCTTTGACTGTCGGTATGTGACAACAACAAGTGGC
ATGTTTGAAGCCATTTGCAATCACATTAAATATGCAACAAATAAGGGCAA
CCTGAGATCGGCCATCACGATATTTCCACAACGCACAGATGCCAAGCATG
ATTATCGCATTTGGAATAACCAATTAATATCTTATGCCGGCTACAAGCAG
GCGGATGGGAAAATCATTGGCGATCCCATGAATGTGGAGTTTACAGAGGT
CTGCACCAAGCTGGGCTGGAAGAGCAAGGGCAGCGAGTGGGACATACTGC
CATTGGTGGTCTCGGCCAATGGTCACGATCCGGACTACTTTGATTACCCG
CCCGAATTGATACTGGAAGTTCCGCTGACCCATCCAAAATTCGAATGGTT
CTCGGATCTGGGACTGCGATGGTACGCCCTGCCCGCCGTATCCAGTATGC
TGTTCGATGTGGGCGGCATTCAGTTTACGGCCACCACATTCAGTGGTTGG
TACATGTCGACAGAGATTGGCAGCCGGAATTTATGCGACACAAATCGCCG
CAATATGCTGGAGACGGTGGCGCTGAAGATGCAACTGGACACCCGTACGC
CCACATCCTTGTGGAAGGACAAGGCTGTGGTGGAGATGAACATTGCCGTG
CTCCACTCCTACCAGAGTCGCAACGTGACCATTGTGGATCACCACACGGC
CAGCGAGAGCTTTATGAAGCATTTCGAGAACGAGTCCAAGCTCAGGAATG
GGTGTCCCGCTGATTGGATTTGGATCGTGCCGCCGCTGTCGGGCTCCATA
ACGCCGGTATTCCATCAGGAGATGGCTCTGTACTACCTGAAGCCCTCGTT
CGAGTACCAGGATCCCGCCTGGCGAACCCACGTGTGGAAGAAGGGGCGTG
GCGAGAGCAAGGGCAAGAAGCCAAGACGTAAATTCAATTTTAAACAAATC
GCTAGGGCTGTGAAATTTACATCGAAACTATTTGGACGCGCCTTATCGAA
ACGCATAAAGGCAACAGTTCTATATGCCACCGAAACTGGCAAATCGGAGC
AATATGCGAAGCAACTTTGTGAACTCCTAGGGCACGCATTCAATGCACAG
ATATATTGCATGTCCGACTACGATATATCCTCCATTGAGCACGAGGCATT
GTTAATTGTTGTGGCCTCCACCTTTGGCAACGGTGATCCGCCCGAAAACG
GCGAGCTTTTCTCCCAGGAATTGTATGCGATGCGTGTCCAGGAGTCTTCC
GAGCATGGATTGCAGGACTCCAGCATTGGCTCGTCAAAGTCCTTCATGAA
GGCCAGCTCGCGGCAGGAGTTCATGAAGCTGCCACTGCAACAGGTGAAGA
GAATCGACCGCTGGGACTCGCTGCGGGGCTCCACCTCGGACACCTTCACC
GAGGAGACCTTTGGCCCCCTCTCCAATGTCCGGTTCGCCGTTTTTGCCCT
CGGCTCCTCGGCCTATCCAAATTTCTGCGCCTTCGGTCAGTATGTGGACA
ACATTCTGGGCGAGCTGGGCGGCGAACGCCTGCTGAGGGTGGCCTACGGC
GACGAGATGTGCGGACAGGAGCAGTCGTTCCGGAAGTGGGCGCCCGAGGT
ATTCAAGTTGGCCTGCGAGACCTTCTGCCTGGATCCAGAGGAGAGCCTTT
CGGATGCCTCGCTAGCCCTGCAGAACGATTCGCTGACTGTGAATACGGTG
CGCCTGGTGCCGTCGGCGAATAAGGGATCCCTGGACAGCAGCTTATCCAA
GTACCACAACAAGAAGGTGCACTGCTGCAAGGCGAAGGCGAAGCCCCACA
ATTTGACCCGTTTGAGTGAGGGAGCCAAGACAACGATGCTGCTGGAGATC
TGTGCACCTGGCTTGGAGTACGAGCCGGGTGATCATGTGGGCATCTTTCC
GGCGAATCGAACGGAACTGGTCGACGGACTGCTAAATCGACTGGTGGGTG
TGGATAATCCCGACGAGGTGCTGCAGTTGCAATTGCTAAAGGAAAAGCAG
ACATCGAATGGTATATTCAAGTGCTGGGAGCCGCACGACAAAATACCGCC
GGATACTCTAAGGAATCTTCTGGCCCGATTCTTTGATCTGACCACTCCGC
CATCGCGACAGTTGCTCACCCTGCTGGCAGGATTCTGTGAGGATACCGCG
GACAAGGAGCGGCTGGAGTTGCTGGTCAACGATTCGTCGGCCTACGAGGA
CTGGCGGCACTGGCGGCTGCCCCATCTGCTGGACGTTCTCGAGGAGTTCC
CCTCGTGCCGACCACCGGCTCCCCTTCTGCTTGCCCAACTAACGCCGCTG
CAGCCTCGCTTCTATTCCATTTCTTCGTCGCCGCGCCGCGTTAGTGACGA
AATCCACCTCACGGTGGCCATCGTGAAGTACCGCTGTGAAGATGGCCAGG
GAGACGAGCGGTATGGCGTGTGCTCTAACTATCTATCCGGCTTGCGGGCA
GACGACGAGCTGTTCATGTTCGTGAGGAGCGCCTTGGGCTTCCATTTGCC
CAGCGATCGGAGTCGTCCCATTATTCTGATTGGTCCTGGCACAGGAATAG
CTCCATTCCGCTCCTTTTGGCAGGAGTTCCAGGTGCTAAGCGACCTTGAT
CCCACGGCCAAATTGCCCAAGATGTGGCTCTTCTTTGGCTGCCGTAATCG
GGATGTCGATTTGTACGCCGAGGAGAAGGCAGAGCTACAGAAGGATCAAA
TCCTAGACCGAGTTTTTCTCGCTCTGTCCAGGGAGCAGGCCATTCCGAAG
ACATATGTGCAGGACCTGATTGAGCAGGAATTCGATTCGTTGTACCAGTT
GATTGTCCAGGAGCGGGGCCACATCTACGTCTGCGGCGATGTCACAATGG
CCGAGCATGTGTACCAGACCATCAGGAAGTGCATTGCCGGCAAAGAGCAG
AAAAGCGAGGCGGAAGTTGAGACATTTTTGCTAACACTGCGGGACGAAAG
TCGCTACCACGAGGACATCTTTGGCATCACGCTGCGAACGGCTGAGATAC
ACACAAAGTCAAGGGCCACGGCCAGGATACGAATGGCCTCCCAGCCATAA
GGATAGATATTCGAAGTAATCAAAATAGGAGGGTGACATATCCAAATTCA
AGAGGAATACCAAGCACTTGCTCTTTTTTTTCTTCCATATTCAAATGCAA
TTAAATATTGTCGCTTTGTTCATTACATATTCGTATGAATAACGTTTAAA
TAAATTACATTTTATTATTGATTCTAATGTACAAATCAATTGTGAAATCA
AAATCTAAATGTTAAAATATATTTCAAATAAACGAATCGAAAAAGAAAAA
AGAAAAAAAAAAAAAAAA

RE15336.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Nos-RF 4810 Nos-RF 2..2606 1..2605 13025 100 Plus
Nos-RH 5542 Nos-RH 2..2501 1..2500 12500 100 Plus
Nos-RI 5125 Nos-RI 2..2501 1..2500 12500 100 Plus
Nos-RH 5542 Nos-RH 3446..5540 2604..4698 10460 99.9 Plus
Nos-RI 5125 Nos-RI 3029..5123 2604..4698 10460 99.9 Plus
Nos-RF 4810 Nos-RF 2714..4808 2604..4698 10460 99.9 Plus
Nos-RH 5542 Nos-RH 3232..3338 2499..2605 535 100 Plus
Nos-RI 5125 Nos-RI 2815..2921 2499..2605 535 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10804733..10805877 4150..3006 5710 99.9 Minus
chr2L 23010047 chr2L 10830098..10830867 999..230 3850 100 Minus
chr2L 23010047 chr2L 10803019..10803375 4698..4342 1785 100 Minus
chr2L 23010047 chr2L 10806039..10806375 3007..2671 1685 100 Minus
chr2L 23010047 chr2L 10836050..10836280 231..1 1155 100 Minus
chr2L 23010047 chr2L 10814755..10814967 2356..2144 1065 100 Minus
chr2L 23010047 chr2L 10815709..10815893 2146..1962 910 99.5 Minus
chr2L 23010047 chr2L 10817139..10817313 1963..1789 875 100 Minus
chr2L 23010047 chr2L 10824435..10824600 1416..1251 830 100 Minus
chr2L 23010047 chr2L 10821724..10821869 1650..1505 730 100 Minus
chr2L 23010047 chr2L 10820864..10821005 1788..1647 710 100 Minus
chr2L 23010047 chr2L 10812033..10812179 2500..2354 705 98.6 Minus
chr2L 23010047 chr2L 10824712..10824850 1251..1113 695 100 Minus
chr2L 23010047 chr2L 10804366..10804493 4276..4149 640 100 Minus
chr2L 23010047 chr2L 10829369..10829487 1114..996 595 100 Minus
chr2L 23010047 chr2L 10811200..10811306 2605..2499 535 100 Minus
chr2L 23010047 chr2L 10822536..10822633 1506..1409 490 100 Minus
chr2L 23010047 chr2L 10803577..10803647 4343..4273 355 100 Minus
chr2L 23010047 chr2L 10811023..10811092 2673..2604 350 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10805985..10807129 4150..3006 5710 99.9 Minus
2L 23513712 2L 10831329..10832098 999..230 3850 100 Minus
2L 23513712 2L 10804271..10804627 4698..4342 1785 100 Minus
2L 23513712 2L 10807291..10807627 3007..2671 1685 100 Minus
2L 23513712 2L 10837280..10837510 231..1 1155 100 Minus
2L 23513712 2L 10816023..10816235 2356..2144 1065 100 Minus
2L 23513712 2L 10816962..10817146 2146..1962 925 100 Minus
2L 23513712 2L 10818392..10818566 1963..1789 875 100 Minus
2L 23513712 2L 10825672..10825837 1416..1251 830 100 Minus
2L 23513712 2L 10813301..10813447 2500..2354 735 100 Minus
2L 23513712 2L 10822966..10823111 1650..1505 730 100 Minus
2L 23513712 2L 10822107..10822248 1788..1647 710 100 Minus
2L 23513712 2L 10825949..10826087 1251..1113 695 100 Minus
2L 23513712 2L 10805618..10805745 4276..4149 640 100 Minus
2L 23513712 2L 10830600..10830718 1114..996 595 100 Minus
2L 23513712 2L 10812464..10812570 2605..2499 535 100 Minus
2L 23513712 2L 10823761..10823858 1506..1409 490 100 Minus
2L 23513712 2L 10804829..10804899 4343..4273 355 100 Minus
2L 23513712 2L 10812287..10812356 2673..2604 350 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10805985..10807129 4150..3006 5710 99.9 Minus
2L 23513712 2L 10831329..10832098 999..230 3850 100 Minus
2L 23513712 2L 10804271..10804627 4698..4342 1785 100 Minus
2L 23513712 2L 10807291..10807627 3007..2671 1685 100 Minus
2L 23513712 2L 10837280..10837510 231..1 1155 100 Minus
2L 23513712 2L 10816023..10816235 2356..2144 1065 100 Minus
2L 23513712 2L 10816962..10817146 2146..1962 925 100 Minus
2L 23513712 2L 10818392..10818566 1963..1789 875 100 Minus
2L 23513712 2L 10825672..10825837 1416..1251 830 100 Minus
2L 23513712 2L 10813301..10813447 2500..2354 735 100 Minus
2L 23513712 2L 10822966..10823111 1650..1505 730 100 Minus
2L 23513712 2L 10822107..10822248 1788..1647 710 100 Minus
2L 23513712 2L 10825949..10826087 1251..1113 695 100 Minus
2L 23513712 2L 10805618..10805745 4276..4149 640 100 Minus
2L 23513712 2L 10830600..10830718 1114..996 595 100 Minus
2L 23513712 2L 10812464..10812570 2605..2499 535 100 Minus
2L 23513712 2L 10823761..10823858 1506..1409 490 100 Minus
2L 23513712 2L 10804829..10804899 4343..4273 355 100 Minus
2L 23513712 2L 10812287..10812356 2673..2604 350 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:37:52 has no hits.

RE15336.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:39:06 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10817139..10817313 1789..1963 100 <- Minus
chr2L 10820864..10821003 1649..1788 100 <- Minus
chr2L 10821726..10821867 1507..1648 100 <- Minus
chr2L 10822536..10822627 1415..1506 100 <- Minus
chr2L 10824437..10824599 1252..1414 100 <- Minus
chr2L 10824712..10824848 1115..1251 100 <- Minus
chr2L 10829369..10829483 1000..1114 100 <- Minus
chr2L 10811200..10811304 2501..2605 100 <- Minus
chr2L 10812033..10812177 2356..2500 98 <- Minus
chr2L 10814756..10814965 2146..2355 100 <- Minus
chr2L 10815710..10815891 1964..2145 99 <- Minus
chr2L 10803014..10803374 4343..4702 98 <- Minus
chr2L 10803578..10803644 4276..4342 100 <- Minus
chr2L 10804367..10804491 4151..4275 100 <- Minus
chr2L 10804733..10805875 3008..4150 99 <- Minus
chr2L 10806039..10806372 2674..3007 100 <- Minus
chr2L 10811023..10811090 2606..2673 100 <- Minus
chr2L 10830098..10830564 533..999 100 == Minus
chr2L 10830629..10830865 232..468 100 <- Minus
chr2L 10836050..10836280 1..231 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:23:57 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
Nos-RA 1..4050 401..4450 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:46 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
Nos-RA 1..4050 401..4450 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:27:49 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
Nos-RA 1..4050 401..4450 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:03 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
Nos-RA 1..4050 401..4450 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:47 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
Nos-RA 1..4050 401..4450 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:23:55 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
Nos-RF 2..2606 1..2605 100 -> Plus
Nos-RF 2716..4799 2606..4689 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:46 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
Nos-RF 2..2606 1..2605 100 -> Plus
Nos-RF 2716..4799 2606..4689 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:27:49 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
Nos-RA 2..4696 1..4695 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:03 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
Nos-RF 2716..4799 2606..4689 99   Plus
Nos-RF 2..2606 1..2605 100 -> Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:47 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
Nos-RA 2..4696 1..4695 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:06 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10825949..10826085 1115..1251 100 <- Minus
2L 10830600..10830714 1000..1114 100 <- Minus
2L 10816024..10816233 2146..2355 100 <- Minus
2L 10804266..10804626 4343..4702 98 <- Minus
2L 10804830..10804896 4276..4342 100 <- Minus
2L 10805619..10805743 4151..4275 100 <- Minus
2L 10805985..10807127 3008..4150 99 <- Minus
2L 10807291..10807624 2674..3007 100 <- Minus
2L 10812287..10812354 2606..2673 100 <- Minus
2L 10812464..10812568 2501..2605 100 <- Minus
2L 10813301..10813445 2356..2500 100 <- Minus
2L 10816963..10817144 1964..2145 100 <- Minus
2L 10818392..10818566 1789..1963 100 <- Minus
2L 10822107..10822246 1649..1788 100 <- Minus
2L 10822968..10823109 1507..1648 100 <- Minus
2L 10823761..10823852 1415..1506 100 <- Minus
2L 10825674..10825836 1252..1414 100 <- Minus
2L 10831329..10832096 232..999 100 <- Minus
2L 10837280..10837510 1..231 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:06 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10825949..10826085 1115..1251 100 <- Minus
2L 10830600..10830714 1000..1114 100 <- Minus
2L 10816024..10816233 2146..2355 100 <- Minus
2L 10804266..10804626 4343..4702 98 <- Minus
2L 10804830..10804896 4276..4342 100 <- Minus
2L 10805619..10805743 4151..4275 100 <- Minus
2L 10805985..10807127 3008..4150 99 <- Minus
2L 10807291..10807624 2674..3007 100 <- Minus
2L 10812287..10812354 2606..2673 100 <- Minus
2L 10812464..10812568 2501..2605 100 <- Minus
2L 10813301..10813445 2356..2500 100 <- Minus
2L 10816963..10817144 1964..2145 100 <- Minus
2L 10818392..10818566 1789..1963 100 <- Minus
2L 10822107..10822246 1649..1788 100 <- Minus
2L 10822968..10823109 1507..1648 100 <- Minus
2L 10823761..10823852 1415..1506 100 <- Minus
2L 10825674..10825836 1252..1414 100 <- Minus
2L 10831329..10832096 232..999 100 <- Minus
2L 10837280..10837510 1..231 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:06 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10825949..10826085 1115..1251 100 <- Minus
2L 10830600..10830714 1000..1114 100 <- Minus
2L 10816024..10816233 2146..2355 100 <- Minus
2L 10804266..10804626 4343..4702 98 <- Minus
2L 10804830..10804896 4276..4342 100 <- Minus
2L 10805619..10805743 4151..4275 100 <- Minus
2L 10805985..10807127 3008..4150 99 <- Minus
2L 10807291..10807624 2674..3007 100 <- Minus
2L 10812287..10812354 2606..2673 100 <- Minus
2L 10812464..10812568 2501..2605 100 <- Minus
2L 10813301..10813445 2356..2500 100 <- Minus
2L 10816963..10817144 1964..2145 100 <- Minus
2L 10818392..10818566 1789..1963 100 <- Minus
2L 10822107..10822246 1649..1788 100 <- Minus
2L 10822968..10823109 1507..1648 100 <- Minus
2L 10823761..10823852 1415..1506 100 <- Minus
2L 10825674..10825836 1252..1414 100 <- Minus
2L 10831329..10832096 232..999 100 <- Minus
2L 10837280..10837510 1..231 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:27:49 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10816963..10817144 1964..2145 100 <- Minus
arm_2L 10818392..10818566 1789..1963 100 <- Minus
arm_2L 10822107..10822246 1649..1788 100 <- Minus
arm_2L 10804830..10804896 4276..4342 100 <- Minus
arm_2L 10805619..10805743 4151..4275 100 <- Minus
arm_2L 10822968..10823109 1507..1648 100 <- Minus
arm_2L 10823761..10823852 1415..1506 100 <- Minus
arm_2L 10804266..10804626 4343..4702 98 <- Minus
arm_2L 10805985..10807127 3008..4150 99 <- Minus
arm_2L 10807291..10807624 2674..3007 100 <- Minus
arm_2L 10812287..10812354 2606..2673 100 <- Minus
arm_2L 10812464..10812568 2501..2605 100 <- Minus
arm_2L 10813301..10813445 2356..2500 100 <- Minus
arm_2L 10816024..10816233 2146..2355 100 <- Minus
arm_2L 10825674..10825836 1252..1414 100 <- Minus
arm_2L 10825949..10826085 1115..1251 100 <- Minus
arm_2L 10830600..10830714 1000..1114 100 <- Minus
arm_2L 10831329..10832096 232..999 100 <- Minus
arm_2L 10837280..10837510 1..231 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:28 Download gff for RE15336.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10825949..10826085 1115..1251 100 <- Minus
2L 10830600..10830714 1000..1114 100 <- Minus
2L 10816024..10816233 2146..2355 100 <- Minus
2L 10816963..10817144 1964..2145 100 <- Minus
2L 10818392..10818566 1789..1963 100 <- Minus
2L 10822107..10822246 1649..1788 100 <- Minus
2L 10822968..10823109 1507..1648 100 <- Minus
2L 10823761..10823852 1415..1506 100 <- Minus
2L 10825674..10825836 1252..1414 100 <- Minus
2L 10804266..10804626 4343..4702 98 <- Minus
2L 10804830..10804896 4276..4342 100 <- Minus
2L 10805619..10805743 4151..4275 100 <- Minus
2L 10805985..10807127 3008..4150 99 <- Minus
2L 10807291..10807624 2674..3007 100 <- Minus
2L 10812287..10812354 2606..2673 100 <- Minus
2L 10812464..10812568 2501..2605 100 <- Minus
2L 10813301..10813445 2356..2500 100 <- Minus
2L 10831329..10832096 232..999 100 <- Minus
2L 10837280..10837510 1..231 100   Minus

RE15336.pep Sequence

Translation from 400 to 4449

> RE15336.pep
MSQHFTSIFENLRFVTIKRSTNAQQQQQQQQQQLQQQQQQLQQQKAQTQQ
QNSRKIKTQATPTLNGNGLLSGNPNGGGGDSSPSHEVDHPGGAQGAQAAG
GLPSSSGTPLRHHKRASISTASPPIRERRGTNTSIVVELDGSGSGSGSGG
GGVGVGQGAGCPPSGSCTASGKSSRELSPSPKNQQQPRKMSQDYRSRAGS
FMHLDDEGRSLLMRKPMRLKNIEGRPEVYDTLHCKGREILSCSKATCTSS
IMNIGNAAVEARKSDLILEHAKDFLEQYFTSIKRTSSTAHETRWKQVRQS
IETTGHYQLTETELIYGAKLAWRNSSRCIGRIQWSKLQVFDCRYVTTTSG
MFEAICNHIKYATNKGNLRSAITIFPQRTDAKHDYRIWNNQLISYAGYKQ
ADGKIIGDPMNVEFTEVCTKLGWKSKGSEWDILPLVVSANGHDPDYFDYP
PELILEVPLTHPKFEWFSDLGLRWYALPAVSSMLFDVGGIQFTATTFSGW
YMSTEIGSRNLCDTNRRNMLETVALKMQLDTRTPTSLWKDKAVVEMNIAV
LHSYQSRNVTIVDHHTASESFMKHFENESKLRNGCPADWIWIVPPLSGSI
TPVFHQEMALYYLKPSFEYQDPAWRTHVWKKGRGESKGKKPRRKFNFKQI
ARAVKFTSKLFGRALSKRIKATVLYATETGKSEQYAKQLCELLGHAFNAQ
IYCMSDYDISSIEHEALLIVVASTFGNGDPPENGELFSQELYAMRVQESS
EHGLQDSSIGSSKSFMKASSRQEFMKLPLQQVKRIDRWDSLRGSTSDTFT
EETFGPLSNVRFAVFALGSSAYPNFCAFGQYVDNILGELGGERLLRVAYG
DEMCGQEQSFRKWAPEVFKLACETFCLDPEESLSDASLALQNDSLTVNTV
RLVPSANKGSLDSSLSKYHNKKVHCCKAKAKPHNLTRLSEGAKTTMLLEI
CAPGLEYEPGDHVGIFPANRTELVDGLLNRLVGVDNPDEVLQLQLLKEKQ
TSNGIFKCWEPHDKIPPDTLRNLLARFFDLTTPPSRQLLTLLAGFCEDTA
DKERLELLVNDSSAYEDWRHWRLPHLLDVLEEFPSCRPPAPLLLAQLTPL
QPRFYSISSSPRRVSDEIHLTVAIVKYRCEDGQGDERYGVCSNYLSGLRA
DDELFMFVRSALGFHLPSDRSRPIILIGPGTGIAPFRSFWQEFQVLSDLD
PTAKLPKMWLFFGCRNRDVDLYAEEKAELQKDQILDRVFLALSREQAIPK
TYVQDLIEQEFDSLYQLIVQERGHIYVCGDVTMAEHVYQTIRKCIAGKEQ
KSEAEVETFLLTLRDESRYHEDIFGITLRTAEIHTKSRATARIRMASQP*

RE15336.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14065-PA 1356 GF14065-PA 1..1356 1..1349 6526 91.8 Plus
Dana\GF14516-PA 678 GF14516-PA 166..677 807..1324 580 30.6 Plus
Dana\GF24397-PA 582 GF24397-PA 1..582 669..1325 363 25.4 Plus
Dana\GF18497-PA 466 GF18497-PA 85..465 941..1324 339 28.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10354-PA 1341 GG10354-PA 1..1341 1..1349 7057 97 Plus
Dere\GG10405-PA 679 GG10405-PA 167..678 807..1324 581 30.6 Plus
Dere\GG14311-PA 582 GG14311-PA 1..544 669..1280 333 26 Plus
Dere\GG17003-PA 454 GG17003-PA 88..453 955..1324 307 26.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13337-PA 1359 GH13337-PA 1..1359 1..1349 6292 87.1 Plus
Dgri\GH10739-PA 683 GH10739-PA 170..682 807..1324 584 30.8 Plus
Dgri\GH15063-PA 576 GH15063-PA 1..537 669..1279 350 24.5 Plus
Dgri\GH19344-PA 472 GH19344-PA 105..471 956..1324 283 27.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
Nos-PA 1349 CG6713-PA 1..1349 1..1349 7102 100 Plus
Nos-PK 1098 CG6713-PK 1..1098 252..1349 5798 100 Plus
Nos-PF 756 CG6713-PF 1..736 1..736 3895 99.9 Plus
Cpr-PD 679 CG11567-PD 167..678 807..1324 579 30.8 Plus
Cpr-PC 679 CG11567-PC 167..678 807..1324 579 30.8 Plus
Cpr-PA 679 CG11567-PA 167..678 807..1324 579 30.8 Plus
Cpr-PB 550 CG11567-PB 41..549 810..1324 566 30.4 Plus
CG14882-PB 454 CG14882-PB 67..453 935..1324 376 28.2 Plus
CG14882-PA 454 CG14882-PA 67..453 935..1324 376 28.2 Plus
CG13667-PB 582 CG13667-PB 1..544 669..1280 300 24.8 Plus
CG13667-PA 582 CG13667-PA 1..544 669..1280 300 24.8 Plus
Smr-PF 3601 CG4013-PF 332..496 19..185 165 33.1 Plus
Smr-PE 3601 CG4013-PE 332..496 19..185 165 33.1 Plus
Smr-PD 3601 CG4013-PD 332..496 19..185 165 33.1 Plus
Smr-PG 3607 CG4013-PG 338..502 19..185 165 33.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17812-PA 1367 GI17812-PA 1..1367 1..1349 6285 87.1 Plus
Dmoj\GI11531-PA 682 GI11531-PA 170..681 807..1324 575 30.6 Plus
Dmoj\GI12831-PA 578 GI12831-PA 84..539 807..1279 329 27.2 Plus
Dmoj\GI22554-PA 473 GI22554-PA 107..472 954..1324 263 28.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26383-PA 1121 GL26383-PA 1..1088 1..1087 5059 87.3 Plus
Dper\GL20528-PA 194 GL20528-PA 1..194 1156..1349 946 90.2 Plus
Dper\GL25521-PA 679 GL25521-PA 167..678 807..1324 572 30.5 Plus
Dper\GL24703-PA 583 GL24703-PA 1..545 669..1280 331 25.5 Plus
Dper\GL21608-PA 452 GL21608-PA 90..451 955..1324 294 26.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19805-PA 1348 GA19805-PA 1..1348 1..1349 6337 88.3 Plus
Dpse\GA11069-PA 679 GA11069-PA 167..678 807..1324 572 30.5 Plus
Dpse\GA13319-PA 452 GA13319-PA 90..451 955..1324 294 26.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11413-PA 1382 GM11413-PA 1..1382 1..1349 7147 96.3 Plus
Dsec\GM18621-PA 679 GM18621-PA 167..678 807..1324 582 30.6 Plus
Dsec\GM15156-PA 454 GM15156-PA 88..453 955..1324 376 28.6 Plus
Dsec\GM25053-PA 582 GM25053-PA 1..582 669..1325 314 25.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22223-PA 1130 GD22223-PA 1..739 1..735 3202 88.1 Plus
Dsim\GD22223-PA 1130 GD22223-PA 739..1130 958..1349 2114 99.5 Plus
Dsim\GD23403-PA 679 GD23403-PA 167..678 807..1324 577 30.6 Plus
Dsim\GD19100-PA 454 GD19100-PA 88..453 955..1324 371 28.1 Plus
Dsim\GD14092-PA 521 GD14092-PA 231..521 1025..1325 284 32.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17639-PA 1370 GJ17639-PA 1..1370 1..1349 6234 86.4 Plus
Dvir\GJ12806-PA 685 GJ12806-PA 172..684 807..1324 570 30.4 Plus
Dvir\GJ12973-PA 577 GJ12973-PA 1..538 669..1279 313 25 Plus
Dvir\GJ23743-PA 473 GJ23743-PA 109..472 956..1324 289 28.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23979-PA 1356 GK23979-PA 1..1356 1..1349 6336 87 Plus
Dwil\GK14755-PA 681 GK14755-PA 168..680 807..1324 565 30 Plus
Dwil\GK13220-PA 461 GK13220-PA 57..460 904..1324 287 26.8 Plus
Dwil\GK10860-PA 584 GK10860-PA 84..545 807..1279 265 25.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13295-PA 1347 GE13295-PA 1..1347 1..1349 7090 97.3 Plus
Dyak\GE13802-PA 679 GE13802-PA 167..678 807..1324 583 30.8 Plus
Dyak\GE24396-PA 454 GE24396-PA 88..453 955..1324 316 27.9 Plus
Dyak\GE20740-PA 582 GE20740-PA 1..544 669..1280 312 25.1 Plus

RE15336.hyp Sequence

Translation from 400 to 4449

> RE15336.hyp
MSQHFTSIFENLRFVTIKRSTNAQQQQQQQQQQLQQQQQQLQQQKAQTQQ
QNSRKIKTQATPTLNGNGLLSGNPNGGGGDSSPSHEVDHPGGAQGAQAAG
GLPSSSGTPLRHHKRASISTASPPIRERRGTNTSIVVELDGSGSGSGSGG
GGVGVGQGAGCPPSGSCTASGKSSRELSPSPKNQQQPRKMSQDYRSRAGS
FMHLDDEGRSLLMRKPMRLKNIEGRPEVYDTLHCKGREILSCSKATCTSS
IMNIGNAAVEARKSDLILEHAKDFLEQYFTSIKRTSSTAHETRWKQVRQS
IETTGHYQLTETELIYGAKLAWRNSSRCIGRIQWSKLQVFDCRYVTTTSG
MFEAICNHIKYATNKGNLRSAITIFPQRTDAKHDYRIWNNQLISYAGYKQ
ADGKIIGDPMNVEFTEVCTKLGWKSKGSEWDILPLVVSANGHDPDYFDYP
PELILEVPLTHPKFEWFSDLGLRWYALPAVSSMLFDVGGIQFTATTFSGW
YMSTEIGSRNLCDTNRRNMLETVALKMQLDTRTPTSLWKDKAVVEMNIAV
LHSYQSRNVTIVDHHTASESFMKHFENESKLRNGCPADWIWIVPPLSGSI
TPVFHQEMALYYLKPSFEYQDPAWRTHVWKKGRGESKGKKPRRKFNFKQI
ARAVKFTSKLFGRALSKRIKATVLYATETGKSEQYAKQLCELLGHAFNAQ
IYCMSDYDISSIEHEALLIVVASTFGNGDPPENGELFSQELYAMRVQESS
EHGLQDSSIGSSKSFMKASSRQEFMKLPLQQVKRIDRWDSLRGSTSDTFT
EETFGPLSNVRFAVFALGSSAYPNFCAFGQYVDNILGELGGERLLRVAYG
DEMCGQEQSFRKWAPEVFKLACETFCLDPEESLSDASLALQNDSLTVNTV
RLVPSANKGSLDSSLSKYHNKKVHCCKAKAKPHNLTRLSEGAKTTMLLEI
CAPGLEYEPGDHVGIFPANRTELVDGLLNRLVGVDNPDEVLQLQLLKEKQ
TSNGIFKCWEPHDKIPPDTLRNLLARFFDLTTPPSRQLLTLLAGFCEDTA
DKERLELLVNDSSAYEDWRHWRLPHLLDVLEEFPSCRPPAPLLLAQLTPL
QPRFYSISSSPRRVSDEIHLTVAIVKYRCEDGQGDERYGVCSNYLSGLRA
DDELFMFVRSALGFHLPSDRSRPIILIGPGTGIAPFRSFWQEFQVLSDLD
PTAKLPKMWLFFGCRNRDVDLYAEEKAELQKDQILDRVFLALSREQAIPK
TYVQDLIEQEFDSLYQLIVQERGHIYVCGDVTMAEHVYQTIRKCIAGKEQ
KSEAEVETFLLTLRDESRYHEDIFGITLRTAEIHTKSRATARIRMASQP*

RE15336.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Nos-PA 1349 CG6713-PA 1..1349 1..1349 7102 100 Plus
Nos-PK 1098 CG6713-PK 1..1098 252..1349 5798 100 Plus
Nos-PF 756 CG6713-PF 1..736 1..736 3895 99.9 Plus
Cpr-PD 679 CG11567-PD 167..678 807..1324 579 30.8 Plus
Cpr-PC 679 CG11567-PC 167..678 807..1324 579 30.8 Plus