Clone RE15376 Report

Search the DGRC for RE15376

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:153
Well:76
Vector:pFlc-1
Associated Gene/TranscriptCG16890-RB
Protein status:RE15376.pep: wuzgold
Sequenced Size:1246

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16890 2003-01-01 Sim4 clustering to Release 3
CG16890 2004-12-16 Blastp of sequenced clone
CG16890 2008-04-29 Release 5.5 accounting
CG16890 2008-08-15 Release 5.9 accounting
CG16890 2008-12-18 5.12 accounting

Clone Sequence Records

RE15376.complete Sequence

1246 bp (1246 high quality bases) assembled on 2004-12-16

GenBank Submission: BT021309

> RE15376.complete
ATTATAAATTTTTTATCATAATGAGCGGCTCGCAATTATTCCCAGTGAAT
CTGAACAACCTGAGTGCCAAGGAGCGACACAACTATATACTTAGTAATTA
CGTGCTTAACCTACCGAATGAGACGGAATCACGTCGGCACAAGCGAGACA
TCGATGTAATCCGAGAGAATCACCGCTTCCTGTGGGAGGACGACGAGTTG
GATAGCGACACCCTAAGCTGGGAGCAGCGCTTGGCCCTGCGATACTACAG
GAAGCTATTTAAGGAGTACTGCATCGCGGACCTGTCCCGCTACAAGGAGA
ACAAGATAGCGCTGCGCTGGCGAACGGAGCAGGAGGTGGTCACCGGAACC
GGGCAGTTCCAGTGCGGCAGCCGGCATTGCGGGGAGCGGGATAATCTGCG
CAGCTGGGAGGTAAACTTTAGGTATATCGAAAAGGGTGAGCCCCTAAATG
CGCTGGTCAAGGTGGGTTCCAAATGGGTTTCCGCGATTGTGTCACTAATG
GGAATTCCATAGGTGCGGCTGTGTCCCACCCACACGGATCAGCTGAACTA
CCGCACCAAGAAGAGAGAATGCAAGAAGCGGAGACGCAGGGAAAAGGAGG
AACGGCGCGCTGAAAAGAAACGTAAGCGTCGAAAACTCGATGTTGGTCAC
GAAAGTTCTGGCGAAGAGGAGGAGGAGCCTGTCGAACCAGCATCCGAATC
CCATCCAGAAGCCAGCAAGGAGCCCACAGACTCAAAGGATGCCACCACGG
CAGACGAACAGATCTGGCAACAACAACCCGATATAAGCCGAGAGCAAGCC
TCCAGAGAGCAGGAATTCGAGCGATATCTAGAGGATCTCATTTTTTAAAA
TACATAGCACATTTATTTGGATTCAACGTAGACACTAGTGCTCTTTTTTA
TAGTTACTGGCCGCTAGATGCGTTCGCTTACGAACTACGATGTACATGTA
CACTCACATTTACAGGATTATTCACAAGAACTGCGTGTTAAAACCGACAC
CAAATCTAAAGTTGAACTGGACATTAAGGCTGTGACTCTGATTGATTTTT
GGAAACATTTCCGAATGGCTACATTTCAGGCATGCACCTAGTTCAATCGC
TATTTCTATATCCATCGAATGCAAATCGAAGGTTCGAAAATACAATACTA
TTTCACCTTACGTTTGTGGTCAAAACAAATTGTTGAAATCCAGCCACTGA
AGAGTTTCTAAATATAAATCGCTCTAGAACAAAAAAAAAAAAAAAA

RE15376.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890.a 1089 CG16890.a 479..1089 511..1121 3055 100 Plus
CG16890-RB 611 CG16890-RB 1..611 1..611 3055 100 Plus
CG16890.a 1089 CG16890.a 20..483 1..464 2320 100 Plus
CG16890-RA 952 CG16890-RA 41..504 1..464 2320 100 Plus
CG16890-RA 952 CG16890-RA 500..952 511..963 2265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13780941..13782169 1229..1 6115 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13782225..13783457 1233..1 6150 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13782225..13783457 1233..1 6150 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 03:09:54 has no hits.

RE15376.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:10:52 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13780940..13782169 1..1230 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:17 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RB 1..492 21..512 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:22 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RB 1..492 21..512 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:42:59 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 1..444 21..464 100 == Plus
CG16890-RA 445..777 516..848 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:16 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RB 1..492 21..512 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:32:52 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RA 445..777 516..848 100   Plus
CG16890-RA 1..444 21..464 100 == Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:23:37 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RB 1..611 1..611 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:22 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RB 1..611 1..611 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:42:59 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RD 53..465 45..457 100 == Plus
CG16890-RD 466..1184 508..1227 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:16 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RB 1..611 1..611 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:32:52 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
CG16890-RD 53..465 45..457 100 == Plus
CG16890-RD 466..1184 508..1227 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:52 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13782228..13783457 1..1230 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:52 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13782228..13783457 1..1230 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:52 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13782228..13783457 1..1230 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:42:59 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13782228..13783457 1..1230 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:43 Download gff for RE15376.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13782228..13783457 1..1230 99   Minus

RE15376.hyp Sequence

Translation from 2 to 511

> RE15376.hyp
YKFFIIMSGSQLFPVNLNNLSAKERHNYILSNYVLNLPNETESRRHKRDI
DVIRENHRFLWEDDELDSDTLSWEQRLALRYYRKLFKEYCIADLSRYKEN
KIALRWRTEQEVVTGTGQFQCGSRHCGERDNLRSWEVNFRYIEKGEPLNA
LVKVGSKWVSAIVSLMGIP*

RE15376.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-PC 258 CG16890-PC 1..148 7..154 793 100 Plus
CG16890-PA 258 CG16890-PA 1..148 7..154 793 100 Plus
CG16890-PD 248 CG16890-PD 1..138 17..154 740 99.3 Plus

RE15376.pep Sequence

Translation from 20 to 511

> RE15376.pep
MSGSQLFPVNLNNLSAKERHNYILSNYVLNLPNETESRRHKRDIDVIREN
HRFLWEDDELDSDTLSWEQRLALRYYRKLFKEYCIADLSRYKENKIALRW
RTEQEVVTGTGQFQCGSRHCGERDNLRSWEVNFRYIEKGEPLNALVKVGS
KWVSAIVSLMGIP*

RE15376.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21691-PA 261 GF21691-PA 1..148 1..148 674 83.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10185-PA 258 GG10185-PA 1..148 1..148 749 93.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10621-PA 258 GH10621-PA 1..148 1..148 638 78.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG16890-PC 258 CG16890-PC 1..148 1..148 793 100 Plus
CG16890-PA 258 CG16890-PA 1..148 1..148 793 100 Plus
CG16890-PD 248 CG16890-PD 1..138 11..148 740 99.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19750-PA 249 GI19750-PA 1..149 1..148 610 76.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21094-PA 255 GL21094-PA 1..148 1..148 637 77.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14200-PA 255 GA14200-PA 1..148 1..148 636 77.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15125-PA 258 GM15125-PA 1..148 1..148 787 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22045-PA 258 GD22045-PA 1..148 1..148 794 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18091-PA 257 GJ18091-PA 1..148 1..148 629 77 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18198-PA 263 GK18198-PA 3..149 2..148 645 77.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11459-PA 258 GE11459-PA 1..148 1..148 770 95.9 Plus