Clone RE15383 Report

Search the DGRC for RE15383

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:153
Well:83
Vector:pFlc-1
Associated Gene/Transcriptbarr-RA
Protein status:RE15383.pep: gold
Preliminary Size:2488
Sequenced Size:2594

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10726 2002-01-01 Sim4 clustering to Release 2
CG10726 2003-01-01 Sim4 clustering to Release 3
CG10726 2004-01-20 Blastp of sequenced clone
barr 2008-04-29 Release 5.5 accounting
barr 2008-08-15 Release 5.9 accounting
barr 2008-12-18 5.12 accounting

Clone Sequence Records

RE15383.complete Sequence

2594 bp (2594 high quality bases) assembled on 2004-01-20

GenBank Submission: BT011474

> RE15383.complete
AGTCCTAAATTGCGGCGTCGTTTGAAAGAAACTGTAAACTATTACCAATA
CCAGCGCAAAAACAGAAATAGACAAAATACAATCAACAAATCATCAAAAA
ACAAAAAATTCAAAACTGTCGAATTGGGATCACAGCTATTATTAAAAGAT
GACTCTGCCCCGCTTAGAAACTCCGCTCAGGCGGTCCGCAGTAGGCAGTT
ACCAGGAGGGGGTGTCCCGCATGCTAACCCCCTTTAACGACGACGAGGCG
GAAAGGCGGGAAGCCCGACGTCGCACGCTCCTTCAGCAGCATCACCGGTC
GAGCACTCTGGAGTCCATCGAGGACAATGAGACCATCAAAAATTGCTTGG
AGCTCTACAATGGCAACAAGGTGAGCAAGGACAACGCCTGGAACCTGATG
CTCATCGATTCGTTGGCCAATTTGCTGGATCACCATCACAAGCGCATGAG
CAACTTCAAGATGGCTGGTTCCTCTTTAGAAGCCTCTTCCAAGGTTTACG
GCCTGCGTGTGGACTCCATCTACTTGGACGCCATGCGCATTTCAGCTGGC
TTGAGTGCACGAACTCTTACGGATAAGCAAATAAATGCTGCCGAGGATGA
TGATGGCCCCCAAGGTGAACAGGCTACTGGCGAGGGTCAGGACTCAGCGC
AACAGGCAGCAAAAGAAGCAGCACCGAAGCCCAAACGGCAAAAGAAACCC
ATATCCACCGTGACCAAAAACAGAGAAACGCTGAACAGCCGGCTGGATAC
GGCTCCCTTGCAGGATCCTGTGTTTGGCAAGCTGAACTCCACTGTGGGCT
CTATAAATGCTTCCAATCGTCTGATGCACAACATTCTTCCTAGTTTCGAC
TCTGAATTGCGCTTGCGTACCACCTACAATTTTTGGAACAGCGAAGAGTC
CACCGAGGAGGTCCAGGACCACACTACACTCAATGCAGAAATGGAACAAT
GGCCAGCCACATCACTTATGAGCACCAATCTTATGCGCAAACTGCTGCCA
CATGCTGAAAGGTCAAATCTGCGACCGCTGCATACGGGCTACATCATCAC
AAGTGCTCCCAATCCCAAGTCGGCAAATGAAAAGGCCGCCGAGGTAGTGC
AGGATGAAGATCATGACGAGGGTCTGGATAATGCCGACGATATGTGTGTA
AATGAGATTTCCATGGCCTTTGACATCAATGCCGAGTGTGAGCCCATGCC
GGACCTGGATGGACCACCGCCTCTGGTGCTGGAGGTGGACTCCAATGAGC
TGGAAGAGCTCACTGCCGAGGAGCAAATGGTGATCAATAATTGCCGTCGG
CTACGTAAGCAGACAGAGTTCATCGAGGATTTGCGACCGGTAGACGGGAA
TTCCAAGCTAGAGTACTCCTACAGGCCGATGGACCAGATCTCCCAGTTTT
GGGCCGGCCCCTCGCATTGGAAGTTTAAGCGGACTCGCCCGCGCAGCACT
TTCTCGCAGACCAATGGACAGGTGGACACTCAGCCTATTCGCACTCAACG
AGCGAAGAAGTCAGCGCATCTGAATGCCAACCGAAGAGCCAAGGCTTTGG
ACTATGGCAATGTGACGGAAAACTTCTTCCAACAGCTGGACACCACCATA
AGGCAGCGCAAGGCGAATTTCCAAAAGAAGTGGGATCCCCGAAAGCTGAT
ATTGCCCACCAAGTTCGAATTGGACCCGGATCTTTTCTTCAAGTACGAAT
CCGCTCCCAGCATAAAGTTGTCGAAACGCGCAGGTGAACCTGATTCGGAT
GAGGGTGGAGATCTTGGCATCGATATGGATGCGGATATGCACCACGATGA
TGACAATGACCAGGAGCTATTCAACAACGAGCATTTTACCGACGCCGTTC
CCGCCAACGTGAGCGTTATTGCCGCGATTGCTGCGGAGCAAGCGGCCGAG
GCAAGCATGATGAACGTGTCCGCGGGTGAGATTGGCCTCACCCAGATGAA
CGCCACTTGCAACAACACAGTCTTCGAGATCGGCACCGAGTTCGAGGGTG
CGCCGTCGCAGGTTGCCAAAGTGATTGTTCCATTCGCGAAGAGAGCCAAG
GTTATAGACATGAAGAATCTGAAAAAGTCCTGCAACTCTCTAATACAGAA
ACAATTGCTAAACGCTGTGCCGGAGGAGACGATACCCTCGCATCCCAAGA
AAAAGGGCGAACACTATTCAAAGGGTTTCGCGAGTTTTCAGCAGGTGTAT
CAGAAGCTGCCCGACCTTTTGACCACCAAAATGTCAGACTCGCTGTCCCC
GTCGGTGGCATTCTATGCGGTTCTGCATTTGGCCAACGATTTGAAACTGC
GGCTAATTCCGCAGGAGGACTTGGAGGACTTTCAAATTCGCCAGGTGTTG
GATTGAATTTCTTTAATTATTTTTCAATTCATAGTTCTAGTTGCCCTTAA
ATGCTGTTACAATTTATTTTCACGGCTACTCCTTAATCTCTTACCTCTAT
TTTTAACTCCCAATTCGTATCAGTATTCTGAAACAGATATCCTCACCCCA
GTCGAATTTTATACACAAACGAAGCATTGTTCTGATTTAAACACTAGTTA
GTAAACAATAAATTAGGAAATATCTAAGAAAAAAAAAAAAAAAA

RE15383.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
barr-RA 2616 barr-RA 39..2616 4..2581 12890 100 Plus
barr-RB 2720 barr-RB 283..2720 144..2581 12175 99.9 Plus
barr-RB 2720 barr-RB 39..183 4..148 725 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20057159..20058713 2013..459 7760 99.9 Minus
chr2L 23010047 chr2L 20056522..20057092 2578..2008 2855 100 Minus
chr2L 23010047 chr2L 20058767..20059087 464..144 1575 99.4 Minus
chr2L 23010047 chr2L 20059187..20059330 148..4 660 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20058800..20060354 2013..459 7775 100 Minus
2L 23513712 2L 20058159..20058733 2582..2008 2875 100 Minus
2L 23513712 2L 20060408..20060728 464..144 1575 99.4 Minus
2L 23513712 2L 20060828..20060972 148..4 725 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20058800..20060354 2013..459 7775 100 Minus
2L 23513712 2L 20058159..20058733 2582..2008 2875 100 Minus
2L 23513712 2L 20060408..20060728 464..144 1575 99.3 Minus
2L 23513712 2L 20060828..20060972 148..4 725 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:43:35 has no hits.

RE15383.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:44:33 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20056522..20057088 2012..2578 100 <- Minus
chr2L 20057161..20058711 461..2011 99 <- Minus
chr2L 20058771..20059083 148..460 100 <- Minus
chr2L 20059188..20059333 1..147 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:18 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
barr-RB 1..2208 149..2356 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:41:06 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
barr-RB 1..2208 149..2356 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:11 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
barr-RA 1..2208 149..2356 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:29:55 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
barr-RB 1..2208 149..2356 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:00 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
barr-RA 1..2208 149..2356 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:50:17 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
barr-RA 1..2577 1..2577 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:41:06 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
barr-RA 1..2577 1..2577 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:11 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
barr-RA 3..2580 1..2578 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:29:56 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
barr-RA 1..2577 1..2577 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:00 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
barr-RA 3..2580 1..2578 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:33 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20058163..20058729 2012..2578 100 <- Minus
2L 20058802..20060352 461..2011 100 <- Minus
2L 20060412..20060724 148..460 100 <- Minus
2L 20060829..20060975 1..147 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:33 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20058163..20058729 2012..2578 100 <- Minus
2L 20058802..20060352 461..2011 100 <- Minus
2L 20060412..20060724 148..460 100 <- Minus
2L 20060829..20060975 1..147 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:33 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20058163..20058729 2012..2578 100 <- Minus
2L 20058802..20060352 461..2011 100 <- Minus
2L 20060412..20060724 148..460 100 <- Minus
2L 20060829..20060975 1..147 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:11 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20058163..20058729 2012..2578 100 <- Minus
arm_2L 20058802..20060352 461..2011 100 <- Minus
arm_2L 20060412..20060724 148..460 100 <- Minus
arm_2L 20060829..20060975 1..147 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:02:21 Download gff for RE15383.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20058163..20058729 2012..2578 100 <- Minus
2L 20058802..20060352 461..2011 100 <- Minus
2L 20060412..20060724 148..460 100 <- Minus
2L 20060829..20060975 1..147 99   Minus

RE15383.pep Sequence

Translation from 148 to 2355

> RE15383.pep
MTLPRLETPLRRSAVGSYQEGVSRMLTPFNDDEAERREARRRTLLQQHHR
SSTLESIEDNETIKNCLELYNGNKVSKDNAWNLMLIDSLANLLDHHHKRM
SNFKMAGSSLEASSKVYGLRVDSIYLDAMRISAGLSARTLTDKQINAAED
DDGPQGEQATGEGQDSAQQAAKEAAPKPKRQKKPISTVTKNRETLNSRLD
TAPLQDPVFGKLNSTVGSINASNRLMHNILPSFDSELRLRTTYNFWNSEE
STEEVQDHTTLNAEMEQWPATSLMSTNLMRKLLPHAERSNLRPLHTGYII
TSAPNPKSANEKAAEVVQDEDHDEGLDNADDMCVNEISMAFDINAECEPM
PDLDGPPPLVLEVDSNELEELTAEEQMVINNCRRLRKQTEFIEDLRPVDG
NSKLEYSYRPMDQISQFWAGPSHWKFKRTRPRSTFSQTNGQVDTQPIRTQ
RAKKSAHLNANRRAKALDYGNVTENFFQQLDTTIRQRKANFQKKWDPRKL
ILPTKFELDPDLFFKYESAPSIKLSKRAGEPDSDEGGDLGIDMDADMHHD
DDNDQELFNNEHFTDAVPANVSVIAAIAAEQAAEASMMNVSAGEIGLTQM
NATCNNTVFEIGTEFEGAPSQVAKVIVPFAKRAKVIDMKNLKKSCNSLIQ
KQLLNAVPEETIPSHPKKKGEHYSKGFASFQQVYQKLPDLLTTKMSDSLS
PSVAFYAVLHLANDLKLRLIPQEDLEDFQIRQVLD*

RE15383.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15460-PA 742 GF15460-PA 1..742 1..735 2787 72.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21594-PA 735 GG21594-PA 1..735 1..735 3394 91.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13243-PA 750 GH13243-PA 1..748 1..733 2097 60.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
barr-PC 735 CG10726-PC 1..735 1..735 3799 100 Plus
barr-PB 735 CG10726-PB 1..735 1..735 3799 100 Plus
barr-PA 735 CG10726-PA 1..735 1..735 3799 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17284-PA 747 GI17284-PA 1..747 1..735 1924 58.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26676-PA 692 GL26676-PA 1..692 1..688 2060 61.8 Plus
Dper\GL26679-PA 709 GL26679-PA 1..706 1..735 1919 55.8 Plus
Dper\GL26339-PA 694 GL26339-PA 1..688 1..722 1860 55.3 Plus
Dper\GL26677-PA 618 GL26677-PA 1..615 93..735 1690 56.4 Plus
Dper\GL22368-PA 249 GL22368-PA 6..246 493..735 657 58 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10526-PA 738 GA10526-PA 1..738 1..735 2334 64.3 Plus
Dpse\GA27889-PA 721 GA27889-PA 1..718 1..735 2075 57.6 Plus
Dpse\GA27888-PA 661 GA27888-PA 1..653 1..682 1787 55.3 Plus
Dpse\GA27887-PA 654 GA27887-PA 7..651 83..735 1731 55.2 Plus
Dpse\GA23749-PA 664 GA23749-PA 1..661 26..735 1613 48.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16969-PA 726 GM16969-PA 1..726 1..735 3641 93.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21719-PA 809 GD21719-PA 179..809 103..735 3280 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17893-PA 753 GJ17893-PA 1..751 1..733 2151 61.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18686-PA 773 GK18686-PA 1..766 1..735 2082 58.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12613-PA 735 GE12613-PA 1..735 1..735 3558 93.1 Plus

RE15383.hyp Sequence

Translation from 148 to 2355

> RE15383.hyp
MTLPRLETPLRRSAVGSYQEGVSRMLTPFNDDEAERREARRRTLLQQHHR
SSTLESIEDNETIKNCLELYNGNKVSKDNAWNLMLIDSLANLLDHHHKRM
SNFKMAGSSLEASSKVYGLRVDSIYLDAMRISAGLSARTLTDKQINAAED
DDGPQGEQATGEGQDSAQQAAKEAAPKPKRQKKPISTVTKNRETLNSRLD
TAPLQDPVFGKLNSTVGSINASNRLMHNILPSFDSELRLRTTYNFWNSEE
STEEVQDHTTLNAEMEQWPATSLMSTNLMRKLLPHAERSNLRPLHTGYII
TSAPNPKSANEKAAEVVQDEDHDEGLDNADDMCVNEISMAFDINAECEPM
PDLDGPPPLVLEVDSNELEELTAEEQMVINNCRRLRKQTEFIEDLRPVDG
NSKLEYSYRPMDQISQFWAGPSHWKFKRTRPRSTFSQTNGQVDTQPIRTQ
RAKKSAHLNANRRAKALDYGNVTENFFQQLDTTIRQRKANFQKKWDPRKL
ILPTKFELDPDLFFKYESAPSIKLSKRAGEPDSDEGGDLGIDMDADMHHD
DDNDQELFNNEHFTDAVPANVSVIAAIAAEQAAEASMMNVSAGEIGLTQM
NATCNNTVFEIGTEFEGAPSQVAKVIVPFAKRAKVIDMKNLKKSCNSLIQ
KQLLNAVPEETIPSHPKKKGEHYSKGFASFQQVYQKLPDLLTTKMSDSLS
PSVAFYAVLHLANDLKLRLIPQEDLEDFQIRQVLD*

RE15383.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
barr-PC 735 CG10726-PC 1..735 1..735 3799 100 Plus
barr-PB 735 CG10726-PB 1..735 1..735 3799 100 Plus
barr-PA 735 CG10726-PA 1..735 1..735 3799 100 Plus