BDGP Sequence Production Resources |
Search the DGRC for RE15383
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 153 |
Well: | 83 |
Vector: | pFlc-1 |
Associated Gene/Transcript | barr-RA |
Protein status: | RE15383.pep: gold |
Preliminary Size: | 2488 |
Sequenced Size: | 2594 |
Gene | Date | Evidence |
---|---|---|
CG10726 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10726 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10726 | 2004-01-20 | Blastp of sequenced clone |
barr | 2008-04-29 | Release 5.5 accounting |
barr | 2008-08-15 | Release 5.9 accounting |
barr | 2008-12-18 | 5.12 accounting |
2594 bp (2594 high quality bases) assembled on 2004-01-20
GenBank Submission: BT011474
> RE15383.complete AGTCCTAAATTGCGGCGTCGTTTGAAAGAAACTGTAAACTATTACCAATA CCAGCGCAAAAACAGAAATAGACAAAATACAATCAACAAATCATCAAAAA ACAAAAAATTCAAAACTGTCGAATTGGGATCACAGCTATTATTAAAAGAT GACTCTGCCCCGCTTAGAAACTCCGCTCAGGCGGTCCGCAGTAGGCAGTT ACCAGGAGGGGGTGTCCCGCATGCTAACCCCCTTTAACGACGACGAGGCG GAAAGGCGGGAAGCCCGACGTCGCACGCTCCTTCAGCAGCATCACCGGTC GAGCACTCTGGAGTCCATCGAGGACAATGAGACCATCAAAAATTGCTTGG AGCTCTACAATGGCAACAAGGTGAGCAAGGACAACGCCTGGAACCTGATG CTCATCGATTCGTTGGCCAATTTGCTGGATCACCATCACAAGCGCATGAG CAACTTCAAGATGGCTGGTTCCTCTTTAGAAGCCTCTTCCAAGGTTTACG GCCTGCGTGTGGACTCCATCTACTTGGACGCCATGCGCATTTCAGCTGGC TTGAGTGCACGAACTCTTACGGATAAGCAAATAAATGCTGCCGAGGATGA TGATGGCCCCCAAGGTGAACAGGCTACTGGCGAGGGTCAGGACTCAGCGC AACAGGCAGCAAAAGAAGCAGCACCGAAGCCCAAACGGCAAAAGAAACCC ATATCCACCGTGACCAAAAACAGAGAAACGCTGAACAGCCGGCTGGATAC GGCTCCCTTGCAGGATCCTGTGTTTGGCAAGCTGAACTCCACTGTGGGCT CTATAAATGCTTCCAATCGTCTGATGCACAACATTCTTCCTAGTTTCGAC TCTGAATTGCGCTTGCGTACCACCTACAATTTTTGGAACAGCGAAGAGTC CACCGAGGAGGTCCAGGACCACACTACACTCAATGCAGAAATGGAACAAT GGCCAGCCACATCACTTATGAGCACCAATCTTATGCGCAAACTGCTGCCA CATGCTGAAAGGTCAAATCTGCGACCGCTGCATACGGGCTACATCATCAC AAGTGCTCCCAATCCCAAGTCGGCAAATGAAAAGGCCGCCGAGGTAGTGC AGGATGAAGATCATGACGAGGGTCTGGATAATGCCGACGATATGTGTGTA AATGAGATTTCCATGGCCTTTGACATCAATGCCGAGTGTGAGCCCATGCC GGACCTGGATGGACCACCGCCTCTGGTGCTGGAGGTGGACTCCAATGAGC TGGAAGAGCTCACTGCCGAGGAGCAAATGGTGATCAATAATTGCCGTCGG CTACGTAAGCAGACAGAGTTCATCGAGGATTTGCGACCGGTAGACGGGAA TTCCAAGCTAGAGTACTCCTACAGGCCGATGGACCAGATCTCCCAGTTTT GGGCCGGCCCCTCGCATTGGAAGTTTAAGCGGACTCGCCCGCGCAGCACT TTCTCGCAGACCAATGGACAGGTGGACACTCAGCCTATTCGCACTCAACG AGCGAAGAAGTCAGCGCATCTGAATGCCAACCGAAGAGCCAAGGCTTTGG ACTATGGCAATGTGACGGAAAACTTCTTCCAACAGCTGGACACCACCATA AGGCAGCGCAAGGCGAATTTCCAAAAGAAGTGGGATCCCCGAAAGCTGAT ATTGCCCACCAAGTTCGAATTGGACCCGGATCTTTTCTTCAAGTACGAAT CCGCTCCCAGCATAAAGTTGTCGAAACGCGCAGGTGAACCTGATTCGGAT GAGGGTGGAGATCTTGGCATCGATATGGATGCGGATATGCACCACGATGA TGACAATGACCAGGAGCTATTCAACAACGAGCATTTTACCGACGCCGTTC CCGCCAACGTGAGCGTTATTGCCGCGATTGCTGCGGAGCAAGCGGCCGAG GCAAGCATGATGAACGTGTCCGCGGGTGAGATTGGCCTCACCCAGATGAA CGCCACTTGCAACAACACAGTCTTCGAGATCGGCACCGAGTTCGAGGGTG CGCCGTCGCAGGTTGCCAAAGTGATTGTTCCATTCGCGAAGAGAGCCAAG GTTATAGACATGAAGAATCTGAAAAAGTCCTGCAACTCTCTAATACAGAA ACAATTGCTAAACGCTGTGCCGGAGGAGACGATACCCTCGCATCCCAAGA AAAAGGGCGAACACTATTCAAAGGGTTTCGCGAGTTTTCAGCAGGTGTAT CAGAAGCTGCCCGACCTTTTGACCACCAAAATGTCAGACTCGCTGTCCCC GTCGGTGGCATTCTATGCGGTTCTGCATTTGGCCAACGATTTGAAACTGC GGCTAATTCCGCAGGAGGACTTGGAGGACTTTCAAATTCGCCAGGTGTTG GATTGAATTTCTTTAATTATTTTTCAATTCATAGTTCTAGTTGCCCTTAA ATGCTGTTACAATTTATTTTCACGGCTACTCCTTAATCTCTTACCTCTAT TTTTAACTCCCAATTCGTATCAGTATTCTGAAACAGATATCCTCACCCCA GTCGAATTTTATACACAAACGAAGCATTGTTCTGATTTAAACACTAGTTA GTAAACAATAAATTAGGAAATATCTAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 20057159..20058713 | 2013..459 | 7760 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 20056522..20057092 | 2578..2008 | 2855 | 100 | Minus |
chr2L | 23010047 | chr2L | 20058767..20059087 | 464..144 | 1575 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 20059187..20059330 | 148..4 | 660 | 98.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 20058800..20060354 | 2013..459 | 7775 | 100 | Minus |
2L | 23513712 | 2L | 20058159..20058733 | 2582..2008 | 2875 | 100 | Minus |
2L | 23513712 | 2L | 20060408..20060728 | 464..144 | 1575 | 99.4 | Minus |
2L | 23513712 | 2L | 20060828..20060972 | 148..4 | 725 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 20058800..20060354 | 2013..459 | 7775 | 100 | Minus |
2L | 23513712 | 2L | 20058159..20058733 | 2582..2008 | 2875 | 100 | Minus |
2L | 23513712 | 2L | 20060408..20060728 | 464..144 | 1575 | 99.3 | Minus |
2L | 23513712 | 2L | 20060828..20060972 | 148..4 | 725 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 20056522..20057088 | 2012..2578 | 100 | <- | Minus |
chr2L | 20057161..20058711 | 461..2011 | 99 | <- | Minus |
chr2L | 20058771..20059083 | 148..460 | 100 | <- | Minus |
chr2L | 20059188..20059333 | 1..147 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
barr-RB | 1..2208 | 149..2356 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
barr-RB | 1..2208 | 149..2356 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
barr-RA | 1..2208 | 149..2356 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
barr-RB | 1..2208 | 149..2356 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
barr-RA | 1..2208 | 149..2356 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
barr-RA | 1..2577 | 1..2577 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
barr-RA | 1..2577 | 1..2577 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
barr-RA | 3..2580 | 1..2578 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
barr-RA | 1..2577 | 1..2577 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
barr-RA | 3..2580 | 1..2578 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20058163..20058729 | 2012..2578 | 100 | <- | Minus |
2L | 20058802..20060352 | 461..2011 | 100 | <- | Minus |
2L | 20060412..20060724 | 148..460 | 100 | <- | Minus |
2L | 20060829..20060975 | 1..147 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20058163..20058729 | 2012..2578 | 100 | <- | Minus |
2L | 20058802..20060352 | 461..2011 | 100 | <- | Minus |
2L | 20060412..20060724 | 148..460 | 100 | <- | Minus |
2L | 20060829..20060975 | 1..147 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20058163..20058729 | 2012..2578 | 100 | <- | Minus |
2L | 20058802..20060352 | 461..2011 | 100 | <- | Minus |
2L | 20060412..20060724 | 148..460 | 100 | <- | Minus |
2L | 20060829..20060975 | 1..147 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 20058163..20058729 | 2012..2578 | 100 | <- | Minus |
arm_2L | 20058802..20060352 | 461..2011 | 100 | <- | Minus |
arm_2L | 20060412..20060724 | 148..460 | 100 | <- | Minus |
arm_2L | 20060829..20060975 | 1..147 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20058163..20058729 | 2012..2578 | 100 | <- | Minus |
2L | 20058802..20060352 | 461..2011 | 100 | <- | Minus |
2L | 20060412..20060724 | 148..460 | 100 | <- | Minus |
2L | 20060829..20060975 | 1..147 | 99 | Minus |
Translation from 148 to 2355
> RE15383.pep MTLPRLETPLRRSAVGSYQEGVSRMLTPFNDDEAERREARRRTLLQQHHR SSTLESIEDNETIKNCLELYNGNKVSKDNAWNLMLIDSLANLLDHHHKRM SNFKMAGSSLEASSKVYGLRVDSIYLDAMRISAGLSARTLTDKQINAAED DDGPQGEQATGEGQDSAQQAAKEAAPKPKRQKKPISTVTKNRETLNSRLD TAPLQDPVFGKLNSTVGSINASNRLMHNILPSFDSELRLRTTYNFWNSEE STEEVQDHTTLNAEMEQWPATSLMSTNLMRKLLPHAERSNLRPLHTGYII TSAPNPKSANEKAAEVVQDEDHDEGLDNADDMCVNEISMAFDINAECEPM PDLDGPPPLVLEVDSNELEELTAEEQMVINNCRRLRKQTEFIEDLRPVDG NSKLEYSYRPMDQISQFWAGPSHWKFKRTRPRSTFSQTNGQVDTQPIRTQ RAKKSAHLNANRRAKALDYGNVTENFFQQLDTTIRQRKANFQKKWDPRKL ILPTKFELDPDLFFKYESAPSIKLSKRAGEPDSDEGGDLGIDMDADMHHD DDNDQELFNNEHFTDAVPANVSVIAAIAAEQAAEASMMNVSAGEIGLTQM NATCNNTVFEIGTEFEGAPSQVAKVIVPFAKRAKVIDMKNLKKSCNSLIQ KQLLNAVPEETIPSHPKKKGEHYSKGFASFQQVYQKLPDLLTTKMSDSLS PSVAFYAVLHLANDLKLRLIPQEDLEDFQIRQVLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15460-PA | 742 | GF15460-PA | 1..742 | 1..735 | 2787 | 72.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21594-PA | 735 | GG21594-PA | 1..735 | 1..735 | 3394 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13243-PA | 750 | GH13243-PA | 1..748 | 1..733 | 2097 | 60.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
barr-PC | 735 | CG10726-PC | 1..735 | 1..735 | 3799 | 100 | Plus |
barr-PB | 735 | CG10726-PB | 1..735 | 1..735 | 3799 | 100 | Plus |
barr-PA | 735 | CG10726-PA | 1..735 | 1..735 | 3799 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17284-PA | 747 | GI17284-PA | 1..747 | 1..735 | 1924 | 58.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26676-PA | 692 | GL26676-PA | 1..692 | 1..688 | 2060 | 61.8 | Plus |
Dper\GL26679-PA | 709 | GL26679-PA | 1..706 | 1..735 | 1919 | 55.8 | Plus |
Dper\GL26339-PA | 694 | GL26339-PA | 1..688 | 1..722 | 1860 | 55.3 | Plus |
Dper\GL26677-PA | 618 | GL26677-PA | 1..615 | 93..735 | 1690 | 56.4 | Plus |
Dper\GL22368-PA | 249 | GL22368-PA | 6..246 | 493..735 | 657 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10526-PA | 738 | GA10526-PA | 1..738 | 1..735 | 2334 | 64.3 | Plus |
Dpse\GA27889-PA | 721 | GA27889-PA | 1..718 | 1..735 | 2075 | 57.6 | Plus |
Dpse\GA27888-PA | 661 | GA27888-PA | 1..653 | 1..682 | 1787 | 55.3 | Plus |
Dpse\GA27887-PA | 654 | GA27887-PA | 7..651 | 83..735 | 1731 | 55.2 | Plus |
Dpse\GA23749-PA | 664 | GA23749-PA | 1..661 | 26..735 | 1613 | 48.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16969-PA | 726 | GM16969-PA | 1..726 | 1..735 | 3641 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21719-PA | 809 | GD21719-PA | 179..809 | 103..735 | 3280 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17893-PA | 753 | GJ17893-PA | 1..751 | 1..733 | 2151 | 61.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18686-PA | 773 | GK18686-PA | 1..766 | 1..735 | 2082 | 58.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12613-PA | 735 | GE12613-PA | 1..735 | 1..735 | 3558 | 93.1 | Plus |
Translation from 148 to 2355
> RE15383.hyp MTLPRLETPLRRSAVGSYQEGVSRMLTPFNDDEAERREARRRTLLQQHHR SSTLESIEDNETIKNCLELYNGNKVSKDNAWNLMLIDSLANLLDHHHKRM SNFKMAGSSLEASSKVYGLRVDSIYLDAMRISAGLSARTLTDKQINAAED DDGPQGEQATGEGQDSAQQAAKEAAPKPKRQKKPISTVTKNRETLNSRLD TAPLQDPVFGKLNSTVGSINASNRLMHNILPSFDSELRLRTTYNFWNSEE STEEVQDHTTLNAEMEQWPATSLMSTNLMRKLLPHAERSNLRPLHTGYII TSAPNPKSANEKAAEVVQDEDHDEGLDNADDMCVNEISMAFDINAECEPM PDLDGPPPLVLEVDSNELEELTAEEQMVINNCRRLRKQTEFIEDLRPVDG NSKLEYSYRPMDQISQFWAGPSHWKFKRTRPRSTFSQTNGQVDTQPIRTQ RAKKSAHLNANRRAKALDYGNVTENFFQQLDTTIRQRKANFQKKWDPRKL ILPTKFELDPDLFFKYESAPSIKLSKRAGEPDSDEGGDLGIDMDADMHHD DDNDQELFNNEHFTDAVPANVSVIAAIAAEQAAEASMMNVSAGEIGLTQM NATCNNTVFEIGTEFEGAPSQVAKVIVPFAKRAKVIDMKNLKKSCNSLIQ KQLLNAVPEETIPSHPKKKGEHYSKGFASFQQVYQKLPDLLTTKMSDSLS PSVAFYAVLHLANDLKLRLIPQEDLEDFQIRQVLD*