Clone RE15472 Report

Search the DGRC for RE15472

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:154
Well:72
Vector:pFlc-1
Associated Gene/Transcriptase-RA
Protein status:RE15472.pep: gold
Preliminary Size:1461
Sequenced Size:2446

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3258 2002-01-01 Sim4 clustering to Release 2
CG3258 2002-04-04 Blastp of sequenced clone
CG3258 2003-01-01 Sim4 clustering to Release 3
ase 2008-04-29 Release 5.5 accounting
ase 2008-08-15 Release 5.9 accounting
ase 2008-12-18 5.12 accounting

Clone Sequence Records

RE15472.complete Sequence

2446 bp (2446 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095069

> RE15472.complete
CGGTTGGGTTTGCGTTTTAGTTTGAGTTCGGAGTTTAGGGGCACGCGACA
CAGAGCGCCAGCAGCTGTCCTGATGCAAGGACACGGAAACCATATTACAT
CAGTCACCAGTTAACATTCACTCAAGAAGGACTAACTTGCTAAAAGTACA
CCCGCAATCGCCACCAGTTTTTCTCCCGCCCTCAAAAAGCCACGAATCAA
AAAACTTAATTATGGCCGCCTTAAGCTTCAGCCCATCACCTCCTCCAAAA
GAAAACCCCAAGGAAAACCCCAATCCAGGAATAAAAACCACGTTGAAACC
TTTTGGAAAGATTACCGTTCACAATGTTTTAAGTGAGAGTGGCGCCAACG
CCTTGCAACAGCATATAGCCAATCAGAACACCATTATTCGAAAGATCCGG
GACTTTGGCATGCTGGGCGCTGTTCAAAGTGCCGCAGCCAGCACAACTAA
CACCACACCCATATCCAGTCAACGGAAGAGGCCCCTGGGAGAATCCCAAA
AGCAGAACCGGCACAACCAGCAGAATCAACAGCTTAGTAAAACATCAGTG
CCTGCTAAAAAATGCAAGACCAACAAGAAGTTGGCGGTTGAAAGGCCCCC
AAAAGCAGGAACTATAAGCCACCCTCATAAAAGCCAAAGCGATCAGAGTT
TTGGGACTCCTGGAAGAAAGGGTTTGCCTTTGCCACAAGCCGTTGCCCGT
AGAAACGCTAGGGAAAGAAATCGCGTGAAGCAGGTTAACAATGGATTTGC
TTTACTCCGGGAGAAGATCCCAGAAGAAGTATCTGAGGCTTTTGAGGCCC
AGGGGGCGGGTAGAGGAGCAAGCAAGAAGCTATCCAAAGTGGAGACCCTC
CGCATGGCCGTAGAGTACATAAGAAGTTTGGAAAAACTGCTGGGATTTGA
TTTTCCACCTCTCAACAGTCAGGGGAATAGTTCTGGTTCCGGCGATGATA
GCTTTATGTTTATTAAGGACGAATTCGATTGTCTGGATGAACATTTCGAC
GACTCGCTGAGCAACTACGAAATGGATGAGCAACAGACTGTCCAACAAAC
TTTATCCGAGGATATGCTAAACCCTCCGCAAGCCAGTGATCTCCTGCCTA
GTTTGACTACATTAAATGGGTTGCAATACATCAGAATACCAGGAACCAAC
ACCTACCAACTGCTGACGACTGACTTATTGGGCGATTTGAGTCACGAGCA
AAAACTTGAAGAAACAGCTGCTTCGGGCCAGTTATCGCGATCGCCCGTGC
CACAAAAGGTGGTAAGAAGTCCCTGCTCTTCTCCAGTTTCACCTGTCGCC
TCGACTGAATTGCTGTTACAGACACAGACGTGTGCCACACCGCTGCAACA
GCAAGTAATCAAACAGGAATACGTCAGTACCAACATTAGCAGCAGCAGCA
ACGCACAGACTTCCCCGCAGCAGCAGCAGCAAGTTCAGAACCTGGGATCG
TCGCCTATTTTACCCGCGTTCTACGACCAGGAGCCCGTGAGCTTCTACGA
CAACGTAGTCCTTCCCGGATTCAAGAAGGAATTCAGCGATATTTTGCAGC
AAGATCAGCCCAACAATACAACCGCTGGCTGCCTTTCGGACGAGAGCATG
ATCGATGCCATTGACTGGTGGGAGGCACATGCACCTAAATCTAATGGTGC
ATGCACCAATCTGTCCGTTTAGCCGAATTTTTTCACATCACGCATCTCGG
AAAAGCCGATTGCATTTTTTGGCATACTTTTTAAATGATTTTAAATCCTC
ACAGCATAAGTCTGTGGCAGGCCATTCTATCTAAAGTTTTTTTTAATCAA
GCCATGACTGAGTCATTGTGTAAATATCAATTTAAGCCGAGAAAGGAGGA
TAACTTCGGCCAGCCGAAGCTTATATACCTTTGCTGTTAAAACCATGTAT
TTAATATGAAAGTTCGCACAATTTCGATGAAGTTTATCACAAATTTACGA
TTTCATCAAGATTTGTATATTCTCCAAATTCTATAAAATATATGTACATT
TTGATTCTTGCTATGGTACTTGTACGTATGATATTGTTGATCGATCCTGC
CCGAGTCACCTTTTATATCACCAGACATGCCGATCATGAATATTTATTGA
TGTGGGGTCGGAAATGCCTCACTGCTACCTTCAGACATATTATAATATCC
TCTGAAAGAGTGTGACAAAATGAATGTATGAACACTACATATTTAAAGTC
ATCTAGTGATATAAACCAAATGGAAATAACCTTGTAAGACCCAACCACAA
AATAGTTATCCTGATAAACGGCTTAATGTTGAGCCGGACTAACAGAGTGT
CTAGTATATAACAAAAATTAATGTATTTGTGTAACCATATTTTTTTTTTA
TAGATTTAATTGTAGGAACGTTAAAATGACAAGCAGATAATATATGCTTT
TGAATAAATGCAAATAAATATGAACATTTCCAAAAAAAAAAAAAAA

RE15472.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
ase-RA 2677 ase-RA 248..2677 3..2431 12110 99.9 Plus
ase.a 2617 ase.a 248..1506 3..1261 6295 100 Plus
ase.a 2617 ase.a 1506..2617 1321..2431 5520 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 354780..357209 3..2431 12085 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 460747..463181 3..2436 12125 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 468845..471279 3..2436 12135 99.9 Plus
Blast to na_te.dros performed 2019-03-16 12:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 2011..2164 513..674 141 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6832..6921 1345..1431 136 67.4 Plus

RE15472.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:44:37 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 354778..357209 1..2431 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:20 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
ase-RA 1..1461 212..1672 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:14:44 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
ase-RA 1..1461 212..1672 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:12 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
ase-RA 1..1461 212..1672 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:09 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
ase-RA 1..1461 212..1672 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:08 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
ase-RA 1..1461 212..1672 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:46:11 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
ase-RA 246..2677 1..2431 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:14:44 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
ase-RA 246..2677 1..2431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:12 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
ase-RA 1..2430 3..2431 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:09 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
ase-RA 246..2677 1..2431 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:08 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
ase-RA 1..2430 3..2431 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:37 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
X 460745..463176 1..2431 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:37 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
X 460745..463176 1..2431 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:37 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
X 460745..463176 1..2431 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:12 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 354778..357209 1..2431 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:36 Download gff for RE15472.complete
Subject Subject Range Query Range Percent Splice Strand
X 468843..471274 1..2431 99   Plus

RE15472.pep Sequence

Translation from 211 to 1671

> RE15472.pep
MAALSFSPSPPPKENPKENPNPGIKTTLKPFGKITVHNVLSESGANALQQ
HIANQNTIIRKIRDFGMLGAVQSAAASTTNTTPISSQRKRPLGESQKQNR
HNQQNQQLSKTSVPAKKCKTNKKLAVERPPKAGTISHPHKSQSDQSFGTP
GRKGLPLPQAVARRNARERNRVKQVNNGFALLREKIPEEVSEAFEAQGAG
RGASKKLSKVETLRMAVEYIRSLEKLLGFDFPPLNSQGNSSGSGDDSFMF
IKDEFDCLDEHFDDSLSNYEMDEQQTVQQTLSEDMLNPPQASDLLPSLTT
LNGLQYIRIPGTNTYQLLTTDLLGDLSHEQKLEETAASGQLSRSPVPQKV
VRSPCSSPVSPVASTELLLQTQTCATPLQQQVIKQEYVSTNISSSSNAQT
SPQQQQQVQNLGSSPILPAFYDQEPVSFYDNVVLPGFKKEFSDILQQDQP
NNTTAGCLSDESMIDAIDWWEAHAPKSNGACTNLSV*

RE15472.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21452-PA 483 GF21452-PA 1..319 1..302 926 68.7 Plus
Dana\GF21450-PA 326 GF21450-PA 76..143 159..227 222 62.3 Plus
Dana\GF21449-PA 415 GF21449-PA 26..95 160..227 212 62.9 Plus
Dana\GF21451-PA 257 GF21451-PA 96..184 172..259 180 49.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\ase-PA 484 GG12785-PA 1..484 1..486 2164 92.8 Plus
Dere\sc-PA 335 GG12783-PA 87..154 159..227 223 62.3 Plus
Dere\ac-PA 201 GG12781-PA 25..94 160..227 214 64.3 Plus
Dere\l(1)sc-PA 256 GG12784-PA 40..148 89..227 175 44.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24345-PA 574 GH24345-PA 56..567 29..478 980 54.4 Plus
Dgri\GH24340-PA 378 GH24340-PA 115..182 159..227 221 62.3 Plus
Dgri\GH24339-PA 252 GH24339-PA 57..131 155..227 218 60 Plus
Dgri\GH24341-PA 284 GH24341-PA 46..169 89..233 191 44.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
ase-PA 486 CG3258-PA 1..486 1..486 2499 100 Plus
l(1)sc-PA 257 CG3839-PA 25..167 96..247 222 40.1 Plus
sc-PA 345 CG3827-PA 69..198 130..268 210 41.4 Plus
ac-PA 201 CG3796-PA 25..94 160..227 203 64.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11000-PA 664 GI11000-PA 60..404 29..327 720 57.4 Plus
Dmoj\GI11000-PA 664 GI11000-PA 583..659 409..480 232 62.3 Plus
Dmoj\GI10998-PA 361 GI10998-PA 99..166 159..227 220 62.3 Plus
Dmoj\GI10997-PA 262 GI10997-PA 60..129 160..227 210 61.4 Plus
Dmoj\GI10999-PA 266 GI10999-PA 50..162 88..227 173 44.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20381-PA 293 GL20381-PA 1..245 1..215 604 62.9 Plus
Dper\GL20382-PA 321 GL20382-PA 223..305 405..477 264 65.5 Plus
Dper\GL20377-PA 225 GL20377-PA 29..98 160..227 216 64.3 Plus
Dper\GL20378-PA 347 GL20378-PA 102..161 167..227 190 60.7 Plus
Dper\GL20379-PA 264 GL20379-PA 74..178 150..259 189 53.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17007-PA 619 GA17007-PA 521..603 405..477 273 66.7 Plus
Dpse\GA29095-PA 371 GA29095-PA 107..174 159..227 221 62.3 Plus
Dpse\GA17691-PA 226 GA17691-PA 29..98 160..227 216 64.3 Plus
Dpse\GA17723-PA 264 GA17723-PA 74..178 150..259 189 53.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19064-PA 449 GM19064-PA 1..449 1..486 2253 89.9 Plus
Dsec\GM19062-PA 334 GM19062-PA 87..179 159..260 224 50 Plus
Dsec\GM19060-PA 201 GM19060-PA 25..94 160..227 214 64.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16504-PA 466 GD16504-PA 1..466 1..486 2374 93.2 Plus
Dsim\sc-PA 334 GD16501-PA 87..179 159..260 224 50 Plus
Dsim\l(1)sc-PA 257 GD16503-PA 79..149 154..227 170 63.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15598-PA 616 GJ15598-PA 47..359 29..323 754 58.6 Plus
Dvir\GJ15598-PA 616 GJ15598-PA 539..609 411..480 261 68.1 Plus
Dvir\sc-PA 351 GJ15596-PA 96..189 159..260 222 51 Plus
Dvir\ac-PA 220 GJ15592-PA 29..98 160..227 214 62.9 Plus
Dvir\GJ15597-PA 284 GJ15597-PA 106..159 172..227 170 60.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25272-PA 652 GK25272-PA 49..631 29..480 1037 50.6 Plus
Dwil\GK25270-PA 377 GK25270-PA 129..220 159..260 223 50.5 Plus
Dwil\GK25269-PA 236 GK25269-PA 30..99 160..227 214 64.3 Plus
Dwil\GK25271-PA 280 GK25271-PA 55..166 91..227 177 46.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ase-PA 494 GE16612-PA 1..494 1..486 2155 91.1 Plus
Dyak\sc-PA 334 GE16610-PA 87..154 159..227 223 62.3 Plus
Dyak\ac-PA 201 GE16609-PA 25..94 160..227 214 64.3 Plus
Dyak\l(1)sc-PA 256 GE16611-PA 78..148 154..227 168 63.5 Plus

RE15472.hyp Sequence

Translation from 211 to 1671

> RE15472.hyp
MAALSFSPSPPPKENPKENPNPGIKTTLKPFGKITVHNVLSESGANALQQ
HIANQNTIIRKIRDFGMLGAVQSAAASTTNTTPISSQRKRPLGESQKQNR
HNQQNQQLSKTSVPAKKCKTNKKLAVERPPKAGTISHPHKSQSDQSFGTP
GRKGLPLPQAVARRNARERNRVKQVNNGFALLREKIPEEVSEAFEAQGAG
RGASKKLSKVETLRMAVEYIRSLEKLLGFDFPPLNSQGNSSGSGDDSFMF
IKDEFDCLDEHFDDSLSNYEMDEQQTVQQTLSEDMLNPPQASDLLPSLTT
LNGLQYIRIPGTNTYQLLTTDLLGDLSHEQKLEETAASGQLSRSPVPQKV
VRSPCSSPVSPVASTELLLQTQTCATPLQQQVIKQEYVSTNISSSSNAQT
SPQQQQQVQNLGSSPILPAFYDQEPVSFYDNVVLPGFKKEFSDILQQDQP
NNTTAGCLSDESMIDAIDWWEAHAPKSNGACTNLSV*

RE15472.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
ase-PA 486 CG3258-PA 1..486 1..486 2499 100 Plus
l(1)sc-PA 257 CG3839-PA 25..167 96..247 222 40.1 Plus
sc-PA 345 CG3827-PA 69..198 130..268 210 41.4 Plus
ac-PA 201 CG3796-PA 25..94 160..227 203 64.3 Plus