Clone RE15531 Report

Search the DGRC for RE15531

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:155
Well:31
Vector:pFlc-1
Associated Gene/TranscriptCG10598-RA
Protein status:RE15531.pep: gold
Preliminary Size:724
Sequenced Size:746

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10598 2001-12-14 Blastp of sequenced clone
CG10598 2002-01-01 Sim4 clustering to Release 2
CG10598 2003-01-01 Sim4 clustering to Release 3
CG10598 2008-04-29 Release 5.5 accounting
CG10598 2008-08-15 Release 5.9 accounting
CG10598 2008-12-18 5.12 accounting

Clone Sequence Records

RE15531.complete Sequence

746 bp (746 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071088

> RE15531.complete
CGGAATTAGTTTGGTCAGCTGTTTGATACCGATTGTATCCCATTCGCTAC
TCGAGATGAAACCCTTTGCCTGCATCCTGGTGATCCTTGCCGCCATCCTG
TCCGTGGGACAGGCCTCCCTGGGCGGTCTTCTTGGCGGCGGCGGTGGAGG
CGGCGGCTCTATTGGCGGAGGCGCTGGCGGCATCGGACAGCTGCTGCAGA
GCAAGCTGGGCGGTCTCGGCGGAGGATTGGGCGGCGGCCTGGGCGGTCTG
AGCGGTGGTCTTGGCGGCAAGCTCGGCGGCGGTGGAGGCGGCGGCGGCTA
CTCCGGTGGCTACTCCAACGGTGGCGGCTACTCCGGCGGTGGTGGATACT
CCGGCGGTGGTGGATACTCCGGCGGCGGTGGCTACTCTGGCGGATATGCT
GCTCCCAGGCCCGTTGAGAAGGTTGTCATCGTGAAGGTCATTAACGAAGG
CTACTCTGGCGGTTACTCCGGCGCTCAGTCTGGTGGCTACTCCGGTGGTT
ACTCCGGCGCTCAGTCTGGTGGCTACTCTGGTGGCTATTCCGGCGCTCAG
TCCGCCGGCTGGAACAAGGGCTGGTAAATGTGGAGCAAGCCAATATGGAC
CAACTATAAATAGTTCAAACTGCCAAACCGAAAGCCAAGCAGCTTAGGAT
TTAATATTTTTTTTTTATATTTTTTAGCGGTATTTGTTTGTTAGAATTTA
TACAATATACAAGAAAAGAATTTCCATTTTAAAAAAAAAAAAAAAA

RE15531.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10598-RA 732 CG10598-RA 1..732 2..733 3660 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17115165..17115893 730..2 3615 99.7 Minus
chrX 22417052 chrX 17115379..17115446 552..485 265 92.6 Minus
chrX 22417052 chrX 17115343..17115410 516..449 250 91.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17225711..17226442 733..2 3660 100 Minus
X 23542271 X 17225892..17225959 516..449 265 92.6 Minus
X 23542271 X 17225928..17225995 552..485 265 92.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17233809..17234540 733..2 3660 100 Minus
Blast to na_te.dros performed 2019-03-16 22:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 5977..6033 706..649 107 67.2 Minus

RE15531.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed on 2019-03-16 22:30:41 has no hits.
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:23 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 1..522 56..577 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:09:11 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 1..522 56..577 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:14:53 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 1..522 56..577 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:26 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 1..522 56..577 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:57 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 1..522 56..577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:38:26 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 1..728 3..730 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:09:11 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 1..728 3..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:53 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 1..729 2..730 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:27 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 1..728 3..730 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:57 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 1..729 2..730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:41 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
X 17225714..17226442 1..730 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:41 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
X 17225714..17226442 1..730 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:41 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
X 17225714..17226442 1..730 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:53 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17119747..17120475 1..730 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:10:29 Download gff for RE15531.complete
Subject Subject Range Query Range Percent Splice Strand
X 17233812..17234540 1..730 99   Minus

RE15531.hyp Sequence

Translation from 0 to 576

> RE15531.hyp
GISLVSCLIPIVSHSLLEMKPFACILVILAAILSVGQASLGGLLGGGGGG
GGSIGGGAGGIGQLLQSKLGGLGGGLGGGLGGLSGGLGGKLGGGGGGGGY
SGGYSNGGGYSGGGGYSGGGGYSGGGGYSGGYAAPRPVEKVVIVKVINEG
YSGGYSGAQSGGYSGGYSGAQSGGYSGGYSGAQSAGWNKGW*

RE15531.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10598-PC 173 CG10598-PC 1..173 19..191 931 100 Plus
CG10598-PA 173 CG10598-PA 1..173 19..191 931 100 Plus
CG14191-PA 193 CG14191-PA 1..188 19..187 321 44.7 Plus
CG12523-PB 250 CG12523-PB 3..159 25..190 286 40.1 Plus
CG12523-PA 250 CG12523-PA 3..159 25..190 286 40.1 Plus
CG12523-PB 250 CG12523-PB 120..242 37..187 158 36.2 Plus
CG14191-PA 193 CG14191-PA 82..189 32..129 152 43.2 Plus

RE15531.pep Sequence

Translation from 55 to 576

> RE15531.pep
MKPFACILVILAAILSVGQASLGGLLGGGGGGGGSIGGGAGGIGQLLQSK
LGGLGGGLGGGLGGLSGGLGGKLGGGGGGGGYSGGYSNGGGYSGGGGYSG
GGGYSGGGGYSGGYAAPRPVEKVVIVKVINEGYSGGYSGAQSGGYSGGYS
GAQSGGYSGGYSGAQSAGWNKGW*

RE15531.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10598-PC 173 CG10598-PC 1..173 1..173 931 100 Plus
CG10598-PA 173 CG10598-PA 1..173 1..173 931 100 Plus
CG14191-PA 193 CG14191-PA 1..188 1..169 321 44.7 Plus
CG15597-PB 149 CG15597-PB 1..146 1..169 302 47.2 Plus
CG12523-PB 250 CG12523-PB 3..159 7..172 286 40.1 Plus
CG12523-PA 250 CG12523-PA 3..159 7..172 286 40.1 Plus
CG15731-PA 319 CG15731-PA 1..201 1..168 284 41.5 Plus
CG17108-PA 342 CG17108-PA 217..342 23..151 270 45.3 Plus
CG9083-PB 317 CG9083-PB 42..237 23..166 268 40.7 Plus
CG13376-PB 200 CG13376-PB 1..187 1..172 267 39 Plus
CG17108-PA 342 CG17108-PA 11..157 17..166 262 44.4 Plus
TwdlT-PA 286 CG5812-PA 27..127 30..163 262 44.4 Plus
CG17108-PA 342 CG17108-PA 98..248 18..173 261 44.7 Plus
CG5172-PD 172 CG5172-PD 9..172 4..173 260 42.3 Plus
CG13376-PD 204 CG13376-PD 8..191 4..172 258 38.5 Plus
Cpr47Ef-PD 601 CG13214-PD 343..505 18..172 258 39.5 Plus
CG17108-PA 342 CG17108-PA 173..342 23..163 257 40.2 Plus
CG17108-PA 342 CG17108-PA 206..337 22..168 257 42.7 Plus
Cpr47Ef-PD 601 CG13214-PD 236..366 23..172 256 45.8 Plus
Cpr47Ef-PC 612 CG13214-PC 236..366 23..172 256 45.8 Plus
CG17108-PA 342 CG17108-PA 3..171 7..163 255 40.1 Plus
Cpr47Ef-PD 601 CG13214-PD 265..417 23..172 254 45.5 Plus
Cpr47Ef-PD 601 CG13214-PD 232..352 25..172 254 43.2 Plus
Cpr47Ef-PC 612 CG13214-PC 232..352 25..172 254 43.2 Plus
Cpr47Ef-PC 612 CG13214-PC 265..417 23..172 254 45.5 Plus
Cpr47Ef-PC 612 CG13214-PC 343..516 18..172 253 39.5 Plus
Cpr47Ef-PD 601 CG13214-PD 299..438 18..172 251 43 Plus
Cpr47Ef-PC 612 CG13214-PC 299..438 18..172 251 43 Plus
Cpr47Ef-PD 601 CG13214-PD 322..481 18..172 250 44.2 Plus
CG13376-PC 193 CG13376-PC 3..180 17..172 248 38.3 Plus
Cpr47Ef-PC 612 CG13214-PC 310..472 18..173 248 42 Plus
CG17108-PA 342 CG17108-PA 97..243 23..163 246 44.2 Plus
Cpr47Ef-PD 601 CG13214-PD 239..374 16..168 246 42.4 Plus
Cpr47Ef-PC 612 CG13214-PC 239..374 16..168 246 42.4 Plus
Cpr47Ef-PC 612 CG13214-PC 322..486 18..172 245 41.9 Plus
Cpr47Ef-PC 612 CG13214-PC 370..550 16..172 244 40.1 Plus
Cpr47Ef-PD 601 CG13214-PD 370..539 16..172 242 39.9 Plus
CG17108-PA 342 CG17108-PA 69..221 16..168 241 43.2 Plus
TwdlT-PA 286 CG5812-PA 27..125 23..144 241 44.4 Plus
TwdlT-PA 286 CG5812-PA 33..139 18..128 241 51.7 Plus
Cpr47Ef-PD 601 CG13214-PD 310..491 18..173 240 41.6 Plus
Cpr47Ef-PD 601 CG13214-PD 405..540 18..160 239 44.7 Plus
CG9083-PB 317 CG9083-PB 157..314 11..162 238 38.7 Plus
CG17108-PA 342 CG17108-PA 137..293 23..172 236 39.5 Plus
CG13376-PC 193 CG13376-PC 48..192 7..173 231 40.7 Plus
TwdlT-PA 286 CG5812-PA 27..116 31..168 229 42 Plus
CG34327-PA 220 CG34327-PA 15..199 7..173 228 36.2 Plus
CG11458-PA 98 CG11458-PA 5..98 11..110 227 52.5 Plus
CG13376-PD 204 CG13376-PD 70..203 27..173 225 42 Plus
Ipod-PC 349 CG2961-PC 1..132 1..168 222 38.7 Plus
Ipod-PB 349 CG2961-PB 1..132 1..168 222 38.7 Plus
Ipod-PA 349 CG2961-PA 1..132 1..168 222 38.7 Plus
Edg91-PB 151 CG7539-PB 21..145 49..168 221 46.7 Plus
Edg91-PA 159 CG7539-PA 29..153 49..168 221 46.7 Plus
CG9083-PB 317 CG9083-PB 99..300 27..170 220 34.2 Plus
Fib-PA 344 CG9888-PA 5..108 18..113 220 51.9 Plus
CG10597-PB 200 CG10597-PB 1..194 1..172 219 34.4 Plus
Cpr47Ef-PD 601 CG13214-PD 439..567 23..168 212 40.4 Plus
Cpr47Ef-PC 612 CG13214-PC 435..578 18..168 210 40 Plus
Hrb87F-PE 385 CG12749-PE 201..338 18..171 210 39 Plus
Hrb87F-PD 385 CG12749-PD 201..338 18..171 210 39 Plus
Hrb87F-PC 385 CG12749-PC 201..338 18..171 210 39 Plus
Hrb87F-PA 385 CG12749-PA 201..338 18..171 210 39 Plus
CG5070-PA 209 CG5070-PA 26..121 71..167 209 50 Plus
Hrb87F-PE 385 CG12749-PE 234..383 18..171 208 39.5 Plus
Hrb87F-PD 385 CG12749-PD 234..383 18..171 208 39.5 Plus
Hrb87F-PC 385 CG12749-PC 234..383 18..171 208 39.5 Plus
Hrb87F-PA 385 CG12749-PA 234..383 18..171 208 39.5 Plus
Hrb87F-PE 385 CG12749-PE 200..325 27..168 207 39.7 Plus
Hrb87F-PD 385 CG12749-PD 200..325 27..168 207 39.7 Plus
Hrb87F-PC 385 CG12749-PC 200..325 27..168 207 39.7 Plus
Hrb87F-PA 385 CG12749-PA 200..325 27..168 207 39.7 Plus
caz-PD 355 CG3606-PD 169..306 28..172 202 39.9 Plus
caz-PC 384 CG3606-PC 198..335 28..172 202 39.9 Plus
caz-PB 399 CG3606-PB 213..350 28..172 202 39.9 Plus
CG9083-PB 317 CG9083-PB 38..232 55..173 200 33.5 Plus
CG10918-PA 183 CG10918-PA 3..108 5..119 200 45.4 Plus
CG2150-PA 188 CG2150-PA 1..174 1..169 199 35.3 Plus
CG5172-PC 106 CG5172-PC 4..91 5..109 196 48.6 Plus
caz-PD 355 CG3606-PD 184..352 18..166 196 34.2 Plus
caz-PC 384 CG3606-PC 213..381 18..166 196 34.2 Plus
caz-PB 399 CG3606-PB 228..396 18..166 196 34.2 Plus
CG5070-PA 209 CG5070-PA 8..196 5..172 195 34.6 Plus
CG8157-PB 113 CG8157-PB 1..100 1..112 194 44.7 Plus
CG8157-PA 113 CG8157-PA 1..100 1..112 194 44.7 Plus
CG9757-PB 127 CG9757-PB 50..127 23..112 194 52.2 Plus
CG9757-PA 127 CG9757-PA 50..127 23..112 194 52.2 Plus
CG7294-PA 127 CG7294-PA 1..127 1..159 194 35.8 Plus
Nopp140-PA 720 CG7421-PA 620..716 27..123 194 45.4 Plus
Nopp140-PE 773 CG7421-PE 673..769 27..123 194 45.4 Plus
Cpr47Ef-PD 601 CG13214-PD 29..120 12..119 193 49.5 Plus
Cpr47Ef-PC 612 CG13214-PC 29..120 12..119 193 49.5 Plus
Fib-PA 344 CG9888-PA 12..110 52..166 192 41.7 Plus
CG32564-PA 409 CG32564-PA 1..154 1..167 192 36.8 Plus
CG32564-PA 409 CG32564-PA 30..165 46..170 191 40.7 Plus
CG8160-PA 212 CG8160-PA 37..180 28..164 190 40.8 Plus
CG14327-PB 153 CG14327-PB 56..130 34..114 189 56.1 Plus
CG14327-PA 153 CG14327-PA 56..130 34..114 189 56.1 Plus
CG13376-PB 200 CG13376-PB 86..200 16..115 186 46.1 Plus
CG13376-PD 204 CG13376-PD 90..204 16..115 186 46.1 Plus
CG13376-PC 193 CG13376-PC 79..193 16..115 186 46.1 Plus
Cpr47Ef-PD 601 CG13214-PD 47..147 23..136 185 43 Plus
Cpr47Ef-PC 612 CG13214-PC 47..147 23..136 185 43 Plus
CG32521-PI 323 CG32521-PI 39..218 12..168 185 36.1 Plus
Cpr47Ef-PC 612 CG13214-PC 466..602 16..172 184 39.2 Plus
Fib-PA 344 CG9888-PA 11..108 55..172 184 42.4 Plus
CG11458-PA 98 CG11458-PA 3..98 4..98 183 49.5 Plus
CG14327-PB 153 CG14327-PB 40..150 4..108 183 42.7 Plus
CG14327-PA 153 CG14327-PA 40..150 4..108 183 42.7 Plus
TwdlT-PA 286 CG5812-PA 56..127 17..97 182 53.1 Plus
CG5172-PC 106 CG5172-PC 21..93 71..164 182 44.7 Plus
CG32521-PI 323 CG32521-PI 49..226 18..170 182 35.2 Plus
TwdlT-PA 286 CG5812-PA 27..109 56..173 180 38.7 Plus
Edg91-PA 159 CG7539-PA 7..158 5..159 180 38.6 Plus
CG9757-PB 127 CG9757-PB 48..127 50..151 180 43.1 Plus
CG9757-PA 127 CG9757-PA 48..127 50..151 180 43.1 Plus
CG7299-PC 177 CG7299-PC 1..169 1..170 180 31.6 Plus
CG7299-PA 177 CG7299-PA 1..169 1..170 180 31.6 Plus
sqd-PD 178 CG16901-PD 54..156 58..172 180 39 Plus
Cpr47Ef-PD 601 CG13214-PD 35..125 55..160 178 42.2 Plus
Cpr47Ef-PC 612 CG13214-PC 35..125 55..160 178 42.2 Plus
Edg91-PB 151 CG7539-PB 1..150 10..159 178 38.2 Plus
CG10918-PA 183 CG10918-PA 9..115 7..119 176 40.4 Plus
sqd-PD 178 CG16901-PD 54..167 51..168 169 36.9 Plus
CG9757-PB 127 CG9757-PB 50..127 59..163 168 42.9 Plus
CG9757-PA 127 CG9757-PA 50..127 59..163 168 42.9 Plus
CG7294-PA 127 CG7294-PA 26..123 53..172 168 39.2 Plus
CG8160-PA 212 CG8160-PA 3..161 7..163 168 36.3 Plus
sqd-PD 178 CG16901-PD 54..163 22..160 168 37.9 Plus
CG11458-PA 98 CG11458-PA 11..98 43..161 167 38.7 Plus
Fib-PA 344 CG9888-PA 10..94 70..172 165 42.3 Plus
CG8157-PB 113 CG8157-PB 21..111 55..163 165 39.8 Plus
CG8157-PA 113 CG8157-PA 21..111 55..163 165 39.8 Plus
caz-PD 355 CG3606-PD 266..354 28..119 163 46.7 Plus
caz-PC 384 CG3606-PC 295..383 28..119 163 46.7 Plus
caz-PB 399 CG3606-PB 310..398 28..119 163 46.7 Plus
CG34327-PA 220 CG34327-PA 89..215 23..156 162 36.3 Plus
CG34327-PA 220 CG34327-PA 94..219 18..115 160 38.8 Plus
CG5172-PC 106 CG5172-PC 20..91 66..156 160 42.9 Plus
CG12523-PB 250 CG12523-PB 120..242 19..169 158 36.2 Plus
CG12523-PA 250 CG12523-PA 120..242 19..169 158 36.2 Plus
CG11458-PA 98 CG11458-PA 21..98 74..173 156 39.8 Plus
Nopp140-PA 720 CG7421-PA 593..714 28..171 156 32.9 Plus
Nopp140-PE 773 CG7421-PE 646..767 28..171 156 32.9 Plus
CG5172-PC 106 CG5172-PC 12..92 6..91 155 47.1 Plus
CG5070-PA 209 CG5070-PA 86..200 27..119 154 37.2 Plus
sqd-PD 178 CG16901-PD 84..170 18..108 154 47.8 Plus
CG14191-PA 193 CG14191-PA 82..189 14..111 152 43.2 Plus
CG34327-PA 220 CG34327-PA 11..125 61..173 152 39.1 Plus
Hrb87F-PE 385 CG12749-PE 200..289 53..172 151 39.2 Plus
Hrb87F-PD 385 CG12749-PD 200..289 53..172 151 39.2 Plus
Hrb87F-PC 385 CG12749-PC 200..289 53..172 151 39.2 Plus
Hrb87F-PA 385 CG12749-PA 200..289 53..172 151 39.2 Plus
Cpr47Ef-PD 601 CG13214-PD 472..598 18..155 149 35.5 Plus
Cpr47Ef-PC 612 CG13214-PC 496..609 16..155 148 36.9 Plus
CG17108-PA 342 CG17108-PA 271..342 18..100 147 46.4 Plus
Nopp140-PA 720 CG7421-PA 635..699 21..96 147 47.4 Plus
Nopp140-PE 773 CG7421-PE 688..752 21..96 147 47.4 Plus
sqd-PD 178 CG16901-PD 89..169 29..113 146 45.9 Plus
CG32521-PI 323 CG32521-PI 175..323 13..147 145 35.5 Plus
CG8157-PB 113 CG8157-PB 23..97 74..172 141 37.4 Plus
CG8157-PA 113 CG8157-PA 23..97 74..172 141 37.4 Plus
CG5172-PC 106 CG5172-PC 18..88 87..171 138 37.6 Plus