Clone RE15573 Report

Search the DGRC for RE15573

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:155
Well:73
Vector:pFlc-1
Associated Gene/TranscriptCG6796-RA
Protein status:RE15573.pep: gold
Preliminary Size:1383
Sequenced Size:1478

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6796 2001-12-14 Blastp of sequenced clone
CG6796 2002-01-01 Sim4 clustering to Release 2
CG6796 2003-01-01 Sim4 clustering to Release 3
CG6796 2008-04-29 Release 5.5 accounting
CG6796 2008-08-15 Release 5.9 accounting
CG6796 2008-12-18 5.12 accounting

Clone Sequence Records

RE15573.complete Sequence

1478 bp (1478 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071089

> RE15573.complete
ATCAAAATAAGAATAAAGATGTTATTCTTGAGACGATTTTACAGCAAATC
CGGACGGATAGCTCAAATATTAAAGACTAATAAGCCAGGCGACTCTTTGG
CCATACAGGGATGGATCAAAAACGTTCGCCGGTTGAAGAACAACACATTT
CTGGACATCAATGATGGTTCCACGAGCAGTAGGTTCCAGGTGGTCGTGCC
CCGGACTCCGGAAAACCAGCACTTGGCTCCGGGAAGCGTCATTGCAGCTG
TCGGTAAAATTCAAGTGGCTCCAAATGGCAGCTTCGAGTTGCATGCGAAT
CAGGTGGAAATGTTGGCTGAAGGACGGCTGCAGGAGGGTTATCCCTTCAG
TCCCAAACAGAAACATCCACCGGAATATGTACGTGAGCATCTACATCTTC
GATCACGCGTAGATTTCGTTGCCGCCCAGATGAGGGTCAGACACAAAGCA
CAAAAAGCTATACACGACTACATGGATGATCAGGATTTCGTGCAGATCAA
CACTCCTCTGCTCACAACCAACGATTGCGAGGGAGCAGGAGAAGTGTTTC
GGGTACAACCGGACTCCCAAGACCTGCTCAAGCAGATGAACCGACCAAAT
ATTCCCATGGAACAAAGCTACTTTGATAGCAAAGTATTCCTCAGCGTCTC
TGGTCAACTGCACCTGGAGGCCATGACATACGGTTTAGGCAAGACATACA
CTCTCTCACCAGCCTTCCGAGCGGAGAACTCCAAGTCTCCGTTGCATTTA
GCAGAGTTCTATATGTTTGAAGCGGAACTTGCCCATTTGGAGGAGATGGA
GAAGTTAGCGCAGTTCATTGAACAGATGCTGAAATCTGTGACAAACCGTT
TGCTGGAAACGAGTGGCGAGGACCTAAGTTTCTGTCAACGGAATTCAAAC
TCTAACTCCGATCTCCCTTGGCTGCAAGTACCGTGGAAGATAATGAGCTA
CGATGAAGCCCTGCAAGTACTGCAGGAAAACAAGGACAGTCTTAAGACTC
CTATTAGCCTGAACGAAGGATTCTCCAAGGACCAAGAACTTTTTTTAGTG
GCCCATTGTGGTGCTCCCGTATTCGTTGTGGATTGGCCAGCTCAGCAGAA
ACCTTTTTACATGAAAGTCTCGCGTTCAAATCCCAATCGAGTTCATGCCC
TAGACCTACTGATGCCAGCTGTTGGAGAATTATGCGGCGGGAGCCTGCGT
GAAAGCGATCCTGCTATATTAAAATCCCATCCGCATCTGCCGAAGGATCT
GGAATGGTACGTTGACTTGCGAAAGTATGGAGGAGTTCCAACTGGAGGAT
TTGGAATGGGCTTTGAGCGTTACTTGCAGCTTGTCACGGGCGTTAAAAAC
ATTCGTGATGTGATACCCTTCCCCAGGTATCCACACAGCTGCAAGATGTG
ATCAGATAAAGATATTAAATGTTTTGTTTTACGTTAAAAGTCTAATAAAC
AAATATTACTCCAAAAAAAAAAAAAAAA

RE15573.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6796-RA 1516 CG6796-RA 52..1514 1..1463 7315 100 Plus
CG6796.a 1524 CG6796.a 376..1522 317..1463 5735 100 Plus
CG6796.a 1524 CG6796.a 52..367 1..316 1580 100 Plus
NiPp1-RA 1495 NiPp1-RA 1376..1495 1463..1344 600 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12889682..12890828 316..1462 5630 99.4 Plus
chr2R 21145070 chr2R 12889410..12889619 107..316 1050 100 Plus
chr2R 21145070 chr2R 12889243..12889351 1..109 545 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17002453..17003600 316..1463 5740 100 Plus
2R 25286936 2R 17002181..17002390 107..316 1050 100 Plus
2R 25286936 2R 17002014..17002122 1..109 545 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17003652..17004799 316..1463 5740 100 Plus
2R 25260384 2R 17003380..17003589 107..316 1050 100 Plus
2R 25260384 2R 17003213..17003321 1..109 545 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:30:08 has no hits.

RE15573.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:30:44 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12889243..12889350 1..108 100 -> Plus
chr2R 12889412..12889619 109..316 100 -> Plus
chr2R 12889683..12890828 317..1462 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:24 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 1..1383 19..1401 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:56 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 1..1383 19..1401 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:14:57 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 1..1383 19..1401 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:12 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 1..1383 19..1401 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:58 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 1..1383 19..1401 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:38:07 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 1..1462 1..1462 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:56 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 1..1462 1..1462 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:57 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 21..1482 1..1462 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:12 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 1..1462 1..1462 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:58 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
CG6796-RA 21..1482 1..1462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:44 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17002014..17002121 1..108 100 -> Plus
2R 17002183..17002390 109..316 100 -> Plus
2R 17002454..17003599 317..1462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:44 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17002014..17002121 1..108 100 -> Plus
2R 17002183..17002390 109..316 100 -> Plus
2R 17002454..17003599 317..1462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:44 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17002014..17002121 1..108 100 -> Plus
2R 17002183..17002390 109..316 100 -> Plus
2R 17002454..17003599 317..1462 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:57 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12889519..12889626 1..108 100 -> Plus
arm_2R 12889688..12889895 109..316 100 -> Plus
arm_2R 12889959..12891104 317..1462 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:10:12 Download gff for RE15573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17003653..17004798 317..1462 100   Plus
2R 17003213..17003320 1..108 100 -> Plus
2R 17003382..17003589 109..316 100 -> Plus

RE15573.hyp Sequence

Translation from 0 to 1400

> RE15573.hyp
IKIRIKMLFLRRFYSKSGRIAQILKTNKPGDSLAIQGWIKNVRRLKNNTF
LDINDGSTSSRFQVVVPRTPENQHLAPGSVIAAVGKIQVAPNGSFELHAN
QVEMLAEGRLQEGYPFSPKQKHPPEYVREHLHLRSRVDFVAAQMRVRHKA
QKAIHDYMDDQDFVQINTPLLTTNDCEGAGEVFRVQPDSQDLLKQMNRPN
IPMEQSYFDSKVFLSVSGQLHLEAMTYGLGKTYTLSPAFRAENSKSPLHL
AEFYMFEAELAHLEEMEKLAQFIEQMLKSVTNRLLETSGEDLSFCQRNSN
SNSDLPWLQVPWKIMSYDEALQVLQENKDSLKTPISLNEGFSKDQELFLV
AHCGAPVFVVDWPAQQKPFYMKVSRSNPNRVHALDLLMPAVGELCGGSLR
ESDPAILKSHPHLPKDLEWYVDLRKYGGVPTGGFGMGFERYLQLVTGVKN
IRDVIPFPRYPHSCKM*

RE15573.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6796-PA 460 CG6796-PA 1..460 7..466 2420 100 Plus
Aats-asn-PB 558 CG10687-PB 140..557 35..465 373 25.9 Plus
Aats-asn-PA 558 CG10687-PA 140..557 35..465 373 25.9 Plus
Aats-asp-PB 531 CG3821-PB 150..526 81..461 235 24.8 Plus
Aats-asp-PC 531 CG3821-PC 150..526 81..461 235 24.8 Plus

RE15573.pep Sequence

Translation from 18 to 1400

> RE15573.pep
MLFLRRFYSKSGRIAQILKTNKPGDSLAIQGWIKNVRRLKNNTFLDINDG
STSSRFQVVVPRTPENQHLAPGSVIAAVGKIQVAPNGSFELHANQVEMLA
EGRLQEGYPFSPKQKHPPEYVREHLHLRSRVDFVAAQMRVRHKAQKAIHD
YMDDQDFVQINTPLLTTNDCEGAGEVFRVQPDSQDLLKQMNRPNIPMEQS
YFDSKVFLSVSGQLHLEAMTYGLGKTYTLSPAFRAENSKSPLHLAEFYMF
EAELAHLEEMEKLAQFIEQMLKSVTNRLLETSGEDLSFCQRNSNSNSDLP
WLQVPWKIMSYDEALQVLQENKDSLKTPISLNEGFSKDQELFLVAHCGAP
VFVVDWPAQQKPFYMKVSRSNPNRVHALDLLMPAVGELCGGSLRESDPAI
LKSHPHLPKDLEWYVDLRKYGGVPTGGFGMGFERYLQLVTGVKNIRDVIP
FPRYPHSCKM*

RE15573.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11428-PA 460 GF11428-PA 1..460 1..460 2166 84.1 Plus
Dana\GF15206-PA 558 GF15206-PA 122..557 12..459 396 26.2 Plus
Dana\GF12925-PA 530 GF12925-PA 150..525 75..455 243 24.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20650-PA 460 GG20650-PA 1..460 1..460 2363 93.5 Plus
Dere\GG21647-PA 558 GG21647-PA 122..557 12..459 374 26.2 Plus
Dere\GG20342-PA 531 GG20342-PA 150..526 75..455 240 24.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22841-PA 460 GH22841-PA 1..460 1..460 1964 74.3 Plus
Dgri\GH13480-PA 558 GH13480-PA 124..557 13..459 379 25.2 Plus
Dgri\GH21379-PA 533 GH21379-PA 226..528 136..455 237 26.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
AsnRS-m-PA 460 CG6796-PA 1..460 1..460 2420 100 Plus
AsnRS-PB 558 CG10687-PB 140..557 29..459 373 25.9 Plus
AsnRS-PA 558 CG10687-PA 140..557 29..459 373 25.9 Plus
AspRS-PB 531 CG3821-PB 150..526 75..455 235 24.8 Plus
AspRS-PC 531 CG3821-PC 150..526 75..455 235 24.8 Plus
AspRS-PA 531 CG3821-PA 150..526 75..455 235 24.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21220-PA 460 GI21220-PA 1..460 1..460 1972 75 Plus
Dmoj\GI17232-PA 558 GI17232-PA 122..557 15..459 409 27 Plus
Dmoj\GI18555-PA 533 GI18555-PA 149..528 72..455 230 24.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10450-PA 460 GL10450-PA 1..460 1..460 2156 83.7 Plus
Dper\GL25284-PA 517 GL25284-PA 94..516 24..459 358 26 Plus
Dper\GL21125-PA 557 GL21125-PA 130..556 20..459 350 25.3 Plus
Dper\GL24844-PA 507 GL24844-PA 185..506 118..459 327 26.6 Plus
Dper\GL25269-PA 397 GL25269-PA 39..396 73..459 309 25.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19868-PA 460 GA19868-PA 1..460 1..460 2164 83.9 Plus
Dpse\GA10495-PA 557 GA10495-PA 130..556 20..459 364 26 Plus
Dpse\GA17710-PA 530 GA17710-PA 150..525 75..455 233 24.3 Plus
Dpse\GA23746-PA 158 GA23746-PA 1..157 309..459 198 31.6 Plus
Dpse\GA23745-PA 225 GA23745-PA 2..197 44..253 157 23 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21746-PA 460 GM21746-PA 1..460 1..460 2439 97.6 Plus
Dsec\GM17026-PA 558 GM17026-PA 122..557 12..459 394 26 Plus
Dsec\GM21429-PA 531 GM21429-PA 150..526 75..455 246 24.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11238-PA 460 GD11238-PA 1..460 1..460 2442 97.8 Plus
Dsim\GD21774-PA 558 GD21774-PA 122..557 12..459 389 26 Plus
Dsim\GD10925-PA 531 GD10925-PA 150..526 75..455 241 24.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20822-PA 460 GJ20822-PA 1..460 1..460 1988 75.7 Plus
Dvir\GJ17991-PA 558 GJ17991-PA 124..557 13..459 384 25.6 Plus
Dvir\GJ20350-PA 537 GJ20350-PA 230..532 136..455 224 25.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19574-PA 459 GK19574-PA 1..459 1..460 1956 74.8 Plus
Dwil\GK17133-PA 548 GK17133-PA 125..547 24..459 390 25.8 Plus
Dwil\GK24233-PA 558 GK24233-PA 135..557 24..459 363 25.3 Plus
Dwil\GK20765-PA 534 GK20765-PA 227..529 136..455 212 24.7 Plus
Dwil\GK20764-PA 533 GK20764-PA 227..528 136..455 190 23.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11636-PA 460 GE11636-PA 1..460 1..460 2347 93.5 Plus
Dyak\GE12667-PA 558 GE12667-PA 122..557 12..459 371 26.2 Plus
Dyak\Aats-asp-PA 531 GE12500-PA 150..526 75..455 239 24.5 Plus