BDGP Sequence Production Resources |
Search the DGRC for RE15573
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 155 |
Well: | 73 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6796-RA |
Protein status: | RE15573.pep: gold |
Preliminary Size: | 1383 |
Sequenced Size: | 1478 |
Gene | Date | Evidence |
---|---|---|
CG6796 | 2001-12-14 | Blastp of sequenced clone |
CG6796 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6796 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6796 | 2008-04-29 | Release 5.5 accounting |
CG6796 | 2008-08-15 | Release 5.9 accounting |
CG6796 | 2008-12-18 | 5.12 accounting |
1478 bp (1478 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071089
> RE15573.complete ATCAAAATAAGAATAAAGATGTTATTCTTGAGACGATTTTACAGCAAATC CGGACGGATAGCTCAAATATTAAAGACTAATAAGCCAGGCGACTCTTTGG CCATACAGGGATGGATCAAAAACGTTCGCCGGTTGAAGAACAACACATTT CTGGACATCAATGATGGTTCCACGAGCAGTAGGTTCCAGGTGGTCGTGCC CCGGACTCCGGAAAACCAGCACTTGGCTCCGGGAAGCGTCATTGCAGCTG TCGGTAAAATTCAAGTGGCTCCAAATGGCAGCTTCGAGTTGCATGCGAAT CAGGTGGAAATGTTGGCTGAAGGACGGCTGCAGGAGGGTTATCCCTTCAG TCCCAAACAGAAACATCCACCGGAATATGTACGTGAGCATCTACATCTTC GATCACGCGTAGATTTCGTTGCCGCCCAGATGAGGGTCAGACACAAAGCA CAAAAAGCTATACACGACTACATGGATGATCAGGATTTCGTGCAGATCAA CACTCCTCTGCTCACAACCAACGATTGCGAGGGAGCAGGAGAAGTGTTTC GGGTACAACCGGACTCCCAAGACCTGCTCAAGCAGATGAACCGACCAAAT ATTCCCATGGAACAAAGCTACTTTGATAGCAAAGTATTCCTCAGCGTCTC TGGTCAACTGCACCTGGAGGCCATGACATACGGTTTAGGCAAGACATACA CTCTCTCACCAGCCTTCCGAGCGGAGAACTCCAAGTCTCCGTTGCATTTA GCAGAGTTCTATATGTTTGAAGCGGAACTTGCCCATTTGGAGGAGATGGA GAAGTTAGCGCAGTTCATTGAACAGATGCTGAAATCTGTGACAAACCGTT TGCTGGAAACGAGTGGCGAGGACCTAAGTTTCTGTCAACGGAATTCAAAC TCTAACTCCGATCTCCCTTGGCTGCAAGTACCGTGGAAGATAATGAGCTA CGATGAAGCCCTGCAAGTACTGCAGGAAAACAAGGACAGTCTTAAGACTC CTATTAGCCTGAACGAAGGATTCTCCAAGGACCAAGAACTTTTTTTAGTG GCCCATTGTGGTGCTCCCGTATTCGTTGTGGATTGGCCAGCTCAGCAGAA ACCTTTTTACATGAAAGTCTCGCGTTCAAATCCCAATCGAGTTCATGCCC TAGACCTACTGATGCCAGCTGTTGGAGAATTATGCGGCGGGAGCCTGCGT GAAAGCGATCCTGCTATATTAAAATCCCATCCGCATCTGCCGAAGGATCT GGAATGGTACGTTGACTTGCGAAAGTATGGAGGAGTTCCAACTGGAGGAT TTGGAATGGGCTTTGAGCGTTACTTGCAGCTTGTCACGGGCGTTAAAAAC ATTCGTGATGTGATACCCTTCCCCAGGTATCCACACAGCTGCAAGATGTG ATCAGATAAAGATATTAAATGTTTTGTTTTACGTTAAAAGTCTAATAAAC AAATATTACTCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6796-RA | 1516 | CG6796-RA | 52..1514 | 1..1463 | 7315 | 100 | Plus |
CG6796.a | 1524 | CG6796.a | 376..1522 | 317..1463 | 5735 | 100 | Plus |
CG6796.a | 1524 | CG6796.a | 52..367 | 1..316 | 1580 | 100 | Plus |
NiPp1-RA | 1495 | NiPp1-RA | 1376..1495 | 1463..1344 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 12889682..12890828 | 316..1462 | 5630 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 12889410..12889619 | 107..316 | 1050 | 100 | Plus |
chr2R | 21145070 | chr2R | 12889243..12889351 | 1..109 | 545 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 17002453..17003600 | 316..1463 | 5740 | 100 | Plus |
2R | 25286936 | 2R | 17002181..17002390 | 107..316 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 17002014..17002122 | 1..109 | 545 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 17003652..17004799 | 316..1463 | 5740 | 100 | Plus |
2R | 25260384 | 2R | 17003380..17003589 | 107..316 | 1050 | 100 | Plus |
2R | 25260384 | 2R | 17003213..17003321 | 1..109 | 545 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 12889243..12889350 | 1..108 | 100 | -> | Plus |
chr2R | 12889412..12889619 | 109..316 | 100 | -> | Plus |
chr2R | 12889683..12890828 | 317..1462 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6796-RA | 1..1383 | 19..1401 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6796-RA | 1..1383 | 19..1401 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6796-RA | 1..1383 | 19..1401 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6796-RA | 1..1383 | 19..1401 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6796-RA | 1..1383 | 19..1401 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6796-RA | 1..1462 | 1..1462 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6796-RA | 1..1462 | 1..1462 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6796-RA | 21..1482 | 1..1462 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6796-RA | 1..1462 | 1..1462 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6796-RA | 21..1482 | 1..1462 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17002014..17002121 | 1..108 | 100 | -> | Plus |
2R | 17002183..17002390 | 109..316 | 100 | -> | Plus |
2R | 17002454..17003599 | 317..1462 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17002014..17002121 | 1..108 | 100 | -> | Plus |
2R | 17002183..17002390 | 109..316 | 100 | -> | Plus |
2R | 17002454..17003599 | 317..1462 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17002014..17002121 | 1..108 | 100 | -> | Plus |
2R | 17002183..17002390 | 109..316 | 100 | -> | Plus |
2R | 17002454..17003599 | 317..1462 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 12889519..12889626 | 1..108 | 100 | -> | Plus |
arm_2R | 12889688..12889895 | 109..316 | 100 | -> | Plus |
arm_2R | 12889959..12891104 | 317..1462 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17003653..17004798 | 317..1462 | 100 | Plus | |
2R | 17003213..17003320 | 1..108 | 100 | -> | Plus |
2R | 17003382..17003589 | 109..316 | 100 | -> | Plus |
Translation from 0 to 1400
> RE15573.hyp IKIRIKMLFLRRFYSKSGRIAQILKTNKPGDSLAIQGWIKNVRRLKNNTF LDINDGSTSSRFQVVVPRTPENQHLAPGSVIAAVGKIQVAPNGSFELHAN QVEMLAEGRLQEGYPFSPKQKHPPEYVREHLHLRSRVDFVAAQMRVRHKA QKAIHDYMDDQDFVQINTPLLTTNDCEGAGEVFRVQPDSQDLLKQMNRPN IPMEQSYFDSKVFLSVSGQLHLEAMTYGLGKTYTLSPAFRAENSKSPLHL AEFYMFEAELAHLEEMEKLAQFIEQMLKSVTNRLLETSGEDLSFCQRNSN SNSDLPWLQVPWKIMSYDEALQVLQENKDSLKTPISLNEGFSKDQELFLV AHCGAPVFVVDWPAQQKPFYMKVSRSNPNRVHALDLLMPAVGELCGGSLR ESDPAILKSHPHLPKDLEWYVDLRKYGGVPTGGFGMGFERYLQLVTGVKN IRDVIPFPRYPHSCKM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6796-PA | 460 | CG6796-PA | 1..460 | 7..466 | 2420 | 100 | Plus |
Aats-asn-PB | 558 | CG10687-PB | 140..557 | 35..465 | 373 | 25.9 | Plus |
Aats-asn-PA | 558 | CG10687-PA | 140..557 | 35..465 | 373 | 25.9 | Plus |
Aats-asp-PB | 531 | CG3821-PB | 150..526 | 81..461 | 235 | 24.8 | Plus |
Aats-asp-PC | 531 | CG3821-PC | 150..526 | 81..461 | 235 | 24.8 | Plus |
Translation from 18 to 1400
> RE15573.pep MLFLRRFYSKSGRIAQILKTNKPGDSLAIQGWIKNVRRLKNNTFLDINDG STSSRFQVVVPRTPENQHLAPGSVIAAVGKIQVAPNGSFELHANQVEMLA EGRLQEGYPFSPKQKHPPEYVREHLHLRSRVDFVAAQMRVRHKAQKAIHD YMDDQDFVQINTPLLTTNDCEGAGEVFRVQPDSQDLLKQMNRPNIPMEQS YFDSKVFLSVSGQLHLEAMTYGLGKTYTLSPAFRAENSKSPLHLAEFYMF EAELAHLEEMEKLAQFIEQMLKSVTNRLLETSGEDLSFCQRNSNSNSDLP WLQVPWKIMSYDEALQVLQENKDSLKTPISLNEGFSKDQELFLVAHCGAP VFVVDWPAQQKPFYMKVSRSNPNRVHALDLLMPAVGELCGGSLRESDPAI LKSHPHLPKDLEWYVDLRKYGGVPTGGFGMGFERYLQLVTGVKNIRDVIP FPRYPHSCKM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11428-PA | 460 | GF11428-PA | 1..460 | 1..460 | 2166 | 84.1 | Plus |
Dana\GF15206-PA | 558 | GF15206-PA | 122..557 | 12..459 | 396 | 26.2 | Plus |
Dana\GF12925-PA | 530 | GF12925-PA | 150..525 | 75..455 | 243 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20650-PA | 460 | GG20650-PA | 1..460 | 1..460 | 2363 | 93.5 | Plus |
Dere\GG21647-PA | 558 | GG21647-PA | 122..557 | 12..459 | 374 | 26.2 | Plus |
Dere\GG20342-PA | 531 | GG20342-PA | 150..526 | 75..455 | 240 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22841-PA | 460 | GH22841-PA | 1..460 | 1..460 | 1964 | 74.3 | Plus |
Dgri\GH13480-PA | 558 | GH13480-PA | 124..557 | 13..459 | 379 | 25.2 | Plus |
Dgri\GH21379-PA | 533 | GH21379-PA | 226..528 | 136..455 | 237 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
AsnRS-m-PA | 460 | CG6796-PA | 1..460 | 1..460 | 2420 | 100 | Plus |
AsnRS-PB | 558 | CG10687-PB | 140..557 | 29..459 | 373 | 25.9 | Plus |
AsnRS-PA | 558 | CG10687-PA | 140..557 | 29..459 | 373 | 25.9 | Plus |
AspRS-PB | 531 | CG3821-PB | 150..526 | 75..455 | 235 | 24.8 | Plus |
AspRS-PC | 531 | CG3821-PC | 150..526 | 75..455 | 235 | 24.8 | Plus |
AspRS-PA | 531 | CG3821-PA | 150..526 | 75..455 | 235 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21220-PA | 460 | GI21220-PA | 1..460 | 1..460 | 1972 | 75 | Plus |
Dmoj\GI17232-PA | 558 | GI17232-PA | 122..557 | 15..459 | 409 | 27 | Plus |
Dmoj\GI18555-PA | 533 | GI18555-PA | 149..528 | 72..455 | 230 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10450-PA | 460 | GL10450-PA | 1..460 | 1..460 | 2156 | 83.7 | Plus |
Dper\GL25284-PA | 517 | GL25284-PA | 94..516 | 24..459 | 358 | 26 | Plus |
Dper\GL21125-PA | 557 | GL21125-PA | 130..556 | 20..459 | 350 | 25.3 | Plus |
Dper\GL24844-PA | 507 | GL24844-PA | 185..506 | 118..459 | 327 | 26.6 | Plus |
Dper\GL25269-PA | 397 | GL25269-PA | 39..396 | 73..459 | 309 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19868-PA | 460 | GA19868-PA | 1..460 | 1..460 | 2164 | 83.9 | Plus |
Dpse\GA10495-PA | 557 | GA10495-PA | 130..556 | 20..459 | 364 | 26 | Plus |
Dpse\GA17710-PA | 530 | GA17710-PA | 150..525 | 75..455 | 233 | 24.3 | Plus |
Dpse\GA23746-PA | 158 | GA23746-PA | 1..157 | 309..459 | 198 | 31.6 | Plus |
Dpse\GA23745-PA | 225 | GA23745-PA | 2..197 | 44..253 | 157 | 23 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21746-PA | 460 | GM21746-PA | 1..460 | 1..460 | 2439 | 97.6 | Plus |
Dsec\GM17026-PA | 558 | GM17026-PA | 122..557 | 12..459 | 394 | 26 | Plus |
Dsec\GM21429-PA | 531 | GM21429-PA | 150..526 | 75..455 | 246 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11238-PA | 460 | GD11238-PA | 1..460 | 1..460 | 2442 | 97.8 | Plus |
Dsim\GD21774-PA | 558 | GD21774-PA | 122..557 | 12..459 | 389 | 26 | Plus |
Dsim\GD10925-PA | 531 | GD10925-PA | 150..526 | 75..455 | 241 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20822-PA | 460 | GJ20822-PA | 1..460 | 1..460 | 1988 | 75.7 | Plus |
Dvir\GJ17991-PA | 558 | GJ17991-PA | 124..557 | 13..459 | 384 | 25.6 | Plus |
Dvir\GJ20350-PA | 537 | GJ20350-PA | 230..532 | 136..455 | 224 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19574-PA | 459 | GK19574-PA | 1..459 | 1..460 | 1956 | 74.8 | Plus |
Dwil\GK17133-PA | 548 | GK17133-PA | 125..547 | 24..459 | 390 | 25.8 | Plus |
Dwil\GK24233-PA | 558 | GK24233-PA | 135..557 | 24..459 | 363 | 25.3 | Plus |
Dwil\GK20765-PA | 534 | GK20765-PA | 227..529 | 136..455 | 212 | 24.7 | Plus |
Dwil\GK20764-PA | 533 | GK20764-PA | 227..528 | 136..455 | 190 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11636-PA | 460 | GE11636-PA | 1..460 | 1..460 | 2347 | 93.5 | Plus |
Dyak\GE12667-PA | 558 | GE12667-PA | 122..557 | 12..459 | 371 | 26.2 | Plus |
Dyak\Aats-asp-PA | 531 | GE12500-PA | 150..526 | 75..455 | 239 | 24.5 | Plus |