Clone RE15808 Report

Search the DGRC for RE15808

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:158
Well:8
Vector:pFlc-1
Associated Gene/Transcriptnumb-RA
Protein status:RE15808.pep: gold
Sequenced Size:3290

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3779 2006-04-19 Manual selection by Joe Carlson for RA
numb 2008-04-29 In process prior to 5.5

Clone Sequence Records

RE15808.complete Sequence

3290 bp assembled on 2009-01-05

GenBank Submission: BT056305.1

> RE15808.complete
ATTCGCTTTCGGCCCACTGTCGTCGTCGGTTGTCCAAATGTCCGCGTAGG
GATAGTGTAACCTTTTTCCAATTTCCGGGGGGGTCATAGTAAAAAAGTTA
ACACCTAAGTAGTCCAGGCCTTTTGGGCCAAGCCGATCCCAGCCATCCAT
TTACCGGGCACCGGGCTCTTAACACGGGGATCGTTTTAATCGGTGTCGCG
TTGTCGTTATTTCGGTTTTTCGCGATTTTCCCCACATTCCGTGTGCTGTG
TGCTGTGCGAGGTGTTCTTGGAATTAATAAATAGTTAAAACCGAAACGTT
GGCAAAAATCCACTGAATGAGCAAGAAAGTTATATAAGGCCCGAACCGGA
TTTATTTATTAATTATACATACGAATGTGATCAAAACAAAAACAGACTGA
CAACAAAACTCGGCTTTTTGGAATATACCAAAAAAAGCAACTCAAATACA
AACCGATCCCGATATATATATGATCGCGCCCATCAATTTAATTTAATCAA
AAGCAGTTACTCAAATTCAATGAACAAATAAATTTGCGCAGCCCAACAAG
CCAATAAACGGATCAATAAACCGAAATACAATACACGATTTCCGCTAACA
TCTGGCAACGCTGTCCGTTGGCAGCTTGTAACGGTTATTCACGACAATTT
ACTCACGCCCCGAACGAGTGCAGCGAAACCAGCGAGTGCGAGCGAGAGGG
CTAGCGAACAGGCATGGGAAACTCCTCGTCACACACGCACGAACCACTCG
AGCGCGGCTTCACACGCGGAAAATTCGGTGATGTTAAAAATGGGAAATCC
GCTTCCTTCCGGTTTAGCAAGAAATCGCCGAAGAAAATGGATCGTCTGCG
TCGCTCCTTTCGCGATTCCTTTAGGCGTCGCAAGGATCGCGTTCCCGAAT
CCTCGAAGCCGCATCAATGGCAGGCGGACGAGGAGGCCGTGCGATCGGCC
ACCTGCTCCTTTTCCGTCAAGTATCTGGGATGTGTCGAGGTCTTTGAATC
GCGCGGCATGCAGGTCTGCGAGGAGGCACTCAAGGTCTTGAGGCAATCCC
GTCGTCGTCCTGTCCGCGGATTACTTCATGTCAGCGGAGACGGCCTGCGA
GTGGTGGACGACGAGACCAAGGGCCTGATAGTGGACCAGACCATCGAGAA
GGTCAGCTTCTGTGCACCGGATCGCAATCACGAACGCGGCTTCAGCTACA
TATGCCGGGATGGAACCACTCGTCGCTGGATGTGTCACGGCTTCCTGGCG
TGCAAGGACTCCGGCGAGCGATTGTCCCATGCCGTTGGCTGTGCTTTTGC
CGTTTGTCTGGAGCGAAAGCAGCGACGCGACAAGGAGTGCGGCGTGACAA
TGACCTTCGACACGAAGAACTCGACCTTCACGCGGACCGGATCCTTCCGT
CAGCAGACGTTGACGGAGCGTCTGGCAATGGCCACAGTGGGCACAAATGA
GCGGAGCGTAGATGGGCCGGGATCAGCAATGCCGGGTCCTCCGGCGGCCA
CCGTCAAGCCTTTCAATCCCTTCGCCATCGAACGGCCCCATGCCACGCCC
AACATGCTGGAGCGTCAGAGTTCGTTCCGTTTGAGCACGATTGGCAGTCA
GTCGCCGTTCAAGCGCCAGATGTCACTGCGCATCAACGATCTTCCGTCCA
ATGCCGATCGTCAGAGGGCCTTCCTGACCGCCGCCGCTGGCAATCCAATG
CAGACGCCACTGCGAAGTGTTTCTCCCATTGCCGAGGTCTCGCCGGCCAA
GTCTGCTGGAGCGGATCCGTTGTCAGCTGCCGCTGTAGCCGCCGATTCTG
TGAGCCAACTGTGTCAGGAGCTCAGCCAGGGTCTCTCGCTCTTGACCCAG
ACAGACGCCCTATTAGCCGCCGGCGAGGATCTAAACTTCAACAACAATCG
CAGCATTAATCAGAACATCATTGCCGCCGAGAAGCAGGTGCAACATGTAC
ACTCATATGCCCCGCCGACGGCACAAGTGACGCCTCGAGTGGCCAGCACC
ACGCCCACATATCAGACGCTCCATTCGCAGTCGCCCTCGCGATCGGAGCA
GAGCATCGAAACCTCGACGGAACTGCCCAATGCCGAGCAATGGCTGGGTC
ATGTGGTGCGCAGTACGTCTCCGGCAGCACCGAAGCGGCCCACTTATTTG
GCCAACGTTGGCCGAGCTCAGACACTGGCCAGTGGCACTGGCGCTGCAGT
TGGAGGCGGTGGCCCAGACGATCCATTTGACGCCGAGTGGGTGGCCAATG
TGGCAGCGGCCAAGCAATTGTCGCCAGACTTGCCAATCCCGAGCACTGCG
CGCTCGCCTCTGGCCAGGCACAGCACCAATCCGTTCATCTCACCGCCCAA
GGCGCCGGCGCAGTCATTCCAGGTGCAGCTCTAGGCAGCGATTGCGGGGT
CACCAGGGGGACAAAGTGTGGTTCGCTTGAAAAAAACGTAACTTAGTTTA
AAGTTCAGGGGCAGGATCGGGCCAAACAGAGAATCGAACAAAGATGGTTA
GATGGATGGCTGGATCGGATGGAGGTTATCAGAGATACTTAACGCAAACA
TAACTAATGTTGAATATGCATATATAGAAAACATAAACTACAGTTACTCA
CACGCAAAACGCATCAAGTACAGTAAATAAATCCATCAATGGCGCTTAGC
ACTAGGCCAAAACTTAAATTGCTTCGAGTAAAATAAATCATCAGTTCGTA
AGAGATCTTATACCGAATTTCAGTCTTATAAGCGGTTTTGAGTATGCAAC
TAGGAATTAAAGTTCTACGACATGTAATTTTTAAAAGACTTGAGTCATAC
TTCGATCATTCTTCCCATACTAAAAGACCGTTTCCATTGACTAGACTGAT
ACTGGGGAAGATCCCTTAGTCACTCAACAATTGACCAAGCTACCAAGTTA
CCCACGAAAGTCCACCATAAAGTAAACAACAAAACAAAAACAAATGGCAC
CCTCTAAGCTTAAATGCAAACTCTGTATTATACTTTGGTAATGCCCTTCC
ACTACTTGTTGATTGATCCCACTAAGAATAATGATTAGATACATAAATAT
GTATGTTGATATATAGGAAGCTCTATGTCATAGAGCCGATTATTATTTTA
TCAGTGTCAGTTTTGCGGTACACCGTTTTTATATCAAATCTTTTATTATT
TAACTTAATTTTTAAATCTGTACAAAATGTATTATCTTAAATTATAAATA
TAATTTAAAAATAAACAAAACGGAAACGTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAA

RE15808.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
numb-RA 3622 numb-RA 166..3400 1..3234 16135 99.9 Plus
numb.m 4058 numb.m 166..3400 1..3234 16135 99.9 Plus
numb.i 3902 numb.i 166..3400 1..3234 16135 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9459816..9462007 1043..3234 10595 99.1 Plus
chr2L 23010047 chr2L 9448838..9449308 1..472 2310 99.8 Plus
chr2L 23010047 chr2L 9458929..9459251 472..794 1600 99.7 Plus
chr2L 23010047 chr2L 9459395..9459644 794..1043 1235 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9460937..9463129 1043..3234 10915 100 Plus
2L 23513712 2L 9449910..9450381 1..472 2360 100 Plus
2L 23513712 2L 9460046..9460368 472..794 1615 100 Plus
2L 23513712 2L 9460504..9460753 794..1043 1250 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9460937..9463129 1043..3234 10925 99.9 Plus
2L 23513712 2L 9449910..9450381 1..472 2360 100 Plus
2L 23513712 2L 9460046..9460368 472..794 1615 100 Plus
2L 23513712 2L 9460504..9460753 794..1043 1250 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:49:57 has no hits.

RE15808.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:51:11 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9448838..9449308 1..472 99 -> Plus
chr2L 9458930..9459251 473..794 99 -> Plus
chr2L 9459396..9459644 795..1043 99 -> Plus
chr2L 9459817..9461886 1044..3113 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:33:20 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 1..1671 714..2384 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:22:08 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 1..1671 714..2384 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:47:58 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 1..1671 714..2384 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:07 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 1..1671 714..2384 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:19 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 81..3310 1..3229 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:22:08 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 81..3310 1..3229 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:58 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 81..3309 1..3228 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:07 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 81..3309 1..3228 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:11 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9460505..9460753 795..1043 100 -> Plus
2L 9449910..9450381 1..472 100 -> Plus
2L 9460047..9460368 473..794 100 -> Plus
2L 9460938..9463124 1044..3229 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:11 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9460505..9460753 795..1043 100 -> Plus
2L 9449910..9450381 1..472 100 -> Plus
2L 9460047..9460368 473..794 100 -> Plus
2L 9460938..9463124 1044..3229 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:11 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9460505..9460753 795..1043 100 -> Plus
2L 9449910..9450381 1..472 100 -> Plus
2L 9460047..9460368 473..794 100 -> Plus
2L 9460938..9463124 1044..3229 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:58 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9449910..9450381 1..472 100 -> Plus
arm_2L 9460047..9460368 473..794 100 -> Plus
arm_2L 9460505..9460753 795..1043 100 -> Plus
arm_2L 9460938..9463124 1044..3229 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:10:06 Download gff for RE15808.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9449910..9450381 1..472 100 -> Plus
2L 9460047..9460368 473..794 100 -> Plus
2L 9460505..9460753 795..1043 100 -> Plus
2L 9460938..9463124 1044..3229 99   Plus

RE15808.pep Sequence

Translation from 713 to 2383

> RE15808.pep
MGNSSSHTHEPLERGFTRGKFGDVKNGKSASFRFSKKSPKKMDRLRRSFR
DSFRRRKDRVPESSKPHQWQADEEAVRSATCSFSVKYLGCVEVFESRGMQ
VCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVSFC
APDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLE
RKQRRDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMATVGTNERSVD
GPGSAMPGPPAATVKPFNPFAIERPHATPNMLERQSSFRLSTIGSQSPFK
RQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRSVSPIAEVSPAKSAGA
DPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLNFNNNRSINQ
NIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQSIET
STELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASGTGAAVGGGG
PDDPFDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPFISPPKAPAQ
SFQVQL*

RE15808.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22745-PA 556 GF22745-PA 1..556 1..556 2576 92.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25352-PA 560 GG25352-PA 1..560 1..556 2902 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13024-PA 555 GH13024-PA 1..555 1..556 2188 81.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
numb-PD 556 CG3779-PD 1..556 1..556 2880 100 Plus
numb-PA 556 CG3779-PA 1..556 1..556 2880 100 Plus
numb-PB 515 CG3779-PB 1..515 42..556 2663 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17641-PA 575 GI17641-PA 1..575 1..556 2301 81.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26154-PA 560 GL26154-PA 1..560 1..556 2377 87.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17683-PA 559 GA17683-PA 1..559 1..556 2367 87.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17464-PA 556 GM17464-PA 1..556 1..556 2948 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23607-PA 556 GD23607-PA 1..556 1..556 2952 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18207-PA 552 GJ18207-PA 1..552 1..556 2285 82.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24208-PA 561 GK24208-PA 1..561 1..556 2375 88.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18844-PA 556 GE18844-PA 1..556 1..556 2924 98.6 Plus
Dyak\GE14752-PA 132 GE14752-PA 12..132 436..556 539 96.7 Plus
Dyak\GE25448-PA 132 GE25448-PA 12..132 436..556 538 96.7 Plus

RE15808.hyp Sequence

Translation from 713 to 2383

> RE15808.hyp
MGNSSSHTHEPLERGFTRGKFGDVKNGKSASFRFSKKSPKKMDRLRRSFR
DSFRRRKDRVPESSKPHQWQADEEAVRSATCSFSVKYLGCVEVFESRGMQ
VCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVSFC
APDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLE
RKQRRDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMATVGTNERSVD
GPGSAMPGPPAATVKPFNPFAIERPHATPNMLERQSSFRLSTIGSQSPFK
RQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRSVSPIAEVSPAKSAGA
DPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLNFNNNRSINQ
NIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQSIET
STELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASGTGAAVGGGG
PDDPFDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPFISPPKAPAQ
SFQVQL*

RE15808.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
numb-PD 556 CG3779-PD 1..556 1..556 2880 100 Plus
numb-PA 556 CG3779-PA 1..556 1..556 2880 100 Plus
numb-PB 515 CG3779-PB 1..515 42..556 2663 100 Plus