BDGP Sequence Production Resources |
Search the DGRC for RE15808
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 158 |
Well: | 8 |
Vector: | pFlc-1 |
Associated Gene/Transcript | numb-RA |
Protein status: | RE15808.pep: gold |
Sequenced Size: | 3290 |
Gene | Date | Evidence |
---|---|---|
CG3779 | 2006-04-19 | Manual selection by Joe Carlson for RA |
numb | 2008-04-29 | In process prior to 5.5 |
3290 bp assembled on 2009-01-05
GenBank Submission: BT056305.1
> RE15808.complete ATTCGCTTTCGGCCCACTGTCGTCGTCGGTTGTCCAAATGTCCGCGTAGG GATAGTGTAACCTTTTTCCAATTTCCGGGGGGGTCATAGTAAAAAAGTTA ACACCTAAGTAGTCCAGGCCTTTTGGGCCAAGCCGATCCCAGCCATCCAT TTACCGGGCACCGGGCTCTTAACACGGGGATCGTTTTAATCGGTGTCGCG TTGTCGTTATTTCGGTTTTTCGCGATTTTCCCCACATTCCGTGTGCTGTG TGCTGTGCGAGGTGTTCTTGGAATTAATAAATAGTTAAAACCGAAACGTT GGCAAAAATCCACTGAATGAGCAAGAAAGTTATATAAGGCCCGAACCGGA TTTATTTATTAATTATACATACGAATGTGATCAAAACAAAAACAGACTGA CAACAAAACTCGGCTTTTTGGAATATACCAAAAAAAGCAACTCAAATACA AACCGATCCCGATATATATATGATCGCGCCCATCAATTTAATTTAATCAA AAGCAGTTACTCAAATTCAATGAACAAATAAATTTGCGCAGCCCAACAAG CCAATAAACGGATCAATAAACCGAAATACAATACACGATTTCCGCTAACA TCTGGCAACGCTGTCCGTTGGCAGCTTGTAACGGTTATTCACGACAATTT ACTCACGCCCCGAACGAGTGCAGCGAAACCAGCGAGTGCGAGCGAGAGGG CTAGCGAACAGGCATGGGAAACTCCTCGTCACACACGCACGAACCACTCG AGCGCGGCTTCACACGCGGAAAATTCGGTGATGTTAAAAATGGGAAATCC GCTTCCTTCCGGTTTAGCAAGAAATCGCCGAAGAAAATGGATCGTCTGCG TCGCTCCTTTCGCGATTCCTTTAGGCGTCGCAAGGATCGCGTTCCCGAAT CCTCGAAGCCGCATCAATGGCAGGCGGACGAGGAGGCCGTGCGATCGGCC ACCTGCTCCTTTTCCGTCAAGTATCTGGGATGTGTCGAGGTCTTTGAATC GCGCGGCATGCAGGTCTGCGAGGAGGCACTCAAGGTCTTGAGGCAATCCC GTCGTCGTCCTGTCCGCGGATTACTTCATGTCAGCGGAGACGGCCTGCGA GTGGTGGACGACGAGACCAAGGGCCTGATAGTGGACCAGACCATCGAGAA GGTCAGCTTCTGTGCACCGGATCGCAATCACGAACGCGGCTTCAGCTACA TATGCCGGGATGGAACCACTCGTCGCTGGATGTGTCACGGCTTCCTGGCG TGCAAGGACTCCGGCGAGCGATTGTCCCATGCCGTTGGCTGTGCTTTTGC CGTTTGTCTGGAGCGAAAGCAGCGACGCGACAAGGAGTGCGGCGTGACAA TGACCTTCGACACGAAGAACTCGACCTTCACGCGGACCGGATCCTTCCGT CAGCAGACGTTGACGGAGCGTCTGGCAATGGCCACAGTGGGCACAAATGA GCGGAGCGTAGATGGGCCGGGATCAGCAATGCCGGGTCCTCCGGCGGCCA CCGTCAAGCCTTTCAATCCCTTCGCCATCGAACGGCCCCATGCCACGCCC AACATGCTGGAGCGTCAGAGTTCGTTCCGTTTGAGCACGATTGGCAGTCA GTCGCCGTTCAAGCGCCAGATGTCACTGCGCATCAACGATCTTCCGTCCA ATGCCGATCGTCAGAGGGCCTTCCTGACCGCCGCCGCTGGCAATCCAATG CAGACGCCACTGCGAAGTGTTTCTCCCATTGCCGAGGTCTCGCCGGCCAA GTCTGCTGGAGCGGATCCGTTGTCAGCTGCCGCTGTAGCCGCCGATTCTG TGAGCCAACTGTGTCAGGAGCTCAGCCAGGGTCTCTCGCTCTTGACCCAG ACAGACGCCCTATTAGCCGCCGGCGAGGATCTAAACTTCAACAACAATCG CAGCATTAATCAGAACATCATTGCCGCCGAGAAGCAGGTGCAACATGTAC ACTCATATGCCCCGCCGACGGCACAAGTGACGCCTCGAGTGGCCAGCACC ACGCCCACATATCAGACGCTCCATTCGCAGTCGCCCTCGCGATCGGAGCA GAGCATCGAAACCTCGACGGAACTGCCCAATGCCGAGCAATGGCTGGGTC ATGTGGTGCGCAGTACGTCTCCGGCAGCACCGAAGCGGCCCACTTATTTG GCCAACGTTGGCCGAGCTCAGACACTGGCCAGTGGCACTGGCGCTGCAGT TGGAGGCGGTGGCCCAGACGATCCATTTGACGCCGAGTGGGTGGCCAATG TGGCAGCGGCCAAGCAATTGTCGCCAGACTTGCCAATCCCGAGCACTGCG CGCTCGCCTCTGGCCAGGCACAGCACCAATCCGTTCATCTCACCGCCCAA GGCGCCGGCGCAGTCATTCCAGGTGCAGCTCTAGGCAGCGATTGCGGGGT CACCAGGGGGACAAAGTGTGGTTCGCTTGAAAAAAACGTAACTTAGTTTA AAGTTCAGGGGCAGGATCGGGCCAAACAGAGAATCGAACAAAGATGGTTA GATGGATGGCTGGATCGGATGGAGGTTATCAGAGATACTTAACGCAAACA TAACTAATGTTGAATATGCATATATAGAAAACATAAACTACAGTTACTCA CACGCAAAACGCATCAAGTACAGTAAATAAATCCATCAATGGCGCTTAGC ACTAGGCCAAAACTTAAATTGCTTCGAGTAAAATAAATCATCAGTTCGTA AGAGATCTTATACCGAATTTCAGTCTTATAAGCGGTTTTGAGTATGCAAC TAGGAATTAAAGTTCTACGACATGTAATTTTTAAAAGACTTGAGTCATAC TTCGATCATTCTTCCCATACTAAAAGACCGTTTCCATTGACTAGACTGAT ACTGGGGAAGATCCCTTAGTCACTCAACAATTGACCAAGCTACCAAGTTA CCCACGAAAGTCCACCATAAAGTAAACAACAAAACAAAAACAAATGGCAC CCTCTAAGCTTAAATGCAAACTCTGTATTATACTTTGGTAATGCCCTTCC ACTACTTGTTGATTGATCCCACTAAGAATAATGATTAGATACATAAATAT GTATGTTGATATATAGGAAGCTCTATGTCATAGAGCCGATTATTATTTTA TCAGTGTCAGTTTTGCGGTACACCGTTTTTATATCAAATCTTTTATTATT TAACTTAATTTTTAAATCTGTACAAAATGTATTATCTTAAATTATAAATA TAATTTAAAAATAAACAAAACGGAAACGTAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9459816..9462007 | 1043..3234 | 10595 | 99.1 | Plus |
chr2L | 23010047 | chr2L | 9448838..9449308 | 1..472 | 2310 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 9458929..9459251 | 472..794 | 1600 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 9459395..9459644 | 794..1043 | 1235 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9460937..9463129 | 1043..3234 | 10915 | 100 | Plus |
2L | 23513712 | 2L | 9449910..9450381 | 1..472 | 2360 | 100 | Plus |
2L | 23513712 | 2L | 9460046..9460368 | 472..794 | 1615 | 100 | Plus |
2L | 23513712 | 2L | 9460504..9460753 | 794..1043 | 1250 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9460937..9463129 | 1043..3234 | 10925 | 99.9 | Plus |
2L | 23513712 | 2L | 9449910..9450381 | 1..472 | 2360 | 100 | Plus |
2L | 23513712 | 2L | 9460046..9460368 | 472..794 | 1615 | 100 | Plus |
2L | 23513712 | 2L | 9460504..9460753 | 794..1043 | 1250 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9448838..9449308 | 1..472 | 99 | -> | Plus |
chr2L | 9458930..9459251 | 473..794 | 99 | -> | Plus |
chr2L | 9459396..9459644 | 795..1043 | 99 | -> | Plus |
chr2L | 9459817..9461886 | 1044..3113 | 99 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 1..1671 | 714..2384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 1..1671 | 714..2384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 1..1671 | 714..2384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 1..1671 | 714..2384 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 81..3310 | 1..3229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 81..3310 | 1..3229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 81..3309 | 1..3228 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 81..3309 | 1..3228 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9460505..9460753 | 795..1043 | 100 | -> | Plus |
2L | 9449910..9450381 | 1..472 | 100 | -> | Plus |
2L | 9460047..9460368 | 473..794 | 100 | -> | Plus |
2L | 9460938..9463124 | 1044..3229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9460505..9460753 | 795..1043 | 100 | -> | Plus |
2L | 9449910..9450381 | 1..472 | 100 | -> | Plus |
2L | 9460047..9460368 | 473..794 | 100 | -> | Plus |
2L | 9460938..9463124 | 1044..3229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9460505..9460753 | 795..1043 | 100 | -> | Plus |
2L | 9449910..9450381 | 1..472 | 100 | -> | Plus |
2L | 9460047..9460368 | 473..794 | 100 | -> | Plus |
2L | 9460938..9463124 | 1044..3229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9449910..9450381 | 1..472 | 100 | -> | Plus |
arm_2L | 9460047..9460368 | 473..794 | 100 | -> | Plus |
arm_2L | 9460505..9460753 | 795..1043 | 100 | -> | Plus |
arm_2L | 9460938..9463124 | 1044..3229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9449910..9450381 | 1..472 | 100 | -> | Plus |
2L | 9460047..9460368 | 473..794 | 100 | -> | Plus |
2L | 9460505..9460753 | 795..1043 | 100 | -> | Plus |
2L | 9460938..9463124 | 1044..3229 | 99 | Plus |
Translation from 713 to 2383
> RE15808.pep MGNSSSHTHEPLERGFTRGKFGDVKNGKSASFRFSKKSPKKMDRLRRSFR DSFRRRKDRVPESSKPHQWQADEEAVRSATCSFSVKYLGCVEVFESRGMQ VCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVSFC APDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLE RKQRRDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMATVGTNERSVD GPGSAMPGPPAATVKPFNPFAIERPHATPNMLERQSSFRLSTIGSQSPFK RQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRSVSPIAEVSPAKSAGA DPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLNFNNNRSINQ NIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQSIET STELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASGTGAAVGGGG PDDPFDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPFISPPKAPAQ SFQVQL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22745-PA | 556 | GF22745-PA | 1..556 | 1..556 | 2576 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25352-PA | 560 | GG25352-PA | 1..560 | 1..556 | 2902 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13024-PA | 555 | GH13024-PA | 1..555 | 1..556 | 2188 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
numb-PD | 556 | CG3779-PD | 1..556 | 1..556 | 2880 | 100 | Plus |
numb-PA | 556 | CG3779-PA | 1..556 | 1..556 | 2880 | 100 | Plus |
numb-PB | 515 | CG3779-PB | 1..515 | 42..556 | 2663 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17641-PA | 575 | GI17641-PA | 1..575 | 1..556 | 2301 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26154-PA | 560 | GL26154-PA | 1..560 | 1..556 | 2377 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17683-PA | 559 | GA17683-PA | 1..559 | 1..556 | 2367 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17464-PA | 556 | GM17464-PA | 1..556 | 1..556 | 2948 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23607-PA | 556 | GD23607-PA | 1..556 | 1..556 | 2952 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18207-PA | 552 | GJ18207-PA | 1..552 | 1..556 | 2285 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24208-PA | 561 | GK24208-PA | 1..561 | 1..556 | 2375 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18844-PA | 556 | GE18844-PA | 1..556 | 1..556 | 2924 | 98.6 | Plus |
Dyak\GE14752-PA | 132 | GE14752-PA | 12..132 | 436..556 | 539 | 96.7 | Plus |
Dyak\GE25448-PA | 132 | GE25448-PA | 12..132 | 436..556 | 538 | 96.7 | Plus |
Translation from 713 to 2383
> RE15808.hyp MGNSSSHTHEPLERGFTRGKFGDVKNGKSASFRFSKKSPKKMDRLRRSFR DSFRRRKDRVPESSKPHQWQADEEAVRSATCSFSVKYLGCVEVFESRGMQ VCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVSFC APDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLE RKQRRDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMATVGTNERSVD GPGSAMPGPPAATVKPFNPFAIERPHATPNMLERQSSFRLSTIGSQSPFK RQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRSVSPIAEVSPAKSAGA DPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLNFNNNRSINQ NIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQSIET STELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASGTGAAVGGGG PDDPFDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPFISPPKAPAQ SFQVQL*