Clone RE15838 Report

Search the DGRC for RE15838

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:158
Well:38
Vector:pFlc-1
Associated Gene/TranscriptCG6345-RA
Protein status:RE15838.pep: gold
Sequenced Size:1801

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6345 2001-12-14 Blastp of sequenced clone
CG6345 2002-01-01 Sim4 clustering to Release 2
CG6345 2003-01-01 Sim4 clustering to Release 3
CG6345 2008-04-29 Release 5.5 accounting
CG6345 2008-08-15 Release 5.9 accounting
CG6345 2008-12-18 5.12 accounting

Clone Sequence Records

RE15838.complete Sequence

1801 bp (1801 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071094

> RE15838.complete
ATAATTAAATAACTGCCATGAAAATAAGCTACCGGGCATTTGTTCGCCAA
GTGCGGCATGCCTCCACGACTGCCTCGAAAGGAGCTACGACATCCGTTAC
CTCCAGCGCAGCGGGTCAACTAAAATCAGAGCCGGCAGCACGTGCAACTT
TTCTGGAGAGGATTCAACGCGGACCGGGCTTCCAAGACTTTTTTGCGGTC
AAGCCTGCGTCAAGACTGAAAACTGATGAAGAGGAGCATGTGGACACCAG
TGTGCCGTACCTGAACTCGATTGATTTCAATGGAAACGGAAGGAAGGTCC
ACTTTGAGGTCTACGGATGCCAGATGAACACGAATGACACGGAGGTGGTG
TTCAGTATCCTGAAGGAGAATGGTTATTTGAGATGCCAGGAGCCGGAGGA
GGCCGATGTCATAATGCTCGTAACGTGCGCAGTGCGCGATGGAGCGGAGC
AGAGGATCAGGAACCGATTGAAGCACCTGCGAGCCATGAAGAACAAACGC
AGTACGCGGAGGCATCCTCTACAGCTGACACTGCTGGGTTGCATGGCGGA
GCGACTAAAGGAGAAGCTGCTGGAACAGGAGCAATGTGTGGATGTAATCG
CCGGACCCGATAGCTACAAGGATTTGCCGCGACTACTGGCTATCTCCCGG
CATTATGGCAACTCGGCCATCAATGTGCTCCTCTCGCTGGACGAAACCTA
TGCGGATGTGATGCCCGTTCGCTTAAACTCCGAATCGCCCACTGCTTTTG
TGTCCATCATGCGCGGTTGTGACAACATGTGTACCTATTGTATAGTGCCC
TTCACCCGTGGACGCGAGCGCTCTCGCCCCCTGGCATCCATTGTGGCTGA
GGTCAAGGCATTGGCGGAACAGGGCGTGAAGGAGGTCACCCTGCTGGGTC
AGAATGTCAACTCGTACAGAGACAGAACTGCGCAGGAGGAACAGGACTCA
CTGAAAGCAACTCCAGTGCCCGGTTTTAGCACTGTTTACAAGCCCAAAAC
AGGCGGGACTCCCTTTGCAGCATTGCTCCGATCCGTGGCTCAAGCTGTTC
CAGACATGCGCATCCGTTTCACCTCGCCGCATCCGAAGGATTTCTCCGAC
GAAGTTCTGGAGGTCATCAGAGATCACCCGAATGTGTGCAAGCAACTTCA
CCTGCCAGCACAATCGGGCAATACCCAAGTTCTGGAAAGGATGCGACGTG
GTTACAGCAGAGAGGCTTATCTGGAACTTGTGCAGCACATCAGACAGTTT
TTGCCCAACGTGGGTCTGTCCAGCGATTTTATCTGCGGCTTTTGCGGTGA
AACGGAAGAGGAGTTCCAAGACACTGTATCTCTTATCCAACAAGTGCAGT
ACAACGTGGCCTACTTGTTCGCCTACAGCATGCGAGAAAAGACCACTGCC
CATCGGCGCTACAAAGATGATGTGCCCATAAACGTGAAGAATGAGCGACT
GCAGCGCATGGTCCAGGTTTTCCGAGAGGGAGCTACACAGCTACATCGTA
AAATGGAAGGCCAGGAGCAGCTCATACTTATAGAAGGGAAAAGCAAGAGG
TCCGATGCTCACTGGTTCGGTCGGAATGATGCCAATATCAAGGTCATAGT
TCCTTCTATATATGTACCCATATCTGGAGATTCCACAGCCAGAAAATCGT
TTGGAGTAGGTGACTTTTTGGCCGTCCGCATTGAGGAATCCAACTCACAG
GTGCTGAAGGGCACGCCCCTCGAGCTGAGCAACATAACCGACTTTCACAG
CAGACAGTTAATACAATAAAATGAGCTTTAATCGCAAAAAAAAAAAAAAA
A

RE15838.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6345-RA 1827 CG6345-RA 44..1827 1..1784 8890 99.8 Plus
Rrp46-RA 877 Rrp46-RA 839..877 1784..1746 195 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6239930..6241713 1784..1 8770 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10414218..10416001 1784..1 8890 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10155049..10156832 1784..1 8890 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 02:26:05 has no hits.

RE15838.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:27:03 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6239929..6241713 1..1785 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:37 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
CG6345-RA 1..1752 18..1769 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:04:41 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
CG6345-RA 1..1752 18..1769 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:53 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
CG6345-RA 1..1752 18..1769 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:29:24 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
CG6345-RA 1..1752 18..1769 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:10:19 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
CG6345-RA 1..1752 18..1769 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:32:16 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
CG6345-RA 44..1827 1..1784 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:04:41 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
CG6345-RA 44..1827 1..1784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:53 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
CG6345-RA 46..1829 1..1784 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:29:24 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
CG6345-RA 44..1827 1..1784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:10:19 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
CG6345-RA 46..1829 1..1784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:27:03 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10414217..10416001 1..1785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:27:03 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10414217..10416001 1..1785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:27:03 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10414217..10416001 1..1785 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:53 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6239939..6241723 1..1785 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:05:22 Download gff for RE15838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10155048..10156832 1..1785 99   Minus

RE15838.pep Sequence

Translation from 17 to 1768

> RE15838.pep
MKISYRAFVRQVRHASTTASKGATTSVTSSAAGQLKSEPAARATFLERIQ
RGPGFQDFFAVKPASRLKTDEEEHVDTSVPYLNSIDFNGNGRKVHFEVYG
CQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNR
LKHLRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSY
KDLPRLLAISRHYGNSAINVLLSLDETYADVMPVRLNSESPTAFVSIMRG
CDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVTLLGQNVNSY
RDRTAQEEQDSLKATPVPGFSTVYKPKTGGTPFAALLRSVAQAVPDMRIR
FTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRGYSREA
YLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYL
FAYSMREKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQE
QLILIEGKSKRSDAHWFGRNDANIKVIVPSIYVPISGDSTARKSFGVGDF
LAVRIEESNSQVLKGTPLELSNITDFHSRQLIQ*

RE15838.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17521-PA 577 GF17521-PA 1..572 1..576 2390 77.4 Plus
Dana\GF11786-PA 557 GF11786-PA 48..474 66..529 320 23.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17285-PA 586 GG17285-PA 1..586 1..583 2960 93.3 Plus
Dere\GG22199-PA 557 GG22199-PA 48..473 66..529 326 25.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19109-PA 647 GH19109-PA 88..646 25..578 2321 75.1 Plus
Dgri\GH20489-PA 554 GH20489-PA 73..473 92..529 343 24.7 Plus
Dgri\GH23519-PA 214 GH23519-PA 1..133 392..529 158 26.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6345-PA 583 CG6345-PA 1..583 1..583 2993 100 Plus
CG6550-PA 552 CG6550-PA 42..472 62..529 339 23.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23564-PA 588 GI23564-PA 1..586 1..578 2277 72.2 Plus
Dmoj\GI21033-PA 554 GI21033-PA 74..474 92..529 304 25.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23830-PA 589 GL23830-PA 1..583 1..579 2413 77.1 Plus
Dper\GL10666-PA 553 GL10666-PA 72..472 92..529 274 24.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19527-PA 589 GA19527-PA 1..583 1..579 2399 76.8 Plus
Dpse\GA19679-PA 553 GA19679-PA 72..530 92..583 276 24.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26169-PA 583 GM26169-PA 1..583 1..583 3048 96.9 Plus
Dsec\GM19985-PA 556 GM19985-PA 48..472 66..529 330 24.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20720-PA 583 GD20720-PA 1..583 1..583 3052 97.3 Plus
Dsim\GD25482-PA 556 GD25482-PA 48..472 66..529 332 24.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17100-PA 283 GJ17100-PA 45..251 37..242 878 74.9 Plus
Dvir\GJ23539-PA 189 GJ23539-PA 1..189 392..579 744 72.5 Plus
Dvir\GJ21959-PA 553 GJ21959-PA 74..474 92..529 333 24.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11551-PA 576 GK11551-PA 19..575 29..579 2406 79.2 Plus
Dwil\GK17257-PA 570 GK17257-PA 43..476 62..529 326 24.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24685-PA 583 GE24685-PA 1..583 1..583 2948 93.7 Plus
Dyak\GE14196-PA 552 GE14196-PA 48..472 66..529 284 24.2 Plus

RE15838.hyp Sequence

Translation from 17 to 1768

> RE15838.hyp
MKISYRAFVRQVRHASTTASKGATTSVTSSAAGQLKSEPAARATFLERIQ
RGPGFQDFFAVKPASRLKTDEEEHVDTSVPYLNSIDFNGNGRKVHFEVYG
CQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNR
LKHLRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSY
KDLPRLLAISRHYGNSAINVLLSLDETYADVMPVRLNSESPTAFVSIMRG
CDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVTLLGQNVNSY
RDRTAQEEQDSLKATPVPGFSTVYKPKTGGTPFAALLRSVAQAVPDMRIR
FTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRGYSREA
YLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYL
FAYSMREKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQE
QLILIEGKSKRSDAHWFGRNDANIKVIVPSIYVPISGDSTARKSFGVGDF
LAVRIEESNSQVLKGTPLELSNITDFHSRQLIQ*

RE15838.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6345-PA 583 CG6345-PA 1..583 1..583 2993 100 Plus
CG6550-PA 552 CG6550-PA 42..472 62..529 339 23.2 Plus