BDGP Sequence Production Resources |
Search the DGRC for RE15838
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 158 |
Well: | 38 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6345-RA |
Protein status: | RE15838.pep: gold |
Sequenced Size: | 1801 |
Gene | Date | Evidence |
---|---|---|
CG6345 | 2001-12-14 | Blastp of sequenced clone |
CG6345 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6345 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6345 | 2008-04-29 | Release 5.5 accounting |
CG6345 | 2008-08-15 | Release 5.9 accounting |
CG6345 | 2008-12-18 | 5.12 accounting |
1801 bp (1801 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071094
> RE15838.complete ATAATTAAATAACTGCCATGAAAATAAGCTACCGGGCATTTGTTCGCCAA GTGCGGCATGCCTCCACGACTGCCTCGAAAGGAGCTACGACATCCGTTAC CTCCAGCGCAGCGGGTCAACTAAAATCAGAGCCGGCAGCACGTGCAACTT TTCTGGAGAGGATTCAACGCGGACCGGGCTTCCAAGACTTTTTTGCGGTC AAGCCTGCGTCAAGACTGAAAACTGATGAAGAGGAGCATGTGGACACCAG TGTGCCGTACCTGAACTCGATTGATTTCAATGGAAACGGAAGGAAGGTCC ACTTTGAGGTCTACGGATGCCAGATGAACACGAATGACACGGAGGTGGTG TTCAGTATCCTGAAGGAGAATGGTTATTTGAGATGCCAGGAGCCGGAGGA GGCCGATGTCATAATGCTCGTAACGTGCGCAGTGCGCGATGGAGCGGAGC AGAGGATCAGGAACCGATTGAAGCACCTGCGAGCCATGAAGAACAAACGC AGTACGCGGAGGCATCCTCTACAGCTGACACTGCTGGGTTGCATGGCGGA GCGACTAAAGGAGAAGCTGCTGGAACAGGAGCAATGTGTGGATGTAATCG CCGGACCCGATAGCTACAAGGATTTGCCGCGACTACTGGCTATCTCCCGG CATTATGGCAACTCGGCCATCAATGTGCTCCTCTCGCTGGACGAAACCTA TGCGGATGTGATGCCCGTTCGCTTAAACTCCGAATCGCCCACTGCTTTTG TGTCCATCATGCGCGGTTGTGACAACATGTGTACCTATTGTATAGTGCCC TTCACCCGTGGACGCGAGCGCTCTCGCCCCCTGGCATCCATTGTGGCTGA GGTCAAGGCATTGGCGGAACAGGGCGTGAAGGAGGTCACCCTGCTGGGTC AGAATGTCAACTCGTACAGAGACAGAACTGCGCAGGAGGAACAGGACTCA CTGAAAGCAACTCCAGTGCCCGGTTTTAGCACTGTTTACAAGCCCAAAAC AGGCGGGACTCCCTTTGCAGCATTGCTCCGATCCGTGGCTCAAGCTGTTC CAGACATGCGCATCCGTTTCACCTCGCCGCATCCGAAGGATTTCTCCGAC GAAGTTCTGGAGGTCATCAGAGATCACCCGAATGTGTGCAAGCAACTTCA CCTGCCAGCACAATCGGGCAATACCCAAGTTCTGGAAAGGATGCGACGTG GTTACAGCAGAGAGGCTTATCTGGAACTTGTGCAGCACATCAGACAGTTT TTGCCCAACGTGGGTCTGTCCAGCGATTTTATCTGCGGCTTTTGCGGTGA AACGGAAGAGGAGTTCCAAGACACTGTATCTCTTATCCAACAAGTGCAGT ACAACGTGGCCTACTTGTTCGCCTACAGCATGCGAGAAAAGACCACTGCC CATCGGCGCTACAAAGATGATGTGCCCATAAACGTGAAGAATGAGCGACT GCAGCGCATGGTCCAGGTTTTCCGAGAGGGAGCTACACAGCTACATCGTA AAATGGAAGGCCAGGAGCAGCTCATACTTATAGAAGGGAAAAGCAAGAGG TCCGATGCTCACTGGTTCGGTCGGAATGATGCCAATATCAAGGTCATAGT TCCTTCTATATATGTACCCATATCTGGAGATTCCACAGCCAGAAAATCGT TTGGAGTAGGTGACTTTTTGGCCGTCCGCATTGAGGAATCCAACTCACAG GTGCTGAAGGGCACGCCCCTCGAGCTGAGCAACATAACCGACTTTCACAG CAGACAGTTAATACAATAAAATGAGCTTTAATCGCAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 6239930..6241713 | 1784..1 | 8770 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10414218..10416001 | 1784..1 | 8890 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 10155049..10156832 | 1784..1 | 8890 | 99.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6239929..6241713 | 1..1785 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6345-RA | 1..1752 | 18..1769 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6345-RA | 1..1752 | 18..1769 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6345-RA | 1..1752 | 18..1769 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6345-RA | 1..1752 | 18..1769 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6345-RA | 1..1752 | 18..1769 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6345-RA | 44..1827 | 1..1784 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6345-RA | 44..1827 | 1..1784 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6345-RA | 46..1829 | 1..1784 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6345-RA | 44..1827 | 1..1784 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6345-RA | 46..1829 | 1..1784 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10414217..10416001 | 1..1785 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10414217..10416001 | 1..1785 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10414217..10416001 | 1..1785 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6239939..6241723 | 1..1785 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10155048..10156832 | 1..1785 | 99 | Minus |
Translation from 17 to 1768
> RE15838.pep MKISYRAFVRQVRHASTTASKGATTSVTSSAAGQLKSEPAARATFLERIQ RGPGFQDFFAVKPASRLKTDEEEHVDTSVPYLNSIDFNGNGRKVHFEVYG CQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNR LKHLRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSY KDLPRLLAISRHYGNSAINVLLSLDETYADVMPVRLNSESPTAFVSIMRG CDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVTLLGQNVNSY RDRTAQEEQDSLKATPVPGFSTVYKPKTGGTPFAALLRSVAQAVPDMRIR FTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRGYSREA YLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYL FAYSMREKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQE QLILIEGKSKRSDAHWFGRNDANIKVIVPSIYVPISGDSTARKSFGVGDF LAVRIEESNSQVLKGTPLELSNITDFHSRQLIQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17521-PA | 577 | GF17521-PA | 1..572 | 1..576 | 2390 | 77.4 | Plus |
Dana\GF11786-PA | 557 | GF11786-PA | 48..474 | 66..529 | 320 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17285-PA | 586 | GG17285-PA | 1..586 | 1..583 | 2960 | 93.3 | Plus |
Dere\GG22199-PA | 557 | GG22199-PA | 48..473 | 66..529 | 326 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19109-PA | 647 | GH19109-PA | 88..646 | 25..578 | 2321 | 75.1 | Plus |
Dgri\GH20489-PA | 554 | GH20489-PA | 73..473 | 92..529 | 343 | 24.7 | Plus |
Dgri\GH23519-PA | 214 | GH23519-PA | 1..133 | 392..529 | 158 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6345-PA | 583 | CG6345-PA | 1..583 | 1..583 | 2993 | 100 | Plus |
CG6550-PA | 552 | CG6550-PA | 42..472 | 62..529 | 339 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23564-PA | 588 | GI23564-PA | 1..586 | 1..578 | 2277 | 72.2 | Plus |
Dmoj\GI21033-PA | 554 | GI21033-PA | 74..474 | 92..529 | 304 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23830-PA | 589 | GL23830-PA | 1..583 | 1..579 | 2413 | 77.1 | Plus |
Dper\GL10666-PA | 553 | GL10666-PA | 72..472 | 92..529 | 274 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19527-PA | 589 | GA19527-PA | 1..583 | 1..579 | 2399 | 76.8 | Plus |
Dpse\GA19679-PA | 553 | GA19679-PA | 72..530 | 92..583 | 276 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26169-PA | 583 | GM26169-PA | 1..583 | 1..583 | 3048 | 96.9 | Plus |
Dsec\GM19985-PA | 556 | GM19985-PA | 48..472 | 66..529 | 330 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20720-PA | 583 | GD20720-PA | 1..583 | 1..583 | 3052 | 97.3 | Plus |
Dsim\GD25482-PA | 556 | GD25482-PA | 48..472 | 66..529 | 332 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17100-PA | 283 | GJ17100-PA | 45..251 | 37..242 | 878 | 74.9 | Plus |
Dvir\GJ23539-PA | 189 | GJ23539-PA | 1..189 | 392..579 | 744 | 72.5 | Plus |
Dvir\GJ21959-PA | 553 | GJ21959-PA | 74..474 | 92..529 | 333 | 24.9 | Plus |
Translation from 17 to 1768
> RE15838.hyp MKISYRAFVRQVRHASTTASKGATTSVTSSAAGQLKSEPAARATFLERIQ RGPGFQDFFAVKPASRLKTDEEEHVDTSVPYLNSIDFNGNGRKVHFEVYG CQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNR LKHLRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSY KDLPRLLAISRHYGNSAINVLLSLDETYADVMPVRLNSESPTAFVSIMRG CDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVTLLGQNVNSY RDRTAQEEQDSLKATPVPGFSTVYKPKTGGTPFAALLRSVAQAVPDMRIR FTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRGYSREA YLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYL FAYSMREKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQE QLILIEGKSKRSDAHWFGRNDANIKVIVPSIYVPISGDSTARKSFGVGDF LAVRIEESNSQVLKGTPLELSNITDFHSRQLIQ*