Clone RE15841 Report

Search the DGRC for RE15841

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:158
Well:41
Vector:pFlc-1
Associated Gene/TranscriptZip42C.1-RA
Protein status:RE15841.pep: gold
Preliminary Size:1059
Sequenced Size:1406

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9428 2001-12-14 Blastp of sequenced clone
CG9428 2002-01-01 Sim4 clustering to Release 2
CG9428 2003-01-01 Sim4 clustering to Release 3
ZIP1 2008-04-29 Release 5.5 accounting
ZIP1 2008-08-15 Release 5.9 accounting
ZIP1 2008-12-18 5.12 accounting

Clone Sequence Records

RE15841.complete Sequence

1406 bp (1406 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071095

> RE15841.complete
AGTGAATCCGCGTATCAATCAGCGATCAGATTTCAATCGGCTCCCGCTGA
TATATGACTGGAAATATAAACCATTAGCCTGGTTGTGAGTTCCAGCCAGC
ACAGTCGAAGCTATCAACTCGGGAGGTGAAGATGAGCGCTACCGCAACTA
TGTCACAAGAGCAAACGCAAGACGTGGATCACCATGCGCTGCTGGTGGCC
AAAATAGTTTCCATGGTGGTGCTCGTGGTGATCACCGTGCTTTGCGGCAG
CCTTCCCTACGTCCTGAACAGGTGCTTCCATTGGACGAAGGCGAGTCCGG
AGGAAACCCGCTCGTCATTGGTGGTGCGGTGCCTACTCTTTTTCGGCGGC
GGTGTGCTCATCTGCACCACCTTCCTGCACATGCTGCCCGAGGTGATCGA
GGTGGTGGAAGCGCTCCAGGAATGCGGCTCGCTTGTCAAGACGCCCTTCG
CTCTGGCGGAGATGCTGCTGTGCACGGGCTTTTTCCTGATGTACGCGTTG
GACGAGCTGATGACCAGCCTCGTGCGGCACCACCAGGGAAAGCTTAGTCG
GAAAGAGTCGGTGGCCAGTCTGGCTTTCGAAAGAGGACGCAGCATTCGTC
ACAGTGTTCTCCTCAATCCACAGGCGAAGGAAGAAGTGGAAGTTAAGGAT
ACGGAACCGCAGCCACACAAGGATCACCACGGCCACTCGCACATGCCCGT
GCCAGCGGACGATGGATCCTCTGCCAGGGGGCTGGGCATTATCCTCGCCC
TTTCGCTCCACGAACTGTTCGAGGGCATGGCCATTGGTCTGGAGGGCACT
GTGAGCACTGTGTGGTTCATGTTTGGAGCGGTCTCCGCCCACAAGTTGGT
GTTGGCCTTCTGCGTGGGTATGGAGCTTCTGGTCGCCCGCACACGCAGTT
CGCTGGCCATCTTGTACCTGGTGACATTCTCCATTGTTACACCCATCGGT
ATCGGTGTTGGCCTCGGCATCAGCCAGCAGGTGGCAGCGGGTCAGCCCAG
TCTGCCATCCGGAGTCCTCCAGGGCATCGCCTGTGGAACCTTGCTGTACG
TAGTCTTCTTTGAGATCCTCATTGAGAGCCATGCCGGATGGAGGGCCCTT
GTGGCCGCCGTTGCGGGATTCGCTCTAATGTTTGGCCTTCAAATTCTTTC
TGACGAAGCGGAGGGTGATGACAGCCTAACCTGTTCCTAGCCAGTGTGAC
GCCACTTCAGTATTATCAAGTTATAGAGGAAGCAACAAAATAGTATACAA
AACGATTCCCTGGGGATCTGTAAAAGTTATTATATAAAATACGAATAGAA
TTTCAAAAGAGGTTTCTCAGAAATCTTATCCAACGCAAATAATTAAAAAT
GTAATAACCATATGGATTAAAAGAGACAATATTTTACTCTAAAAAAAAAA
AAAAAA

RE15841.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
ZIP1-RA 1612 ZIP1-RA 223..1610 1..1388 6940 100 Plus
CG9430-RA 918 CG9430-RA 148..321 321..494 270 77 Plus
CG9430.a 961 CG9430.a 148..321 321..494 270 77 Plus
CG9430-RA 918 CG9430-RA 490..618 747..875 255 79.8 Plus
CG9430.a 961 CG9430.a 490..618 747..875 255 79.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2603870..2605021 1153..2 5715 99.7 Minus
chr2R 21145070 chr2R 2603559..2603797 1388..1150 1195 100 Minus
chr2R 21145070 chr2R 2606428..2606601 494..321 270 77 Minus
chr2R 21145070 chr2R 2606131..2606259 875..747 255 79.8 Minus
chr3R 27901430 chr3R 12131657..12131779 746..868 255 80.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6716655..6717807 1153..1 5750 99.9 Minus
2R 25286936 2R 6716344..6716582 1388..1150 1195 100 Minus
2R 25286936 2R 6719213..6719386 494..321 270 77 Minus
2R 25286936 2R 6718916..6719044 875..747 255 79.8 Minus
3R 32079331 3R 16306995..16307117 746..868 255 80.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6717854..6719006 1153..1 5750 99.9 Minus
2R 25260384 2R 6717543..6717781 1388..1150 1195 100 Minus
2R 25260384 2R 6720412..6720585 494..321 270 77 Minus
2R 25260384 2R 6720115..6720243 875..747 255 79.8 Minus
3R 31820162 3R 16047826..16047948 746..868 255 80.4 Plus
Blast to na_te.dros performed on 2019-03-15 19:34:20 has no hits.

RE15841.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:35:04 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2603557..2603797 1150..1390 99 <- Minus
chr2R 2603874..2605021 1..1149 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:38 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
ZIP1-RA 1..1059 132..1190 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:14:50 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
ZIP1-RA 1..1059 132..1190 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:54:29 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
ZIP1-RA 1..1059 132..1190 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:40:03 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
ZIP1-RA 1..1059 132..1190 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:02 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
Zip42C.1-RA 1..1059 132..1190 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:46:30 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
ZIP1-RA 1..1389 1..1390 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:14:50 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
ZIP1-RA 1..1389 1..1390 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:54:29 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
ZIP1-RA 1..1289 101..1390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:40:03 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
ZIP1-RA 1..1387 1..1387 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:02 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
Zip42C.1-RA 1..1289 101..1390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:35:04 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6716342..6716582 1150..1390 99 <- Minus
2R 6716659..6717807 1..1149 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:35:04 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6716342..6716582 1150..1390 99 <- Minus
2R 6716659..6717807 1..1149 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:35:04 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6716342..6716582 1150..1390 99 <- Minus
2R 6716659..6717807 1..1149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:54:29 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2603847..2604087 1150..1390 99 <- Minus
arm_2R 2604164..2605312 1..1149 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:16:50 Download gff for RE15841.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6717541..6717781 1150..1390 99 <- Minus
2R 6717858..6719006 1..1149 100   Minus

RE15841.pep Sequence

Translation from 131 to 1189

> RE15841.pep
MSATATMSQEQTQDVDHHALLVAKIVSMVVLVVITVLCGSLPYVLNRCFH
WTKASPEETRSSLVVRCLLFFGGGVLICTTFLHMLPEVIEVVEALQECGS
LVKTPFALAEMLLCTGFFLMYALDELMTSLVRHHQGKLSRKESVASLAFE
RGRSIRHSVLLNPQAKEEVEVKDTEPQPHKDHHGHSHMPVPADDGSSARG
LGIILALSLHELFEGMAIGLEGTVSTVWFMFGAVSAHKLVLAFCVGMELL
VARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPSLPSGVLQGIA
CGTLLYVVFFEILIESHAGWRALVAAVAGFALMFGLQILSDEAEGDDSLT
CS*

RE15841.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13796-PA 350 GF13796-PA 1..350 1..352 1410 77.8 Plus
Dana\GF18487-PA 495 GF18487-PA 49..410 19..340 873 51.2 Plus
Dana\GF13795-PA 300 GF13795-PA 1..298 15..351 786 49.6 Plus
Dana\GF11431-PA 354 GF11431-PA 3..354 1..342 247 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10806-PA 352 GG10806-PA 1..352 1..352 1683 92.3 Plus
Dere\GG16992-PA 494 GG16992-PA 53..411 20..340 861 50.5 Plus
Dere\GG10805-PA 213 GG10805-PA 1..199 120..352 535 49.4 Plus
Dere\GG16905-PA 366 GG16905-PA 56..365 60..342 241 28.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20144-PA 362 GH20144-PA 21..362 15..352 1277 75.4 Plus
Dgri\GH19543-PA 494 GH19543-PA 61..423 19..337 829 50.9 Plus
Dgri\GH20143-PA 335 GH20143-PA 1..333 15..338 807 50.9 Plus
Dgri\GH18854-PA 359 GH18854-PA 43..343 57..334 254 27 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Zip42C.1-PA 352 CG9428-PA 1..352 1..352 1785 100 Plus
Zip89B-PA 495 CG6898-PA 42..410 10..340 901 51.3 Plus
Zip42C.2-PB 310 CG9430-PB 2..309 15..351 853 51.9 Plus
Zip88E-PB 366 CG4334-PB 28..365 24..342 287 27.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16967-PA 287 GI16967-PA 8..272 8..267 969 72.6 Plus
Dmoj\GI22942-PA 494 GI22942-PA 63..418 19..337 848 50.5 Plus
Dmoj\GI20235-PA 343 GI20235-PA 1..302 15..338 809 52 Plus
Dmoj\GI22925-PA 353 GI22925-PA 46..343 57..333 281 28.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10983-PA 365 GL10983-PA 14..364 7..351 1268 75.7 Plus
Dper\GL21597-PA 504 GL21597-PA 55..413 19..337 842 50.1 Plus
Dper\GL10982-PA 314 GL10982-PA 4..313 18..351 796 51.5 Plus
Dper\GL12539-PA 350 GL12539-PA 11..349 24..342 260 25.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21780-PA 365 GA21780-PA 14..364 7..351 1268 75.7 Plus
Dpse\GA19939-PA 498 GA19939-PA 50..407 20..337 843 50.3 Plus
Dpse\GA21782-PA 314 GA21782-PA 4..313 18..351 795 51.5 Plus
Dpse\GA18116-PA 350 GA18116-PA 11..349 24..342 260 25.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20857-PA 350 GM20857-PA 1..350 1..352 1757 96 Plus
Dsec\GM15144-PA 494 GM15144-PA 51..409 20..340 864 52.2 Plus
Dsec\GM20856-PA 291 GM20856-PA 2..290 15..351 765 47.8 Plus
Dsec\GM24213-PA 357 GM24213-PA 44..356 57..342 245 29.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24343-PA 352 GD24343-PA 1..352 1..352 1785 96.9 Plus
Dsim\GD19087-PA 496 GD19087-PA 53..411 20..340 861 51.9 Plus
Dsim\GD15477-PA 310 GD15477-PA 2..309 15..351 855 52.2 Plus
Dsim\GD19003-PA 774 GD19003-PA 53..355 57..333 235 26.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20186-PA 370 GJ20186-PA 18..370 12..352 1298 74.3 Plus
Dvir\GJ20185-PA 316 GJ20185-PA 1..306 15..351 833 52.5 Plus
Dvir\GJ23722-PA 501 GJ23722-PA 63..199 19..162 385 54.5 Plus
Dvir\GJ23208-PA 361 GJ23208-PA 3..351 1..333 286 26.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22157-PA 351 GK22157-PA 1..351 15..352 1273 76.1 Plus
Dwil\GK22156-PA 323 GK22156-PA 3..321 16..351 837 51.2 Plus
Dwil\GK13772-PA 502 GK13772-PA 278..421 196..339 481 66 Plus
Dwil\GK13772-PA 502 GK13772-PA 51..191 19..176 397 50 Plus
Dwil\GK13793-PA 357 GK13793-PA 29..347 24..333 258 26.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24554-PA 352 GE24554-PA 1..352 1..352 1614 90.6 Plus
Dyak\GE24385-PA 496 GE24385-PA 51..409 20..340 856 51.9 Plus
Dyak\GE24543-PA 301 GE24543-PA 2..300 15..351 834 52.8 Plus
Dyak\GE24287-PA 366 GE24287-PA 56..365 60..342 240 27.9 Plus

RE15841.hyp Sequence

Translation from 131 to 1189

> RE15841.hyp
MSATATMSQEQTQDVDHHALLVAKIVSMVVLVVITVLCGSLPYVLNRCFH
WTKASPEETRSSLVVRCLLFFGGGVLICTTFLHMLPEVIEVVEALQECGS
LVKTPFALAEMLLCTGFFLMYALDELMTSLVRHHQGKLSRKESVASLAFE
RGRSIRHSVLLNPQAKEEVEVKDTEPQPHKDHHGHSHMPVPADDGSSARG
LGIILALSLHELFEGMAIGLEGTVSTVWFMFGAVSAHKLVLAFCVGMELL
VARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPSLPSGVLQGIA
CGTLLYVVFFEILIESHAGWRALVAAVAGFALMFGLQILSDEAEGDDSLT
CS*

RE15841.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Zip42C.1-PA 352 CG9428-PA 1..352 1..352 1785 100 Plus
Zip89B-PA 495 CG6898-PA 42..410 10..340 901 51.3 Plus
Zip42C.2-PB 310 CG9430-PB 2..309 15..351 853 51.9 Plus
Zip88E-PB 366 CG4334-PB 28..365 24..342 287 27.9 Plus