BDGP Sequence Production Resources |
Search the DGRC for RE15841
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 158 |
Well: | 41 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Zip42C.1-RA |
Protein status: | RE15841.pep: gold |
Preliminary Size: | 1059 |
Sequenced Size: | 1406 |
Gene | Date | Evidence |
---|---|---|
CG9428 | 2001-12-14 | Blastp of sequenced clone |
CG9428 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9428 | 2003-01-01 | Sim4 clustering to Release 3 |
ZIP1 | 2008-04-29 | Release 5.5 accounting |
ZIP1 | 2008-08-15 | Release 5.9 accounting |
ZIP1 | 2008-12-18 | 5.12 accounting |
1406 bp (1406 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071095
> RE15841.complete AGTGAATCCGCGTATCAATCAGCGATCAGATTTCAATCGGCTCCCGCTGA TATATGACTGGAAATATAAACCATTAGCCTGGTTGTGAGTTCCAGCCAGC ACAGTCGAAGCTATCAACTCGGGAGGTGAAGATGAGCGCTACCGCAACTA TGTCACAAGAGCAAACGCAAGACGTGGATCACCATGCGCTGCTGGTGGCC AAAATAGTTTCCATGGTGGTGCTCGTGGTGATCACCGTGCTTTGCGGCAG CCTTCCCTACGTCCTGAACAGGTGCTTCCATTGGACGAAGGCGAGTCCGG AGGAAACCCGCTCGTCATTGGTGGTGCGGTGCCTACTCTTTTTCGGCGGC GGTGTGCTCATCTGCACCACCTTCCTGCACATGCTGCCCGAGGTGATCGA GGTGGTGGAAGCGCTCCAGGAATGCGGCTCGCTTGTCAAGACGCCCTTCG CTCTGGCGGAGATGCTGCTGTGCACGGGCTTTTTCCTGATGTACGCGTTG GACGAGCTGATGACCAGCCTCGTGCGGCACCACCAGGGAAAGCTTAGTCG GAAAGAGTCGGTGGCCAGTCTGGCTTTCGAAAGAGGACGCAGCATTCGTC ACAGTGTTCTCCTCAATCCACAGGCGAAGGAAGAAGTGGAAGTTAAGGAT ACGGAACCGCAGCCACACAAGGATCACCACGGCCACTCGCACATGCCCGT GCCAGCGGACGATGGATCCTCTGCCAGGGGGCTGGGCATTATCCTCGCCC TTTCGCTCCACGAACTGTTCGAGGGCATGGCCATTGGTCTGGAGGGCACT GTGAGCACTGTGTGGTTCATGTTTGGAGCGGTCTCCGCCCACAAGTTGGT GTTGGCCTTCTGCGTGGGTATGGAGCTTCTGGTCGCCCGCACACGCAGTT CGCTGGCCATCTTGTACCTGGTGACATTCTCCATTGTTACACCCATCGGT ATCGGTGTTGGCCTCGGCATCAGCCAGCAGGTGGCAGCGGGTCAGCCCAG TCTGCCATCCGGAGTCCTCCAGGGCATCGCCTGTGGAACCTTGCTGTACG TAGTCTTCTTTGAGATCCTCATTGAGAGCCATGCCGGATGGAGGGCCCTT GTGGCCGCCGTTGCGGGATTCGCTCTAATGTTTGGCCTTCAAATTCTTTC TGACGAAGCGGAGGGTGATGACAGCCTAACCTGTTCCTAGCCAGTGTGAC GCCACTTCAGTATTATCAAGTTATAGAGGAAGCAACAAAATAGTATACAA AACGATTCCCTGGGGATCTGTAAAAGTTATTATATAAAATACGAATAGAA TTTCAAAAGAGGTTTCTCAGAAATCTTATCCAACGCAAATAATTAAAAAT GTAATAACCATATGGATTAAAAGAGACAATATTTTACTCTAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ZIP1-RA | 1612 | ZIP1-RA | 223..1610 | 1..1388 | 6940 | 100 | Plus |
CG9430-RA | 918 | CG9430-RA | 148..321 | 321..494 | 270 | 77 | Plus |
CG9430.a | 961 | CG9430.a | 148..321 | 321..494 | 270 | 77 | Plus |
CG9430-RA | 918 | CG9430-RA | 490..618 | 747..875 | 255 | 79.8 | Plus |
CG9430.a | 961 | CG9430.a | 490..618 | 747..875 | 255 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 2603870..2605021 | 1153..2 | 5715 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 2603559..2603797 | 1388..1150 | 1195 | 100 | Minus |
chr2R | 21145070 | chr2R | 2606428..2606601 | 494..321 | 270 | 77 | Minus |
chr2R | 21145070 | chr2R | 2606131..2606259 | 875..747 | 255 | 79.8 | Minus |
chr3R | 27901430 | chr3R | 12131657..12131779 | 746..868 | 255 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 6716655..6717807 | 1153..1 | 5750 | 99.9 | Minus |
2R | 25286936 | 2R | 6716344..6716582 | 1388..1150 | 1195 | 100 | Minus |
2R | 25286936 | 2R | 6719213..6719386 | 494..321 | 270 | 77 | Minus |
2R | 25286936 | 2R | 6718916..6719044 | 875..747 | 255 | 79.8 | Minus |
3R | 32079331 | 3R | 16306995..16307117 | 746..868 | 255 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 6717854..6719006 | 1153..1 | 5750 | 99.9 | Minus |
2R | 25260384 | 2R | 6717543..6717781 | 1388..1150 | 1195 | 100 | Minus |
2R | 25260384 | 2R | 6720412..6720585 | 494..321 | 270 | 77 | Minus |
2R | 25260384 | 2R | 6720115..6720243 | 875..747 | 255 | 79.8 | Minus |
3R | 31820162 | 3R | 16047826..16047948 | 746..868 | 255 | 80.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 2603557..2603797 | 1150..1390 | 99 | <- | Minus |
chr2R | 2603874..2605021 | 1..1149 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ZIP1-RA | 1..1059 | 132..1190 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ZIP1-RA | 1..1059 | 132..1190 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ZIP1-RA | 1..1059 | 132..1190 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ZIP1-RA | 1..1059 | 132..1190 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Zip42C.1-RA | 1..1059 | 132..1190 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ZIP1-RA | 1..1389 | 1..1390 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ZIP1-RA | 1..1389 | 1..1390 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ZIP1-RA | 1..1289 | 101..1390 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ZIP1-RA | 1..1387 | 1..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Zip42C.1-RA | 1..1289 | 101..1390 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6716342..6716582 | 1150..1390 | 99 | <- | Minus |
2R | 6716659..6717807 | 1..1149 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6716342..6716582 | 1150..1390 | 99 | <- | Minus |
2R | 6716659..6717807 | 1..1149 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6716342..6716582 | 1150..1390 | 99 | <- | Minus |
2R | 6716659..6717807 | 1..1149 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 2603847..2604087 | 1150..1390 | 99 | <- | Minus |
arm_2R | 2604164..2605312 | 1..1149 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6717541..6717781 | 1150..1390 | 99 | <- | Minus |
2R | 6717858..6719006 | 1..1149 | 100 | Minus |
Translation from 131 to 1189
> RE15841.pep MSATATMSQEQTQDVDHHALLVAKIVSMVVLVVITVLCGSLPYVLNRCFH WTKASPEETRSSLVVRCLLFFGGGVLICTTFLHMLPEVIEVVEALQECGS LVKTPFALAEMLLCTGFFLMYALDELMTSLVRHHQGKLSRKESVASLAFE RGRSIRHSVLLNPQAKEEVEVKDTEPQPHKDHHGHSHMPVPADDGSSARG LGIILALSLHELFEGMAIGLEGTVSTVWFMFGAVSAHKLVLAFCVGMELL VARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPSLPSGVLQGIA CGTLLYVVFFEILIESHAGWRALVAAVAGFALMFGLQILSDEAEGDDSLT CS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13796-PA | 350 | GF13796-PA | 1..350 | 1..352 | 1410 | 77.8 | Plus |
Dana\GF18487-PA | 495 | GF18487-PA | 49..410 | 19..340 | 873 | 51.2 | Plus |
Dana\GF13795-PA | 300 | GF13795-PA | 1..298 | 15..351 | 786 | 49.6 | Plus |
Dana\GF11431-PA | 354 | GF11431-PA | 3..354 | 1..342 | 247 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10806-PA | 352 | GG10806-PA | 1..352 | 1..352 | 1683 | 92.3 | Plus |
Dere\GG16992-PA | 494 | GG16992-PA | 53..411 | 20..340 | 861 | 50.5 | Plus |
Dere\GG10805-PA | 213 | GG10805-PA | 1..199 | 120..352 | 535 | 49.4 | Plus |
Dere\GG16905-PA | 366 | GG16905-PA | 56..365 | 60..342 | 241 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20144-PA | 362 | GH20144-PA | 21..362 | 15..352 | 1277 | 75.4 | Plus |
Dgri\GH19543-PA | 494 | GH19543-PA | 61..423 | 19..337 | 829 | 50.9 | Plus |
Dgri\GH20143-PA | 335 | GH20143-PA | 1..333 | 15..338 | 807 | 50.9 | Plus |
Dgri\GH18854-PA | 359 | GH18854-PA | 43..343 | 57..334 | 254 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Zip42C.1-PA | 352 | CG9428-PA | 1..352 | 1..352 | 1785 | 100 | Plus |
Zip89B-PA | 495 | CG6898-PA | 42..410 | 10..340 | 901 | 51.3 | Plus |
Zip42C.2-PB | 310 | CG9430-PB | 2..309 | 15..351 | 853 | 51.9 | Plus |
Zip88E-PB | 366 | CG4334-PB | 28..365 | 24..342 | 287 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16967-PA | 287 | GI16967-PA | 8..272 | 8..267 | 969 | 72.6 | Plus |
Dmoj\GI22942-PA | 494 | GI22942-PA | 63..418 | 19..337 | 848 | 50.5 | Plus |
Dmoj\GI20235-PA | 343 | GI20235-PA | 1..302 | 15..338 | 809 | 52 | Plus |
Dmoj\GI22925-PA | 353 | GI22925-PA | 46..343 | 57..333 | 281 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10983-PA | 365 | GL10983-PA | 14..364 | 7..351 | 1268 | 75.7 | Plus |
Dper\GL21597-PA | 504 | GL21597-PA | 55..413 | 19..337 | 842 | 50.1 | Plus |
Dper\GL10982-PA | 314 | GL10982-PA | 4..313 | 18..351 | 796 | 51.5 | Plus |
Dper\GL12539-PA | 350 | GL12539-PA | 11..349 | 24..342 | 260 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21780-PA | 365 | GA21780-PA | 14..364 | 7..351 | 1268 | 75.7 | Plus |
Dpse\GA19939-PA | 498 | GA19939-PA | 50..407 | 20..337 | 843 | 50.3 | Plus |
Dpse\GA21782-PA | 314 | GA21782-PA | 4..313 | 18..351 | 795 | 51.5 | Plus |
Dpse\GA18116-PA | 350 | GA18116-PA | 11..349 | 24..342 | 260 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20857-PA | 350 | GM20857-PA | 1..350 | 1..352 | 1757 | 96 | Plus |
Dsec\GM15144-PA | 494 | GM15144-PA | 51..409 | 20..340 | 864 | 52.2 | Plus |
Dsec\GM20856-PA | 291 | GM20856-PA | 2..290 | 15..351 | 765 | 47.8 | Plus |
Dsec\GM24213-PA | 357 | GM24213-PA | 44..356 | 57..342 | 245 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24343-PA | 352 | GD24343-PA | 1..352 | 1..352 | 1785 | 96.9 | Plus |
Dsim\GD19087-PA | 496 | GD19087-PA | 53..411 | 20..340 | 861 | 51.9 | Plus |
Dsim\GD15477-PA | 310 | GD15477-PA | 2..309 | 15..351 | 855 | 52.2 | Plus |
Dsim\GD19003-PA | 774 | GD19003-PA | 53..355 | 57..333 | 235 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20186-PA | 370 | GJ20186-PA | 18..370 | 12..352 | 1298 | 74.3 | Plus |
Dvir\GJ20185-PA | 316 | GJ20185-PA | 1..306 | 15..351 | 833 | 52.5 | Plus |
Dvir\GJ23722-PA | 501 | GJ23722-PA | 63..199 | 19..162 | 385 | 54.5 | Plus |
Dvir\GJ23208-PA | 361 | GJ23208-PA | 3..351 | 1..333 | 286 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22157-PA | 351 | GK22157-PA | 1..351 | 15..352 | 1273 | 76.1 | Plus |
Dwil\GK22156-PA | 323 | GK22156-PA | 3..321 | 16..351 | 837 | 51.2 | Plus |
Dwil\GK13772-PA | 502 | GK13772-PA | 278..421 | 196..339 | 481 | 66 | Plus |
Dwil\GK13772-PA | 502 | GK13772-PA | 51..191 | 19..176 | 397 | 50 | Plus |
Dwil\GK13793-PA | 357 | GK13793-PA | 29..347 | 24..333 | 258 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24554-PA | 352 | GE24554-PA | 1..352 | 1..352 | 1614 | 90.6 | Plus |
Dyak\GE24385-PA | 496 | GE24385-PA | 51..409 | 20..340 | 856 | 51.9 | Plus |
Dyak\GE24543-PA | 301 | GE24543-PA | 2..300 | 15..351 | 834 | 52.8 | Plus |
Dyak\GE24287-PA | 366 | GE24287-PA | 56..365 | 60..342 | 240 | 27.9 | Plus |
Translation from 131 to 1189
> RE15841.hyp MSATATMSQEQTQDVDHHALLVAKIVSMVVLVVITVLCGSLPYVLNRCFH WTKASPEETRSSLVVRCLLFFGGGVLICTTFLHMLPEVIEVVEALQECGS LVKTPFALAEMLLCTGFFLMYALDELMTSLVRHHQGKLSRKESVASLAFE RGRSIRHSVLLNPQAKEEVEVKDTEPQPHKDHHGHSHMPVPADDGSSARG LGIILALSLHELFEGMAIGLEGTVSTVWFMFGAVSAHKLVLAFCVGMELL VARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPSLPSGVLQGIA CGTLLYVVFFEILIESHAGWRALVAAVAGFALMFGLQILSDEAEGDDSLT CS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Zip42C.1-PA | 352 | CG9428-PA | 1..352 | 1..352 | 1785 | 100 | Plus |
Zip89B-PA | 495 | CG6898-PA | 42..410 | 10..340 | 901 | 51.3 | Plus |
Zip42C.2-PB | 310 | CG9430-PB | 2..309 | 15..351 | 853 | 51.9 | Plus |
Zip88E-PB | 366 | CG4334-PB | 28..365 | 24..342 | 287 | 27.9 | Plus |