BDGP Sequence Production Resources |
Search the DGRC for RE15880
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 158 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG14044-RA |
Protein status: | RE15880.pep: gold |
Preliminary Size: | 1137 |
Sequenced Size: | 1328 |
Gene | Date | Evidence |
---|---|---|
CG14044 | 2001-12-14 | Blastp of sequenced clone |
CG14044 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14044 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14044 | 2008-04-29 | Release 5.5 accounting |
CG14044 | 2008-08-15 | Release 5.9 accounting |
CG14044 | 2008-12-18 | 5.12 accounting |
1328 bp (1328 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071097
> RE15880.complete CATTCAGCGCTGGACAGGCGAACTGGAAAGGTCTAAGACGGAAGATGTCA TCGCCGGCAGAGCGGGCGAACTTCGTGCAGCACTTCGGACAGACAACCTG AGTGATGGGCTGTGGCTCCTCCATGGATACGCAGACGAATCCTGTCGTCA CGGAGGTCAGCTCGGAAATGCAACCTCGCCAGAATGGCGCCTCTGGAAAT GTGGTCGAGCAATATGTGCGCCTGGACGAGCAGATCAGCAAGCTGGAGGG CACATGTCCTGGTCCTCGAATGGCCACCGCCGAGGCCTGGGTGGAGCACA TTCAGAGCAAGCACGAGGCGATGCTGGGACTCGATGGCATGGGAGTGTCT CCTTTGCGCGAGAGGGAATGGGAAACCGAGGAGGCCCTGCCCATTCCAGC TTACACAATGGGGGGGCGGCAGGGCGACCCAATTGTGGCCAACACGCCCA CCAAGGACCTGGCCCAGCTTGCCTACAACCTGGGCGTAATTGGCGATGCC CGCAAGGCTTCCATGCACGAGGATTTCTTCGCCAACCTGAGCGAGTCCGC CATGTATTTGCTTAGCATTCGTTACTACGGCGAGATGTTGGAACACACTA AGGTGCGTCTAAAGACTCTGGCCGAGAGCTATGCAGAGCTGAACGAGCTG TACGTAAAGCAAGACGGGATTATAGCGTATATAAGCGGGGGAACGTACAT GACTCGGCTGGAGGAGAGCATTGATGAGCAGCTTGAGACGGCAAGAGATA CAAGGGATAAGCTGGGCAGCGCACTGGAGCAGTGGCGCATCTGTGGATTA CTACTTAGAGCAGCCGCGAATTCCTCGACGCAGGCATTAAAACAATGGCG ACAGCTTGGACGGATAATAGATCCCAAGCAAAAGCTTCAGTGGGCGTTGG ACTGTCGAAGTCTGTTACACGCCTCCACGATATCCCTAGAGGCGGCTCAG CTGGCTCTGCCGCACGTGGAACTCAAGTACATGAGTCATCGGCAAGTCCT AGCCGTCAAGCACTGCAACACCTACCTAATCACGGATATAGCAAACAAAG CGCGGTACGAGCACACCAGTCGGGTCTTCACCAGTTACGAATCAAACATG TCCAAAACCTGCACGTGGCTCTACGAAACCTTTAACAGCACGCTGCGCCC AGACTACGACAGGGCGGAGGAAACTGTATGCGGGCTGGCCAAGACGCTCC GGGATCATCGCGAGGAGGTCTTCAACACGGTGCGCAAGTGACATTAAACT TATTGCTCAATTATATGGGTATTTTGTACATTACTTTAATAAACAGTAGG CATAACATTAATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 4942446..4942848 | 466..868 | 2015 | 100 | Plus |
chr2L | 23010047 | chr2L | 4942111..4942380 | 198..467 | 1350 | 100 | Plus |
chr2L | 23010047 | chr2L | 4943147..4943403 | 1054..1310 | 1285 | 100 | Plus |
chr2L | 23010047 | chr2L | 4941848..4942044 | 1..197 | 985 | 100 | Plus |
chr2L | 23010047 | chr2L | 4942903..4943091 | 869..1057 | 945 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4943346..4943748 | 466..868 | 2015 | 100 | Plus |
2L | 23513712 | 2L | 4943011..4943280 | 198..467 | 1350 | 100 | Plus |
2L | 23513712 | 2L | 4944047..4944303 | 1054..1310 | 1285 | 100 | Plus |
2L | 23513712 | 2L | 4942748..4942944 | 1..197 | 985 | 100 | Plus |
2L | 23513712 | 2L | 4943803..4943991 | 869..1057 | 945 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4943346..4943748 | 466..868 | 2015 | 100 | Plus |
2L | 23513712 | 2L | 4943011..4943280 | 198..467 | 1350 | 100 | Plus |
2L | 23513712 | 2L | 4944047..4944303 | 1054..1310 | 1285 | 100 | Plus |
2L | 23513712 | 2L | 4942748..4942944 | 1..197 | 985 | 100 | Plus |
2L | 23513712 | 2L | 4943803..4943991 | 869..1057 | 945 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4941848..4942044 | 1..197 | 100 | -> | Plus |
chr2L | 4942111..4942380 | 198..467 | 100 | -> | Plus |
chr2L | 4942448..4942848 | 468..868 | 100 | -> | Plus |
chr2L | 4942903..4943088 | 869..1054 | 100 | -> | Plus |
chr2L | 4943148..4943405 | 1055..1312 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14044-RA | 1..1137 | 105..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14044-RA | 1..1137 | 105..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14044-RA | 1..1137 | 105..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14044-RA | 1..1137 | 105..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14044-RA | 1..1137 | 105..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14044-RA | 1..1312 | 1..1312 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14044-RA | 1..1312 | 1..1312 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14044-RA | 7..1318 | 1..1312 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14044-RA | 1..1312 | 1..1312 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14044-RA | 7..1318 | 1..1312 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4942748..4942944 | 1..197 | 100 | -> | Plus |
2L | 4943011..4943280 | 198..467 | 100 | -> | Plus |
2L | 4943348..4943748 | 468..868 | 100 | -> | Plus |
2L | 4943803..4943988 | 869..1054 | 100 | -> | Plus |
2L | 4944048..4944305 | 1055..1312 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4942748..4942944 | 1..197 | 100 | -> | Plus |
2L | 4943011..4943280 | 198..467 | 100 | -> | Plus |
2L | 4943348..4943748 | 468..868 | 100 | -> | Plus |
2L | 4943803..4943988 | 869..1054 | 100 | -> | Plus |
2L | 4944048..4944305 | 1055..1312 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4942748..4942944 | 1..197 | 100 | -> | Plus |
2L | 4943011..4943280 | 198..467 | 100 | -> | Plus |
2L | 4943348..4943748 | 468..868 | 100 | -> | Plus |
2L | 4943803..4943988 | 869..1054 | 100 | -> | Plus |
2L | 4944048..4944305 | 1055..1312 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4942748..4942944 | 1..197 | 100 | -> | Plus |
arm_2L | 4943011..4943280 | 198..467 | 100 | -> | Plus |
arm_2L | 4943348..4943748 | 468..868 | 100 | -> | Plus |
arm_2L | 4943803..4943988 | 869..1054 | 100 | -> | Plus |
arm_2L | 4944048..4944305 | 1055..1312 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4943011..4943280 | 198..467 | 100 | -> | Plus |
2L | 4943348..4943748 | 468..868 | 100 | -> | Plus |
2L | 4943803..4943988 | 869..1054 | 100 | -> | Plus |
2L | 4944048..4944305 | 1055..1312 | 99 | Plus | |
2L | 4942748..4942944 | 1..197 | 100 | -> | Plus |
Translation from 104 to 1240
> RE15880.pep MGCGSSMDTQTNPVVTEVSSEMQPRQNGASGNVVEQYVRLDEQISKLEGT CPGPRMATAEAWVEHIQSKHEAMLGLDGMGVSPLREREWETEEALPIPAY TMGGRQGDPIVANTPTKDLAQLAYNLGVIGDARKASMHEDFFANLSESAM YLLSIRYYGEMLEHTKVRLKTLAESYAELNELYVKQDGIIAYISGGTYMT RLEESIDEQLETARDTRDKLGSALEQWRICGLLLRAAANSSTQALKQWRQ LGRIIDPKQKLQWALDCRSLLHASTISLEAAQLALPHVELKYMSHRQVLA VKHCNTYLITDIANKARYEHTSRVFTSYESNMSKTCTWLYETFNSTLRPD YDRAEETVCGLAKTLRDHREEVFNTVRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23580-PA | 385 | GF23580-PA | 1..385 | 1..378 | 1730 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25030-PA | 377 | GG25030-PA | 1..377 | 1..378 | 1973 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13328-PA | 395 | GH13328-PA | 1..395 | 1..378 | 1460 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14044-PA | 378 | CG14044-PA | 1..378 | 1..378 | 1962 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17802-PA | 352 | GI17802-PA | 1..343 | 1..332 | 1327 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18643-PA | 379 | GL18643-PA | 1..379 | 1..378 | 1709 | 83.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12723-PA | 381 | GA12723-PA | 1..381 | 1..378 | 1714 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18503-PA | 378 | GM18503-PA | 1..378 | 1..378 | 1995 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17627-PA | 383 | GJ17627-PA | 1..383 | 1..378 | 1488 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24472-PA | 373 | GK24472-PA | 1..373 | 1..378 | 1565 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11263-PA | 377 | GE11263-PA | 1..377 | 1..378 | 1954 | 95.8 | Plus |
Translation from 104 to 1240
> RE15880.hyp MGCGSSMDTQTNPVVTEVSSEMQPRQNGASGNVVEQYVRLDEQISKLEGT CPGPRMATAEAWVEHIQSKHEAMLGLDGMGVSPLREREWETEEALPIPAY TMGGRQGDPIVANTPTKDLAQLAYNLGVIGDARKASMHEDFFANLSESAM YLLSIRYYGEMLEHTKVRLKTLAESYAELNELYVKQDGIIAYISGGTYMT RLEESIDEQLETARDTRDKLGSALEQWRICGLLLRAAANSSTQALKQWRQ LGRIIDPKQKLQWALDCRSLLHASTISLEAAQLALPHVELKYMSHRQVLA VKHCNTYLITDIANKARYEHTSRVFTSYESNMSKTCTWLYETFNSTLRPD YDRAEETVCGLAKTLRDHREEVFNTVRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14044-PA | 378 | CG14044-PA | 1..378 | 1..378 | 1962 | 100 | Plus |