BDGP Sequence Production Resources |
Search the DGRC for RE15974
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 159 |
Well: | 74 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13377-RA |
Protein status: | RE15974.pep: gold |
Preliminary Size: | 993 |
Sequenced Size: | 1614 |
Gene | Date | Evidence |
---|---|---|
CG13377 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13377 | 2002-04-09 | Blastp of sequenced clone |
CG13377 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13377 | 2008-04-29 | Release 5.5 accounting |
CG13377 | 2008-08-15 | Release 5.9 accounting |
CG13377 | 2008-12-18 | 5.12 accounting |
1614 bp (1614 high quality bases) assembled on 2002-04-09
GenBank Submission: AY095197
> RE15974.complete AGTCTTCAGTTCAAACTCAGTCAATAAAGTCGCAGTGCGGAAAAATATCG CAGACTCGAGAGTTGAAAACAACAAATAATAAGTAGCATAACTCTCTCTC TGTCGCACTCAATCAGGCCTGGGCCTGGCAGACTGTGTGTAAAATAAATA AATCAAAAAACAAAATTCAAGACATTATAGTGAATTTAAAGTGAATTATC AAGTATATATTCGCGTCGCGTTGGAAAATATACTTTTTTTTTTTTTTTTG TTTCTATAATAAAGTTTTGTCTAAGTGTAATTCTCTTAGCCAACCAGGTT TTAACTTTAATTAGACACATTCCAAAAGCGATGTCATAATGGAGGCAATG ACCATGCTGGTGTTGGGCTTCCAGTTGCTTGCGCTTTTTTCGATCGCCGG CGCGCTGCTTATCTACCTGATTTGTAAGGTGCGCGAGGATAGCGCATCTG CCAATGCGGATAGTCATCCCAGTCGGGTGGTCCTGATAACCAGTGCGGAT ACCGCATTGGGTCTTCAATTGTGCACCCATTTGGCTAACAAGGGTTATCG GGTTTTTGCTGGAATGAAAGAGGCCCAAGATTCGCTACCCGCCAAACTTC TTTGCGGTTGGATGAAGATCCGAGAGTACAGTGAGGAACCCATTGCAGGC ACAATTATTCCGATGAGATTGGATGTCACCCGAGAGGATGTGCTTCGCGA GGCCACCGTTATTATAGGCGCTAATCTAAATGCAGATGAGCGCGGTATTG CGGCCGTAATTAACACTAGTGGCAGTGTTTTCCGAGGCCAGGTTGAATCG CAGAATGTCCAGCAGTGGGAACACATGCTCAGAACCAACATCCTGGGCAC CTTACGTGTGGCCAAGGCCTTTGTGTGTTTTCTCCGTCCGACACGTGGAA GACTCCTTTACTTGGGAGGAGTAAGTGGAGGTGGAAATGCTCGAAACGAA GGTGATGGACTGGTTGCCTTTAACGCCTCACGCGTTGCCGTAGACAAGTG TGCCGAAGAGCTGCGCAAGGAGCTGCATCCCTATGGCGTCAGTGTGGTCG CTTTGGATACATGCGGCATGACGGCGGAGTCATTGTACAAGGCACCAGTG GCACAAACCATGTCCTTGGTCGTTGGGGCTCCTACGCAGTATACAGCGGA CGTGCTCAGTCCGGACGCTCTTCATGTGATCGAGCGGGCGTTGTGGGACT ATGTTCCGCAGCAGCGATATGCGCTTCTAAGTCATAACAAATACCAATTT GCGTTGCCATGTCGCTCCTCGCTGCGACTTCAGAGGCCGGTAGCTTCAAC AGTCGGCGAGAGCGCCAGTCAGTCGGTTTAAAATTTGTCTTCTTCCATTT CCTGTACATATGCTCCTGATCCTGATCCCATTTAGTATAACGCGTCTGAT CCTGCTCCTTTCCCTAATTTAATATTTTTACAATATATTTCGATTGATGT TTCTTTTTTCTGTTCTGAGGGCTTTTATAATATTTACTTTTTAATCGTTT TTGCTCACACTGCTAACGGTGTAATTGTTGAACGTTATATTTAATGTTAT CATACATAAAAAAATAAAGATAATATATGTGCTGTCTATATATGTCTGTC CAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 152918..153698 | 1107..327 | 3890 | 99.9 | Minus |
chrX | 22417052 | chrX | 152360..152853 | 1601..1108 | 2455 | 99.8 | Minus |
chrX | 22417052 | chrX | 157693..158020 | 328..1 | 1625 | 99.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 152360..152853 | 1108..1601 | 99 | <- | Minus |
chrX | 152918..153696 | 329..1107 | 99 | <- | Minus |
chrX | 157693..158020 | 1..328 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13377-RA | 1..993 | 339..1331 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13377-RA | 1..993 | 339..1331 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13377-RA | 1..993 | 339..1331 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13377-RA | 1..993 | 339..1331 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13377-RA | 1..993 | 339..1331 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13377-RA | 1..1601 | 1..1601 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13377-RA | 1..1601 | 1..1601 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13377-RA | 1..1601 | 1..1601 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13377-RA | 1..1601 | 1..1601 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13377-RA | 1..1601 | 1..1601 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 258335..258828 | 1108..1601 | 100 | <- | Minus |
X | 258893..259671 | 329..1107 | 100 | <- | Minus |
X | 263668..263995 | 1..328 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 258335..258828 | 1108..1601 | 100 | <- | Minus |
X | 258893..259671 | 329..1107 | 100 | <- | Minus |
X | 263668..263995 | 1..328 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 258335..258828 | 1108..1601 | 100 | <- | Minus |
X | 258893..259671 | 329..1107 | 100 | <- | Minus |
X | 263668..263995 | 1..328 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 152368..152861 | 1108..1601 | 100 | <- | Minus |
arm_X | 152926..153704 | 329..1107 | 100 | <- | Minus |
arm_X | 157701..158028 | 1..328 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 271766..272093 | 1..328 | 99 | Minus | |
X | 266433..266926 | 1108..1601 | 100 | <- | Minus |
X | 266991..267769 | 329..1107 | 100 | <- | Minus |
Translation from 338 to 1330
> RE15974.hyp MEAMTMLVLGFQLLALFSIAGALLIYLICKVREDSASANADSHPSRVVLI TSADTALGLQLCTHLANKGYRVFAGMKEAQDSLPAKLLCGWMKIREYSEE PIAGTIIPMRLDVTREDVLREATVIIGANLNADERGIAAVINTSGSVFRG QVESQNVQQWEHMLRTNILGTLRVAKAFVCFLRPTRGRLLYLGGVSGGGN ARNEGDGLVAFNASRVAVDKCAEELRKELHPYGVSVVALDTCGMTAESLY KAPVAQTMSLVVGAPTQYTADVLSPDALHVIERALWDYVPQQRYALLSHN KYQFALPCRSSLRLQRPVASTVGESASQSV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13377-PB | 330 | CG13377-PB | 1..330 | 1..330 | 1668 | 100 | Plus |
CG13377-PA | 330 | CG13377-PA | 1..330 | 1..330 | 1668 | 100 | Plus |
CG31549-PB | 257 | CG31549-PB | 3..194 | 42..251 | 161 | 25.2 | Plus |
CG31549-PA | 257 | CG31549-PA | 3..194 | 42..251 | 161 | 25.2 | Plus |
CG8888-PA | 388 | CG8888-PA | 69..273 | 11..236 | 155 | 28.4 | Plus |
Translation from 338 to 1330
> RE15974.pep MEAMTMLVLGFQLLALFSIAGALLIYLICKVREDSASANADSHPSRVVLI TSADTALGLQLCTHLANKGYRVFAGMKEAQDSLPAKLLCGWMKIREYSEE PIAGTIIPMRLDVTREDVLREATVIIGANLNADERGIAAVINTSGSVFRG QVESQNVQQWEHMLRTNILGTLRVAKAFVCFLRPTRGRLLYLGGVSGGGN ARNEGDGLVAFNASRVAVDKCAEELRKELHPYGVSVVALDTCGMTAESLY KAPVAQTMSLVVGAPTQYTADVLSPDALHVIERALWDYVPQQRYALLSHN KYQFALPCRSSLRLQRPVASTVGESASQSV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22179-PA | 320 | GF22179-PA | 1..320 | 1..330 | 1296 | 79.2 | Plus |
Dana\GF12646-PA | 388 | GF12646-PA | 69..273 | 11..236 | 159 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12768-PA | 330 | GG12768-PA | 1..330 | 1..330 | 1539 | 93.6 | Plus |
Dere\GG22610-PA | 388 | GG22610-PA | 69..273 | 11..236 | 163 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24722-PA | 325 | GH24722-PA | 1..325 | 1..330 | 1428 | 83.4 | Plus |
Dgri\GH21043-PA | 388 | GH21043-PA | 69..273 | 11..236 | 175 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13377-PB | 330 | CG13377-PB | 1..330 | 1..330 | 1668 | 100 | Plus |
CG13377-PA | 330 | CG13377-PA | 1..330 | 1..330 | 1668 | 100 | Plus |
CG31549-PB | 257 | CG31549-PB | 3..194 | 42..251 | 161 | 25.2 | Plus |
CG31549-PA | 257 | CG31549-PA | 3..194 | 42..251 | 161 | 25.2 | Plus |
CG8888-PA | 388 | CG8888-PA | 69..273 | 11..236 | 155 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21821-PA | 324 | GI21821-PA | 1..324 | 1..330 | 1370 | 81.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13353-PA | 330 | GL13353-PA | 1..330 | 1..330 | 1483 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12240-PA | 330 | GA12240-PA | 1..330 | 1..330 | 1483 | 85.5 | Plus |
Dpse\GA21392-PA | 388 | GA21392-PA | 69..273 | 11..236 | 159 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19048-PA | 330 | GM19048-PA | 1..330 | 1..330 | 1713 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16487-PA | 330 | GD16487-PA | 1..330 | 1..330 | 1723 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16995-PA | 324 | GJ16995-PA | 1..324 | 1..330 | 1436 | 84.2 | Plus |