Clone RE15974 Report

Search the DGRC for RE15974

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:159
Well:74
Vector:pFlc-1
Associated Gene/TranscriptCG13377-RA
Protein status:RE15974.pep: gold
Preliminary Size:993
Sequenced Size:1614

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13377 2002-01-01 Sim4 clustering to Release 2
CG13377 2002-04-09 Blastp of sequenced clone
CG13377 2003-01-01 Sim4 clustering to Release 3
CG13377 2008-04-29 Release 5.5 accounting
CG13377 2008-08-15 Release 5.9 accounting
CG13377 2008-12-18 5.12 accounting

Clone Sequence Records

RE15974.complete Sequence

1614 bp (1614 high quality bases) assembled on 2002-04-09

GenBank Submission: AY095197

> RE15974.complete
AGTCTTCAGTTCAAACTCAGTCAATAAAGTCGCAGTGCGGAAAAATATCG
CAGACTCGAGAGTTGAAAACAACAAATAATAAGTAGCATAACTCTCTCTC
TGTCGCACTCAATCAGGCCTGGGCCTGGCAGACTGTGTGTAAAATAAATA
AATCAAAAAACAAAATTCAAGACATTATAGTGAATTTAAAGTGAATTATC
AAGTATATATTCGCGTCGCGTTGGAAAATATACTTTTTTTTTTTTTTTTG
TTTCTATAATAAAGTTTTGTCTAAGTGTAATTCTCTTAGCCAACCAGGTT
TTAACTTTAATTAGACACATTCCAAAAGCGATGTCATAATGGAGGCAATG
ACCATGCTGGTGTTGGGCTTCCAGTTGCTTGCGCTTTTTTCGATCGCCGG
CGCGCTGCTTATCTACCTGATTTGTAAGGTGCGCGAGGATAGCGCATCTG
CCAATGCGGATAGTCATCCCAGTCGGGTGGTCCTGATAACCAGTGCGGAT
ACCGCATTGGGTCTTCAATTGTGCACCCATTTGGCTAACAAGGGTTATCG
GGTTTTTGCTGGAATGAAAGAGGCCCAAGATTCGCTACCCGCCAAACTTC
TTTGCGGTTGGATGAAGATCCGAGAGTACAGTGAGGAACCCATTGCAGGC
ACAATTATTCCGATGAGATTGGATGTCACCCGAGAGGATGTGCTTCGCGA
GGCCACCGTTATTATAGGCGCTAATCTAAATGCAGATGAGCGCGGTATTG
CGGCCGTAATTAACACTAGTGGCAGTGTTTTCCGAGGCCAGGTTGAATCG
CAGAATGTCCAGCAGTGGGAACACATGCTCAGAACCAACATCCTGGGCAC
CTTACGTGTGGCCAAGGCCTTTGTGTGTTTTCTCCGTCCGACACGTGGAA
GACTCCTTTACTTGGGAGGAGTAAGTGGAGGTGGAAATGCTCGAAACGAA
GGTGATGGACTGGTTGCCTTTAACGCCTCACGCGTTGCCGTAGACAAGTG
TGCCGAAGAGCTGCGCAAGGAGCTGCATCCCTATGGCGTCAGTGTGGTCG
CTTTGGATACATGCGGCATGACGGCGGAGTCATTGTACAAGGCACCAGTG
GCACAAACCATGTCCTTGGTCGTTGGGGCTCCTACGCAGTATACAGCGGA
CGTGCTCAGTCCGGACGCTCTTCATGTGATCGAGCGGGCGTTGTGGGACT
ATGTTCCGCAGCAGCGATATGCGCTTCTAAGTCATAACAAATACCAATTT
GCGTTGCCATGTCGCTCCTCGCTGCGACTTCAGAGGCCGGTAGCTTCAAC
AGTCGGCGAGAGCGCCAGTCAGTCGGTTTAAAATTTGTCTTCTTCCATTT
CCTGTACATATGCTCCTGATCCTGATCCCATTTAGTATAACGCGTCTGAT
CCTGCTCCTTTCCCTAATTTAATATTTTTACAATATATTTCGATTGATGT
TTCTTTTTTCTGTTCTGAGGGCTTTTATAATATTTACTTTTTAATCGTTT
TTGCTCACACTGCTAACGGTGTAATTGTTGAACGTTATATTTAATGTTAT
CATACATAAAAAAATAAAGATAATATATGTGCTGTCTATATATGTCTGTC
CAAAAAAAAAAAAA

RE15974.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13377-RA 1659 CG13377-RA 34..1636 1..1603 8000 99.9 Plus
cin-RA 2136 cin-RA 1999..2136 1603..1466 690 100 Minus
CG42376-RC 2464 CG42376-RC 2384..2464 1603..1523 405 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 152918..153698 1107..327 3890 99.9 Minus
chrX 22417052 chrX 152360..152853 1601..1108 2455 99.8 Minus
chrX 22417052 chrX 157693..158020 328..1 1625 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 258893..259673 1107..327 3905 100 Minus
X 23542271 X 258333..258828 1603..1108 2480 100 Minus
X 23542271 X 263668..263995 328..1 1625 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 266991..267771 1107..327 3905 100 Minus
X 23527363 X 266431..266926 1603..1108 2480 100 Minus
X 23527363 X 271766..272093 328..1 1625 99.6 Minus
Blast to na_te.dros performed on 2019-03-15 20:09:56 has no hits.

RE15974.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:10:50 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 152360..152853 1108..1601 99 <- Minus
chrX 152918..153696 329..1107 99 <- Minus
chrX 157693..158020 1..328 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:42 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 1..993 339..1331 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:10:34 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 1..993 339..1331 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:07:14 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 1..993 339..1331 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:11 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 1..993 339..1331 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:43 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 1..993 339..1331 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:44:55 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 1..1601 1..1601 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:10:34 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 1..1601 1..1601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:14 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 1..1601 1..1601 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:11 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 1..1601 1..1601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:43 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13377-RA 1..1601 1..1601 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:50 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
X 258335..258828 1108..1601 100 <- Minus
X 258893..259671 329..1107 100 <- Minus
X 263668..263995 1..328 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:50 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
X 258335..258828 1108..1601 100 <- Minus
X 258893..259671 329..1107 100 <- Minus
X 263668..263995 1..328 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:50 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
X 258335..258828 1108..1601 100 <- Minus
X 258893..259671 329..1107 100 <- Minus
X 263668..263995 1..328 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:14 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 152368..152861 1108..1601 100 <- Minus
arm_X 152926..153704 329..1107 100 <- Minus
arm_X 157701..158028 1..328 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:35 Download gff for RE15974.complete
Subject Subject Range Query Range Percent Splice Strand
X 271766..272093 1..328 99   Minus
X 266433..266926 1108..1601 100 <- Minus
X 266991..267769 329..1107 100 <- Minus

RE15974.hyp Sequence

Translation from 338 to 1330

> RE15974.hyp
MEAMTMLVLGFQLLALFSIAGALLIYLICKVREDSASANADSHPSRVVLI
TSADTALGLQLCTHLANKGYRVFAGMKEAQDSLPAKLLCGWMKIREYSEE
PIAGTIIPMRLDVTREDVLREATVIIGANLNADERGIAAVINTSGSVFRG
QVESQNVQQWEHMLRTNILGTLRVAKAFVCFLRPTRGRLLYLGGVSGGGN
ARNEGDGLVAFNASRVAVDKCAEELRKELHPYGVSVVALDTCGMTAESLY
KAPVAQTMSLVVGAPTQYTADVLSPDALHVIERALWDYVPQQRYALLSHN
KYQFALPCRSSLRLQRPVASTVGESASQSV*

RE15974.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13377-PB 330 CG13377-PB 1..330 1..330 1668 100 Plus
CG13377-PA 330 CG13377-PA 1..330 1..330 1668 100 Plus
CG31549-PB 257 CG31549-PB 3..194 42..251 161 25.2 Plus
CG31549-PA 257 CG31549-PA 3..194 42..251 161 25.2 Plus
CG8888-PA 388 CG8888-PA 69..273 11..236 155 28.4 Plus

RE15974.pep Sequence

Translation from 338 to 1330

> RE15974.pep
MEAMTMLVLGFQLLALFSIAGALLIYLICKVREDSASANADSHPSRVVLI
TSADTALGLQLCTHLANKGYRVFAGMKEAQDSLPAKLLCGWMKIREYSEE
PIAGTIIPMRLDVTREDVLREATVIIGANLNADERGIAAVINTSGSVFRG
QVESQNVQQWEHMLRTNILGTLRVAKAFVCFLRPTRGRLLYLGGVSGGGN
ARNEGDGLVAFNASRVAVDKCAEELRKELHPYGVSVVALDTCGMTAESLY
KAPVAQTMSLVVGAPTQYTADVLSPDALHVIERALWDYVPQQRYALLSHN
KYQFALPCRSSLRLQRPVASTVGESASQSV*

RE15974.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22179-PA 320 GF22179-PA 1..320 1..330 1296 79.2 Plus
Dana\GF12646-PA 388 GF12646-PA 69..273 11..236 159 28.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12768-PA 330 GG12768-PA 1..330 1..330 1539 93.6 Plus
Dere\GG22610-PA 388 GG22610-PA 69..273 11..236 163 28.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24722-PA 325 GH24722-PA 1..325 1..330 1428 83.4 Plus
Dgri\GH21043-PA 388 GH21043-PA 69..273 11..236 175 28.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13377-PB 330 CG13377-PB 1..330 1..330 1668 100 Plus
CG13377-PA 330 CG13377-PA 1..330 1..330 1668 100 Plus
CG31549-PB 257 CG31549-PB 3..194 42..251 161 25.2 Plus
CG31549-PA 257 CG31549-PA 3..194 42..251 161 25.2 Plus
CG8888-PA 388 CG8888-PA 69..273 11..236 155 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21821-PA 324 GI21821-PA 1..324 1..330 1370 81.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13353-PA 330 GL13353-PA 1..330 1..330 1483 85.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12240-PA 330 GA12240-PA 1..330 1..330 1483 85.5 Plus
Dpse\GA21392-PA 388 GA21392-PA 69..273 11..236 159 28.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19048-PA 330 GM19048-PA 1..330 1..330 1713 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16487-PA 330 GD16487-PA 1..330 1..330 1723 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16995-PA 324 GJ16995-PA 1..324 1..330 1436 84.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10120-PA 344 GK10120-PA 11..344 1..330 1487 85 Plus
Dwil\GK21980-PA 388 GK21980-PA 68..273 10..236 164 27.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16595-PA 330 GE16595-PA 1..330 1..330 1541 94.5 Plus
Dyak\GE13478-PA 388 GE13478-PA 69..273 11..236 162 28.4 Plus