BDGP Sequence Production Resources |
Search the DGRC for RE16047
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 160 |
Well: | 47 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG8097-RA |
Protein status: | RE16047.pep: gold |
Sequenced Size: | 1684 |
Gene | Date | Evidence |
---|---|---|
CG8097 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8097 | 2004-10-25 | Blastp of sequenced clone |
CG8097 | 2008-04-29 | Release 5.5 accounting |
CG8097 | 2008-08-15 | Release 5.9 accounting |
CG8097 | 2008-12-18 | 5.12 accounting |
1684 bp (1684 high quality bases) assembled on 2004-10-25
GenBank Submission: BT016022
> RE16047.complete ACCTTTACGAAAAGTGCGTCTGGCGTGAAGTGTTTGGTTTTCAGCAAATT AAGGATTTAAGTAGGCAAGCCTGGAAATAACTTTAATTATATTACTGACA TATCATCACTAGTTTTCATACTTTACAAGTGTTCGTTTATGTTTCTATAC AAGTGAAATTATTTTCAACAGAATTTAAATTGTTATATTTCGCGCTTTTC GGTAAAACCATTTATCGGCGAACAGAAGATTTGCTTTTGACGGCAGGCAG AAGATTTGCGTTTGACGGCAGGCAGAAGAAGTTGATTTTATTCAGTGAAA AATGGATTGTAATCCAAGGTTGCAGGTTGGCCAGCAATTATTCGAATTTT TTACCAAGCCGGAAAAGCCGGATGAGTCTGGTGGCGATGTAGCAGCTCCG TTGCTCTTGAAGAAATTCGGCAAGTTGATCCGTTACAACAACGATGATCT GACCGAGCAGGGTGACTTGACTTTGGCGGCCATCCCGCGTTACTGGCAAA AATATTTAAAAAGCCAGGGTCTGAAGCTGCGCATCGATGGCGACGAACTG CTCCCCAGCCCGGTGGACCGCCTGGAGTTGATGGAGCATTCACGCAAGTG GCGTTTCCCGCTCGCCGAAATCACTGTGCTGAACAAGGAACGCTACTCTC TGCGTTTCCAGCGCCATCCGATTATTGCACATGTGCTTAACTCTGTGCTC ACGCTGCGCGGCGATTACGGCCGTTCGGCAAATAACAACCAATCGCGCAC CATATGCTTGCAGTTGCAAGCCGTTGTCGGAGCCGTCGATGGCGGGCAGG ACTTGCGCCACTATCGCTTGCAGCAGCTATACAAGATACTGCTGCGCCTG GTTGACTACTCGTCTTGGCGCCTCGTGGAGCCGAATGACCGCCAGAAGGA CACCATCTGTGTGACTGTCGAGCTGGAGAAATGCTGCAACGGCAAGCAGC CCGTGGAACATGTGTGCCTCACATGCGGTCCTGTTTTGGAGCCGATAAAT AAGGGCGCCAGCTCATTGACTGTTGACGAGTACTTAAAGCTGCGCTGCCA GCACATGGAGCTGATGGCCACGCAGCGCTCCGGAATGTGTCCGGTACCAA TGAGTAGCCTTGATACGCTGACGAAGCGTCTTGCGGCCGCTGCCGTGATT GTGGATCTCTTTGTGGTGCGCCACTCCAGCGCCGTGAGTGTGGTGCGCAA TGGAGTTGGCATTTGCAAGGGCGCTTCTTACATCTTGTACAATTCAGCAC GTCTGGAGGCGCTGCTGCGCAAATTTAATTATGAGGTTAACAATTGTGCC TATGAGAAACTGCCACTGCTGGATGAGATCGATCTCAGCGTTCTAGAGGA TGATGTTGACTGGGAGTTGATTTATGGCTACCTCCTTACCTTTCCGGAGC TAATGGAGTCCATAATGGATCAATTGGACCAGGGTCATTGCGGTCTCCAT CTGCTTGTGCACTATGTTGAGAACCTGGCTGCCGCCTTCAGTCGCTTCTA TTATCATAAGAAGGTCCTTCTTCAGAAGCGCGATGAACTAATGCCGATCT TGTACGCCAGGATCTACCTGATCAAGGCGGTGAGACAGGTCCTGAATACG GCTCTGGCCGTCCTGGGCATAGAACCGGTGGACTACGTATAAAGATATGT TGAGCATATCTTCTATAAACAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15473048..15474086 | 1..1039 | 5195 | 100 | Plus |
chrX | 22417052 | chrX | 15474211..15474528 | 1039..1356 | 1590 | 100 | Plus |
chrX | 22417052 | chrX | 15474590..15474905 | 1355..1670 | 1580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15583161..15584199 | 1..1039 | 5195 | 100 | Plus |
X | 23542271 | X | 15584703..15585032 | 1355..1684 | 1635 | 99.7 | Plus |
X | 23542271 | X | 15584324..15584641 | 1039..1356 | 1590 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15591259..15592297 | 1..1039 | 5195 | 100 | Plus |
X | 23527363 | X | 15592801..15593130 | 1355..1684 | 1635 | 99.6 | Plus |
X | 23527363 | X | 15592422..15592739 | 1039..1356 | 1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15473048..15474085 | 1..1038 | 100 | -> | Plus |
chrX | 15474211..15474526 | 1039..1354 | 100 | -> | Plus |
chrX | 15474590..15474905 | 1355..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8097-RA | 1..1341 | 302..1642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8097-RA | 1..1341 | 302..1642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8097-RA | 1..1341 | 302..1642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8097-RA | 1..1341 | 302..1642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8097-RA | 1..1341 | 302..1642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8097-RA | 1..1670 | 1..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8097-RA | 1..1670 | 1..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8097-RA | 3..1672 | 1..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8097-RA | 1..1670 | 1..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8097-RA | 3..1672 | 1..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15583161..15584198 | 1..1038 | 100 | -> | Plus |
X | 15584324..15584639 | 1039..1354 | 100 | -> | Plus |
X | 15584703..15585018 | 1355..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15583161..15584198 | 1..1038 | 100 | -> | Plus |
X | 15584324..15584639 | 1039..1354 | 100 | -> | Plus |
X | 15584703..15585018 | 1355..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15583161..15584198 | 1..1038 | 100 | -> | Plus |
X | 15584324..15584639 | 1039..1354 | 100 | -> | Plus |
X | 15584703..15585018 | 1355..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15477194..15478231 | 1..1038 | 100 | -> | Plus |
arm_X | 15478357..15478672 | 1039..1354 | 100 | -> | Plus |
arm_X | 15478736..15479051 | 1355..1670 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15591259..15592296 | 1..1038 | 100 | -> | Plus |
X | 15592422..15592737 | 1039..1354 | 100 | -> | Plus |
X | 15592801..15593116 | 1355..1670 | 100 | Plus |
Translation from 301 to 1641
> RE16047.pep MDCNPRLQVGQQLFEFFTKPEKPDESGGDVAAPLLLKKFGKLIRYNNDDL TEQGDLTLAAIPRYWQKYLKSQGLKLRIDGDELLPSPVDRLELMEHSRKW RFPLAEITVLNKERYSLRFQRHPIIAHVLNSVLTLRGDYGRSANNNQSRT ICLQLQAVVGAVDGGQDLRHYRLQQLYKILLRLVDYSSWRLVEPNDRQKD TICVTVELEKCCNGKQPVEHVCLTCGPVLEPINKGASSLTVDEYLKLRCQ HMELMATQRSGMCPVPMSSLDTLTKRLAAAAVIVDLFVVRHSSAVSVVRN GVGICKGASYILYNSARLEALLRKFNYEVNNCAYEKLPLLDEIDLSVLED DVDWELIYGYLLTFPELMESIMDQLDQGHCGLHLLVHYVENLAAAFSRFY YHKKVLLQKRDELMPILYARIYLIKAVRQVLNTALAVLGIEPVDYV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21913-PA | 442 | GF21913-PA | 1..442 | 1..446 | 1145 | 50.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17890-PA | 446 | GG17890-PA | 1..446 | 1..446 | 1741 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12874-PA | 441 | GH12874-PA | 1..441 | 1..446 | 1069 | 48 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8097-PB | 446 | CG8097-PB | 1..446 | 1..446 | 2319 | 100 | Plus |
CG8097-PA | 446 | CG8097-PA | 1..446 | 1..446 | 2319 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14973-PA | 451 | GI14973-PA | 1..451 | 1..446 | 1014 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16554-PA | 447 | GL16554-PA | 7..447 | 5..446 | 1082 | 51.8 | Plus |
Dper\GL16553-PA | 447 | GL16553-PA | 7..447 | 5..446 | 1081 | 52 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23095-PA | 447 | GA23095-PA | 7..447 | 5..446 | 1082 | 51.8 | Plus |
Dpse\GA23097-PA | 447 | GA23097-PA | 7..447 | 5..446 | 1082 | 51.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22556-PA | 446 | GM22556-PA | 1..446 | 1..446 | 2013 | 84.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17222-PA | 246 | GD17222-PA | 1..246 | 1..246 | 1073 | 80.9 | Plus |
Dsim\GD17218-PA | 171 | GD17218-PA | 1..171 | 252..422 | 790 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18934-PA | 450 | GJ18934-PA | 1..450 | 1..446 | 1079 | 49.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25318-PA | 448 | GK25318-PA | 4..448 | 4..446 | 915 | 43.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17197-PA | 446 | GE17197-PA | 1..446 | 1..446 | 1685 | 71.3 | Plus |
Translation from 301 to 1641
> RE16047.hyp MDCNPRLQVGQQLFEFFTKPEKPDESGGDVAAPLLLKKFGKLIRYNNDDL TEQGDLTLAAIPRYWQKYLKSQGLKLRIDGDELLPSPVDRLELMEHSRKW RFPLAEITVLNKERYSLRFQRHPIIAHVLNSVLTLRGDYGRSANNNQSRT ICLQLQAVVGAVDGGQDLRHYRLQQLYKILLRLVDYSSWRLVEPNDRQKD TICVTVELEKCCNGKQPVEHVCLTCGPVLEPINKGASSLTVDEYLKLRCQ HMELMATQRSGMCPVPMSSLDTLTKRLAAAAVIVDLFVVRHSSAVSVVRN GVGICKGASYILYNSARLEALLRKFNYEVNNCAYEKLPLLDEIDLSVLED DVDWELIYGYLLTFPELMESIMDQLDQGHCGLHLLVHYVENLAAAFSRFY YHKKVLLQKRDELMPILYARIYLIKAVRQVLNTALAVLGIEPVDYV*