Clone RE16047 Report

Search the DGRC for RE16047

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:160
Well:47
Vector:pFlc-1
Associated Gene/TranscriptCG8097-RA
Protein status:RE16047.pep: gold
Sequenced Size:1684

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8097 2003-01-01 Sim4 clustering to Release 3
CG8097 2004-10-25 Blastp of sequenced clone
CG8097 2008-04-29 Release 5.5 accounting
CG8097 2008-08-15 Release 5.9 accounting
CG8097 2008-12-18 5.12 accounting

Clone Sequence Records

RE16047.complete Sequence

1684 bp (1684 high quality bases) assembled on 2004-10-25

GenBank Submission: BT016022

> RE16047.complete
ACCTTTACGAAAAGTGCGTCTGGCGTGAAGTGTTTGGTTTTCAGCAAATT
AAGGATTTAAGTAGGCAAGCCTGGAAATAACTTTAATTATATTACTGACA
TATCATCACTAGTTTTCATACTTTACAAGTGTTCGTTTATGTTTCTATAC
AAGTGAAATTATTTTCAACAGAATTTAAATTGTTATATTTCGCGCTTTTC
GGTAAAACCATTTATCGGCGAACAGAAGATTTGCTTTTGACGGCAGGCAG
AAGATTTGCGTTTGACGGCAGGCAGAAGAAGTTGATTTTATTCAGTGAAA
AATGGATTGTAATCCAAGGTTGCAGGTTGGCCAGCAATTATTCGAATTTT
TTACCAAGCCGGAAAAGCCGGATGAGTCTGGTGGCGATGTAGCAGCTCCG
TTGCTCTTGAAGAAATTCGGCAAGTTGATCCGTTACAACAACGATGATCT
GACCGAGCAGGGTGACTTGACTTTGGCGGCCATCCCGCGTTACTGGCAAA
AATATTTAAAAAGCCAGGGTCTGAAGCTGCGCATCGATGGCGACGAACTG
CTCCCCAGCCCGGTGGACCGCCTGGAGTTGATGGAGCATTCACGCAAGTG
GCGTTTCCCGCTCGCCGAAATCACTGTGCTGAACAAGGAACGCTACTCTC
TGCGTTTCCAGCGCCATCCGATTATTGCACATGTGCTTAACTCTGTGCTC
ACGCTGCGCGGCGATTACGGCCGTTCGGCAAATAACAACCAATCGCGCAC
CATATGCTTGCAGTTGCAAGCCGTTGTCGGAGCCGTCGATGGCGGGCAGG
ACTTGCGCCACTATCGCTTGCAGCAGCTATACAAGATACTGCTGCGCCTG
GTTGACTACTCGTCTTGGCGCCTCGTGGAGCCGAATGACCGCCAGAAGGA
CACCATCTGTGTGACTGTCGAGCTGGAGAAATGCTGCAACGGCAAGCAGC
CCGTGGAACATGTGTGCCTCACATGCGGTCCTGTTTTGGAGCCGATAAAT
AAGGGCGCCAGCTCATTGACTGTTGACGAGTACTTAAAGCTGCGCTGCCA
GCACATGGAGCTGATGGCCACGCAGCGCTCCGGAATGTGTCCGGTACCAA
TGAGTAGCCTTGATACGCTGACGAAGCGTCTTGCGGCCGCTGCCGTGATT
GTGGATCTCTTTGTGGTGCGCCACTCCAGCGCCGTGAGTGTGGTGCGCAA
TGGAGTTGGCATTTGCAAGGGCGCTTCTTACATCTTGTACAATTCAGCAC
GTCTGGAGGCGCTGCTGCGCAAATTTAATTATGAGGTTAACAATTGTGCC
TATGAGAAACTGCCACTGCTGGATGAGATCGATCTCAGCGTTCTAGAGGA
TGATGTTGACTGGGAGTTGATTTATGGCTACCTCCTTACCTTTCCGGAGC
TAATGGAGTCCATAATGGATCAATTGGACCAGGGTCATTGCGGTCTCCAT
CTGCTTGTGCACTATGTTGAGAACCTGGCTGCCGCCTTCAGTCGCTTCTA
TTATCATAAGAAGGTCCTTCTTCAGAAGCGCGATGAACTAATGCCGATCT
TGTACGCCAGGATCTACCTGATCAAGGCGGTGAGACAGGTCCTGAATACG
GCTCTGGCCGTCCTGGGCATAGAACCGGTGGACTACGTATAAAGATATGT
TGAGCATATCTTCTATAAACAAAAAAAAAAAAAA

RE16047.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8097-RA 1920 CG8097-RA 15..1698 1..1684 8405 99.9 Plus
CG8097.a 2220 CG8097.a 15..1698 1..1684 8405 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15473048..15474086 1..1039 5195 100 Plus
chrX 22417052 chrX 15474211..15474528 1039..1356 1590 100 Plus
chrX 22417052 chrX 15474590..15474905 1355..1670 1580 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15583161..15584199 1..1039 5195 100 Plus
X 23542271 X 15584703..15585032 1355..1684 1635 99.7 Plus
X 23542271 X 15584324..15584641 1039..1356 1590 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15591259..15592297 1..1039 5195 100 Plus
X 23527363 X 15592801..15593130 1355..1684 1635 99.6 Plus
X 23527363 X 15592422..15592739 1039..1356 1590 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:09:58 has no hits.

RE16047.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:10:52 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15473048..15474085 1..1038 100 -> Plus
chrX 15474211..15474526 1039..1354 100 -> Plus
chrX 15474590..15474905 1355..1670 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:45 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 1..1341 302..1642 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:29:03 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 1..1341 302..1642 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:07:15 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 1..1341 302..1642 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:13:01 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 1..1341 302..1642 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:46 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 1..1341 302..1642 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:32:49 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 1..1670 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:29:03 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 1..1670 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:15 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 3..1672 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:13:01 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 1..1670 1..1670 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:46 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
CG8097-RA 3..1672 1..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:52 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
X 15583161..15584198 1..1038 100 -> Plus
X 15584324..15584639 1039..1354 100 -> Plus
X 15584703..15585018 1355..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:52 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
X 15583161..15584198 1..1038 100 -> Plus
X 15584324..15584639 1039..1354 100 -> Plus
X 15584703..15585018 1355..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:10:52 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
X 15583161..15584198 1..1038 100 -> Plus
X 15584324..15584639 1039..1354 100 -> Plus
X 15584703..15585018 1355..1670 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:15 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15477194..15478231 1..1038 100 -> Plus
arm_X 15478357..15478672 1039..1354 100 -> Plus
arm_X 15478736..15479051 1355..1670 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:49:39 Download gff for RE16047.complete
Subject Subject Range Query Range Percent Splice Strand
X 15591259..15592296 1..1038 100 -> Plus
X 15592422..15592737 1039..1354 100 -> Plus
X 15592801..15593116 1355..1670 100   Plus

RE16047.pep Sequence

Translation from 301 to 1641

> RE16047.pep
MDCNPRLQVGQQLFEFFTKPEKPDESGGDVAAPLLLKKFGKLIRYNNDDL
TEQGDLTLAAIPRYWQKYLKSQGLKLRIDGDELLPSPVDRLELMEHSRKW
RFPLAEITVLNKERYSLRFQRHPIIAHVLNSVLTLRGDYGRSANNNQSRT
ICLQLQAVVGAVDGGQDLRHYRLQQLYKILLRLVDYSSWRLVEPNDRQKD
TICVTVELEKCCNGKQPVEHVCLTCGPVLEPINKGASSLTVDEYLKLRCQ
HMELMATQRSGMCPVPMSSLDTLTKRLAAAAVIVDLFVVRHSSAVSVVRN
GVGICKGASYILYNSARLEALLRKFNYEVNNCAYEKLPLLDEIDLSVLED
DVDWELIYGYLLTFPELMESIMDQLDQGHCGLHLLVHYVENLAAAFSRFY
YHKKVLLQKRDELMPILYARIYLIKAVRQVLNTALAVLGIEPVDYV*

RE16047.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21913-PA 442 GF21913-PA 1..442 1..446 1145 50.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17890-PA 446 GG17890-PA 1..446 1..446 1741 74.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12874-PA 441 GH12874-PA 1..441 1..446 1069 48 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8097-PB 446 CG8097-PB 1..446 1..446 2319 100 Plus
CG8097-PA 446 CG8097-PA 1..446 1..446 2319 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14973-PA 451 GI14973-PA 1..451 1..446 1014 47.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16554-PA 447 GL16554-PA 7..447 5..446 1082 51.8 Plus
Dper\GL16553-PA 447 GL16553-PA 7..447 5..446 1081 52 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23095-PA 447 GA23095-PA 7..447 5..446 1082 51.8 Plus
Dpse\GA23097-PA 447 GA23097-PA 7..447 5..446 1082 51.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22556-PA 446 GM22556-PA 1..446 1..446 2013 84.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17222-PA 246 GD17222-PA 1..246 1..246 1073 80.9 Plus
Dsim\GD17218-PA 171 GD17218-PA 1..171 252..422 790 86.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18934-PA 450 GJ18934-PA 1..450 1..446 1079 49.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25318-PA 448 GK25318-PA 4..448 4..446 915 43.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17197-PA 446 GE17197-PA 1..446 1..446 1685 71.3 Plus

RE16047.hyp Sequence

Translation from 301 to 1641

> RE16047.hyp
MDCNPRLQVGQQLFEFFTKPEKPDESGGDVAAPLLLKKFGKLIRYNNDDL
TEQGDLTLAAIPRYWQKYLKSQGLKLRIDGDELLPSPVDRLELMEHSRKW
RFPLAEITVLNKERYSLRFQRHPIIAHVLNSVLTLRGDYGRSANNNQSRT
ICLQLQAVVGAVDGGQDLRHYRLQQLYKILLRLVDYSSWRLVEPNDRQKD
TICVTVELEKCCNGKQPVEHVCLTCGPVLEPINKGASSLTVDEYLKLRCQ
HMELMATQRSGMCPVPMSSLDTLTKRLAAAAVIVDLFVVRHSSAVSVVRN
GVGICKGASYILYNSARLEALLRKFNYEVNNCAYEKLPLLDEIDLSVLED
DVDWELIYGYLLTFPELMESIMDQLDQGHCGLHLLVHYVENLAAAFSRFY
YHKKVLLQKRDELMPILYARIYLIKAVRQVLNTALAVLGIEPVDYV*

RE16047.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8097-PB 446 CG8097-PB 1..446 1..446 2319 100 Plus
CG8097-PA 446 CG8097-PA 1..446 1..446 2319 100 Plus