BDGP Sequence Production Resources |
Search the DGRC for RE16061
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 160 |
Well: | 61 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12112-RA |
Protein status: | RE16061.pep: gold |
Sequenced Size: | 1097 |
Gene | Date | Evidence |
---|---|---|
CG12112 | 2011-05-19 | Manual selection by Charles Yu |
1097 bp assembled on 2011-09-14
GenBank Submission: BT128891.1
> RE16061.complete ATTCGTCGCCTAGCGAAGGCAATGATGAAACAGCGAGGAATTCCATTTGG AGCTTAACTGTGTAGCGAAGCGAATCGCTTCCATTAGGGACTTTCCTCAA TTCATAAACTAAATATACATATGTATTCACTTTAATGCTAAAAATTAACG AAGCAATGCCTGAAATCAAGAGACTTTGCCTCGCCACCGAGAATAGTCAT ATCGCAGCCAATGCCATGCTGCTAACAAAGATAGATGAACTCAATTCCCA AGTCCTGTCGCAGCGCGCAGAAATCGAAAACTTGACGAGGGCGGTTAAGA CACTTACGGAATTCGTTAAGCAGTCGATGAAAACGACCAAGCCGAAGGCG AAGGGAAATCCGGACGATGATTTTCCAATTATGTATGAGGAGGATCTGGT CGAAGTGAATCACAAGATAAGCCAGGACTCCAGGGGGATCTATACGAATT CCATGCGGAAATTCCTGCGCCAGGGAAGATTAAGCCGCACCATAAGACTC ATTTTCTCCGAGGACATCCTTCTGAACTACAATATTGATGGGAATCAGAA AAAGAAAAGACTAAAAGATCACGAACATCTGTTTCGTTCGCTTATGAACG CCATCGGTCAGGTGGAACCGACGCTACCCTCGGAAAAAGTCTTATTCAAA GCCATGAGATGCGTTAAGAATTGCGCAGCCAAAAAGAAGGGCAAGGTAGA TGATGACCCCTTGTCCGTTTTGAGCGTGGAGAAATCATAACTGTGCCCAT GTGAGATGACATAGTAGAAACAAGGATTTAAATATAAGTAATGATTTACG GGCGAATCAATCCGAATTGAGGATGAATACCCAAATAGTGGTTGATGGAT CATCATCACTTTGTTGAGAAGTTATCACTTCATGGAGAAGAGCGAGAGCA AAACAAAAGACGAAAAGAAAACATCGATTTTTCACTATACTATCGATGTT TCACGCCTTCAAAGTGAAATGTCCAAAAAATATGCCTCGTTTTCTTTATA TGATTACTAAATGACACATTTTTTTAAAATAATATAATTATTAAATGCCT GGTGATATTAGCATTATCACTCTTGTGAAAGCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 8450598..8451097 | 1082..598 | 2240 | 97 | Minus |
chrX | 22417052 | chrX | 8451655..8451891 | 237..1 | 1185 | 100 | Minus |
chrX | 22417052 | chrX | 8451387..8451593 | 443..237 | 1035 | 100 | Minus |
chrX | 22417052 | chrX | 8451160..8451313 | 597..444 | 770 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 8558877..8559363 | 1084..598 | 2435 | 100 | Minus |
X | 23542271 | X | 8559921..8560157 | 237..1 | 1185 | 100 | Minus |
X | 23542271 | X | 8559653..8559859 | 443..237 | 1035 | 100 | Minus |
X | 23542271 | X | 8559426..8559579 | 597..444 | 770 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 8566975..8567461 | 1084..598 | 2435 | 100 | Minus |
X | 23527363 | X | 8568019..8568255 | 237..1 | 1185 | 100 | Minus |
X | 23527363 | X | 8567751..8567957 | 443..237 | 1035 | 100 | Minus |
X | 23527363 | X | 8567524..8567677 | 597..444 | 770 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 8450598..8451097 | 598..1082 | 91 | <- | Minus |
chrX | 8451160..8451313 | 444..597 | 100 | <- | Minus |
chrX | 8451387..8451592 | 238..443 | 100 | <- | Minus |
chrX | 8451655..8451891 | 1..237 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12112-RA | 1..606 | 135..740 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12112-RA | 1..606 | 135..740 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12112-RA | 1..606 | 135..740 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12112-RA | 36..1117 | 1..1082 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12112-RA | 36..1117 | 1..1082 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12112-RA | 36..1117 | 1..1082 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8558879..8559363 | 598..1082 | 100 | <- | Minus |
X | 8559426..8559579 | 444..597 | 100 | <- | Minus |
X | 8559653..8559858 | 238..443 | 100 | <- | Minus |
X | 8559921..8560157 | 1..237 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8558879..8559363 | 598..1082 | 100 | <- | Minus |
X | 8559426..8559579 | 444..597 | 100 | <- | Minus |
X | 8559653..8559858 | 238..443 | 100 | <- | Minus |
X | 8559921..8560157 | 1..237 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8558879..8559363 | 598..1082 | 100 | <- | Minus |
X | 8559426..8559579 | 444..597 | 100 | <- | Minus |
X | 8559653..8559858 | 238..443 | 100 | <- | Minus |
X | 8559921..8560157 | 1..237 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 8453459..8453612 | 444..597 | 100 | <- | Minus |
arm_X | 8453954..8454190 | 1..237 | 100 | Minus | |
arm_X | 8453686..8453891 | 238..443 | 100 | <- | Minus |
arm_X | 8452912..8453396 | 598..1082 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8566977..8567461 | 598..1082 | 100 | <- | Minus |
X | 8567524..8567677 | 444..597 | 100 | <- | Minus |
X | 8567751..8567956 | 238..443 | 100 | <- | Minus |
X | 8568019..8568255 | 1..237 | 100 | Minus |
Translation from 134 to 739
> RE16061.hyp MLKINEAMPEIKRLCLATENSHIAANAMLLTKIDELNSQVLSQRAEIENL TRAVKTLTEFVKQSMKTTKPKAKGNPDDDFPIMYEEDLVEVNHKISQDSR GIYTNSMRKFLRQGRLSRTIRLIFSEDILLNYNIDGNQKKKRLKDHEHLF RSLMNAIGQVEPTLPSEKVLFKAMRCVKNCAAKKKGKVDDDPLSVLSVEK S*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12112-PA | 201 | CG12112-PA | 1..201 | 1..201 | 1014 | 100 | Plus |
CG12112-PB | 196 | CG12112-PB | 1..196 | 1..201 | 974 | 97.5 | Plus |
CG42854-PA | 160 | CG42854-PA | 2..158 | 35..187 | 199 | 34 | Plus |
Translation from 134 to 739
> RE16061.pep MLKINEAMPEIKRLCLATENSHIAANAMLLTKIDELNSQVLSQRAEIENL TRAVKTLTEFVKQSMKTTKPKAKGNPDDDFPIMYEEDLVEVNHKISQDSR GIYTNSMRKFLRQGRLSRTIRLIFSEDILLNYNIDGNQKKKRLKDHEHLF RSLMNAIGQVEPTLPSEKVLFKAMRCVKNCAAKKKGKVDDDPLSVLSVEK S*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20044-PA | 97 | GF20044-PA | 3..81 | 106..184 | 164 | 41.8 | Plus |
Dana\GF13858-PA | 153 | GF13858-PA | 17..144 | 33..161 | 136 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19040-PA | 204 | GG19040-PA | 1..198 | 1..199 | 905 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12112-PA | 201 | CG12112-PA | 1..201 | 1..201 | 1014 | 100 | Plus |
CG12112-PB | 196 | CG12112-PB | 1..196 | 1..201 | 974 | 97.5 | Plus |
CG42854-PA | 160 | CG42854-PA | 2..158 | 35..187 | 199 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15191-PA | 181 | GL15191-PA | 1..171 | 23..187 | 159 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22902-PA | 181 | GA22902-PA | 1..171 | 23..187 | 149 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21246-PA | 108 | GM21246-PA | 6..101 | 104..199 | 480 | 94.8 | Plus |
Dsec\GM21236-PA | 78 | GM21236-PA | 1..74 | 1..74 | 307 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15687-PA | 146 | GD15687-PA | 40..140 | 78..176 | 144 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12373-PA | 178 | GK12373-PA | 10..170 | 24..187 | 207 | 32.7 | Plus |
Dwil\GK16074-PA | 177 | GK16074-PA | 10..162 | 24..179 | 202 | 33.1 | Plus |
Dwil\GK12318-PA | 182 | GK12318-PA | 47..177 | 32..187 | 149 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17445-PA | 206 | GE17445-PA | 1..199 | 1..199 | 903 | 83.9 | Plus |
Dyak\GE12634-PA | 266 | GE12634-PA | 101..249 | 41..176 | 168 | 34.9 | Plus |
Dyak\GE14977-PA | 236 | GE14977-PA | 38..188 | 21..155 | 151 | 32.5 | Plus |