Clone RE16061 Report

Search the DGRC for RE16061

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:160
Well:61
Vector:pFlc-1
Associated Gene/TranscriptCG12112-RA
Protein status:RE16061.pep: gold
Sequenced Size:1097

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12112 2011-05-19 Manual selection by Charles Yu

Clone Sequence Records

RE16061.complete Sequence

1097 bp assembled on 2011-09-14

GenBank Submission: BT128891.1

> RE16061.complete
ATTCGTCGCCTAGCGAAGGCAATGATGAAACAGCGAGGAATTCCATTTGG
AGCTTAACTGTGTAGCGAAGCGAATCGCTTCCATTAGGGACTTTCCTCAA
TTCATAAACTAAATATACATATGTATTCACTTTAATGCTAAAAATTAACG
AAGCAATGCCTGAAATCAAGAGACTTTGCCTCGCCACCGAGAATAGTCAT
ATCGCAGCCAATGCCATGCTGCTAACAAAGATAGATGAACTCAATTCCCA
AGTCCTGTCGCAGCGCGCAGAAATCGAAAACTTGACGAGGGCGGTTAAGA
CACTTACGGAATTCGTTAAGCAGTCGATGAAAACGACCAAGCCGAAGGCG
AAGGGAAATCCGGACGATGATTTTCCAATTATGTATGAGGAGGATCTGGT
CGAAGTGAATCACAAGATAAGCCAGGACTCCAGGGGGATCTATACGAATT
CCATGCGGAAATTCCTGCGCCAGGGAAGATTAAGCCGCACCATAAGACTC
ATTTTCTCCGAGGACATCCTTCTGAACTACAATATTGATGGGAATCAGAA
AAAGAAAAGACTAAAAGATCACGAACATCTGTTTCGTTCGCTTATGAACG
CCATCGGTCAGGTGGAACCGACGCTACCCTCGGAAAAAGTCTTATTCAAA
GCCATGAGATGCGTTAAGAATTGCGCAGCCAAAAAGAAGGGCAAGGTAGA
TGATGACCCCTTGTCCGTTTTGAGCGTGGAGAAATCATAACTGTGCCCAT
GTGAGATGACATAGTAGAAACAAGGATTTAAATATAAGTAATGATTTACG
GGCGAATCAATCCGAATTGAGGATGAATACCCAAATAGTGGTTGATGGAT
CATCATCACTTTGTTGAGAAGTTATCACTTCATGGAGAAGAGCGAGAGCA
AAACAAAAGACGAAAAGAAAACATCGATTTTTCACTATACTATCGATGTT
TCACGCCTTCAAAGTGAAATGTCCAAAAAATATGCCTCGTTTTCTTTATA
TGATTACTAAATGACACATTTTTTTAAAATAATATAATTATTAAATGCCT
GGTGATATTAGCATTATCACTCTTGTGAAAGCAAAAAAAAAAAAAAA

RE16061.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8450598..8451097 1082..598 2240 97 Minus
chrX 22417052 chrX 8451655..8451891 237..1 1185 100 Minus
chrX 22417052 chrX 8451387..8451593 443..237 1035 100 Minus
chrX 22417052 chrX 8451160..8451313 597..444 770 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8558877..8559363 1084..598 2435 100 Minus
X 23542271 X 8559921..8560157 237..1 1185 100 Minus
X 23542271 X 8559653..8559859 443..237 1035 100 Minus
X 23542271 X 8559426..8559579 597..444 770 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8566975..8567461 1084..598 2435 100 Minus
X 23527363 X 8568019..8568255 237..1 1185 100 Minus
X 23527363 X 8567751..8567957 443..237 1035 100 Minus
X 23527363 X 8567524..8567677 597..444 770 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:01:18 has no hits.

RE16061.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:02:22 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8450598..8451097 598..1082 91 <- Minus
chrX 8451160..8451313 444..597 100 <- Minus
chrX 8451387..8451592 238..443 100 <- Minus
chrX 8451655..8451891 1..237 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-14 16:57:22 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
CG12112-RA 1..606 135..740 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:33:27 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
CG12112-RA 1..606 135..740 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:19:39 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
CG12112-RA 1..606 135..740 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 16:57:22 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
CG12112-RA 36..1117 1..1082 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:33:27 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
CG12112-RA 36..1117 1..1082 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:39 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
CG12112-RA 36..1117 1..1082 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:22 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
X 8558879..8559363 598..1082 100 <- Minus
X 8559426..8559579 444..597 100 <- Minus
X 8559653..8559858 238..443 100 <- Minus
X 8559921..8560157 1..237 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:22 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
X 8558879..8559363 598..1082 100 <- Minus
X 8559426..8559579 444..597 100 <- Minus
X 8559653..8559858 238..443 100 <- Minus
X 8559921..8560157 1..237 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:22 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
X 8558879..8559363 598..1082 100 <- Minus
X 8559426..8559579 444..597 100 <- Minus
X 8559653..8559858 238..443 100 <- Minus
X 8559921..8560157 1..237 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:33:27 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8453459..8453612 444..597 100 <- Minus
arm_X 8453954..8454190 1..237 100   Minus
arm_X 8453686..8453891 238..443 100 <- Minus
arm_X 8452912..8453396 598..1082 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:48:25 Download gff for RE16061.complete
Subject Subject Range Query Range Percent Splice Strand
X 8566977..8567461 598..1082 100 <- Minus
X 8567524..8567677 444..597 100 <- Minus
X 8567751..8567956 238..443 100 <- Minus
X 8568019..8568255 1..237 100   Minus

RE16061.hyp Sequence

Translation from 134 to 739

> RE16061.hyp
MLKINEAMPEIKRLCLATENSHIAANAMLLTKIDELNSQVLSQRAEIENL
TRAVKTLTEFVKQSMKTTKPKAKGNPDDDFPIMYEEDLVEVNHKISQDSR
GIYTNSMRKFLRQGRLSRTIRLIFSEDILLNYNIDGNQKKKRLKDHEHLF
RSLMNAIGQVEPTLPSEKVLFKAMRCVKNCAAKKKGKVDDDPLSVLSVEK
S*

RE16061.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12112-PA 201 CG12112-PA 1..201 1..201 1014 100 Plus
CG12112-PB 196 CG12112-PB 1..196 1..201 974 97.5 Plus
CG42854-PA 160 CG42854-PA 2..158 35..187 199 34 Plus

RE16061.pep Sequence

Translation from 134 to 739

> RE16061.pep
MLKINEAMPEIKRLCLATENSHIAANAMLLTKIDELNSQVLSQRAEIENL
TRAVKTLTEFVKQSMKTTKPKAKGNPDDDFPIMYEEDLVEVNHKISQDSR
GIYTNSMRKFLRQGRLSRTIRLIFSEDILLNYNIDGNQKKKRLKDHEHLF
RSLMNAIGQVEPTLPSEKVLFKAMRCVKNCAAKKKGKVDDDPLSVLSVEK
S*

RE16061.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20044-PA 97 GF20044-PA 3..81 106..184 164 41.8 Plus
Dana\GF13858-PA 153 GF13858-PA 17..144 33..161 136 27.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19040-PA 204 GG19040-PA 1..198 1..199 905 85.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12112-PA 201 CG12112-PA 1..201 1..201 1014 100 Plus
CG12112-PB 196 CG12112-PB 1..196 1..201 974 97.5 Plus
CG42854-PA 160 CG42854-PA 2..158 35..187 199 34 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15191-PA 181 GL15191-PA 1..171 23..187 159 27.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22902-PA 181 GA22902-PA 1..171 23..187 149 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21246-PA 108 GM21246-PA 6..101 104..199 480 94.8 Plus
Dsec\GM21236-PA 78 GM21236-PA 1..74 1..74 307 82.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15687-PA 146 GD15687-PA 40..140 78..176 144 33.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12373-PA 178 GK12373-PA 10..170 24..187 207 32.7 Plus
Dwil\GK16074-PA 177 GK16074-PA 10..162 24..179 202 33.1 Plus
Dwil\GK12318-PA 182 GK12318-PA 47..177 32..187 149 30.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17445-PA 206 GE17445-PA 1..199 1..199 903 83.9 Plus
Dyak\GE12634-PA 266 GE12634-PA 101..249 41..176 168 34.9 Plus
Dyak\GE14977-PA 236 GE14977-PA 38..188 21..155 151 32.5 Plus