Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE16275.complete Sequence
1532 bp (1532 high quality bases) assembled on 2002-04-21
GenBank Submission: AY113415
> RE16275.complete
GGTTGTTGCCTTCGCGGCAATTGTTTTATGTGAAATTTGTCACACTGTCA
TGGGCAGCTCCTTCAAAGTTTAGCCGCCAACGCCCACAAATATGTGGACC
CTCCCATGATTGATGGGCATCTTGCGTACAAATTAACACCGGAATTACTC
CTCGTGCACTGCAGGCCAAGTTCGGCGAACTTCCAACGATTTTCGACTCC
ACCCCAAACCCAAAAAAAAAAAGACATAACAAAAAAAGTAACGAAAAAGG
AAGATGCGTTTTGGCCCATTTCAAATGAAGCCGACTTTCAATTAGGCAAA
AACTTGGCAGCAAACCAAAAACAAAAGCAAGCTAATGAGACGACGACTGA
GTTTGGCCGGAGGTGCGATCGTGACTTCGAATGCGACCAGTGTCAAAGGC
GCAGCTGGATATTCTGATTAATCGCCATGAGCCAGATCCTAGCTGCCTTT
TATTAATTACGATCCAGCTCCAGATCGAGTGCGTATATGGATGTGGACAT
GGATGTGGATGTGGATATGGACATGGATGTGAATGTCTCGGGGAGACGCG
TGCTCAAGGCGTGAATACCATCGTCAACAAGCTAGCACCTCTCGCTCTGA
ATTATTGCTGAAATATTTGCTGATTTATTGGCACCAACTCGCTTGTTGCA
CTTGGCACGCCATGTGCGTGTTTTTTTTTAGCGAGACCCAAAGAGATCAC
TGGGAAAAAAGACAGCTCAGTTCCCAGTCCTTTGAATTAGATAAATATAT
TGAAAAGAAAAAAACTTCAGCGGAAATTGTATTAAGTATGATGTGATCAG
TTAAATATGAAGTATACGTATTCATAATAGTTAAGTTTTACATTTTGTTT
TAAAACATGCTTCATAACATCATTATTATTTTTTAACAATATCTCCCCCT
TGCTAACAATTATTTCACTTACTACACCATAATAGCTTTTTCAGTGCCCA
TGCAACCTTGTTGCAATTAGTTTTTGCATCACCACCCAGCGAGTAACGAG
TAACCGTGGCGTATCATCTTACCTTTTGGGCCAACCTTGAACTGGCCAAG
ACAGAGGCCCTAAATCTGGCTCTTTTCAGCTCTTCAGCCTTTCAGCTCTC
CAGTGAGCCACATGACGCGACTTGGCAGCAACTGCAGCTCATCTCGGTTC
AGTTCGGGCAGACTTCCGTGTAATTAAGTGGCGTTCACAATGCGCTCCAC
CACCCATTGTGTGCTGGATTTCAGACAGAACCAGGATCCTCCCTTCACCA
GCCCCATCTCCTTGGCCATGATCTCGTGCCCCACAGATGGCCCCACAAGC
AAATTCTTTGTGAAGGCCCAGACAAGCGAATGCACATGACTTCAACGAGG
AGACGTCGTCGCAAACTGGATTTGGGCGCCAGTTAGGCACAATGGGTAGG
ATGTCTCTAACGCAGAGTCTTCGAAGTTTATAATACACTGAAATTTGGAA
TATTTATGGTATATACATAGTCTAAATACAAATAAGCTTAAAATGTGATG
TAGCTCCTAATATTTGAAAAAAAAAAAAAAAA
RE16275.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31647-RB | 1515 | CG31647-RB | 1..1515 | 2..1516 | 7575 | 100 | Plus |
CG31647-RA | 2029 | CG31647-RA | 513..2029 | 2..1516 | 7530 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 5434680..5435809 | 1516..387 | 5650 | 100 | Minus |
chr2L | 23010047 | chr2L | 5435865..5436199 | 386..52 | 1675 | 100 | Minus |
chr2L | 23010047 | chr2L | 5438325..5438375 | 52..2 | 255 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5435579..5436711 | 1519..387 | 5665 | 100 | Minus |
2L | 23513712 | 2L | 5436767..5437101 | 386..52 | 1675 | 100 | Minus |
2L | 23513712 | 2L | 5439227..5439277 | 52..2 | 255 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5435579..5436711 | 1519..387 | 5665 | 100 | Minus |
2L | 23513712 | 2L | 5436767..5437101 | 386..52 | 1675 | 100 | Minus |
2L | 23513712 | 2L | 5439227..5439277 | 52..2 | 255 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 12:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blood | 7410 | blood BLOOD 7410bp | 5375..5439 | 880..817 | 124 | 67.7 | Minus |
accord2 | 7650 | accord2 QBERT 7650bp | 418..517 | 825..924 | 113 | 59.8 | Plus |
S2 | 1735 | S2 S2 1735bp | 1437..1597 | 731..888 | 112 | 57.3 | Plus |
RE16275.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:31:35 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 5434680..5435809 | 387..1516 | 95 | <- | Minus |
chr2L | 5435865..5436199 | 52..386 | 100 | <- | Minus |
chr2L | 5438326..5438375 | 1..51 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:53 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RA | 512..930 | 1..417 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:59:58 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RB | 1..312 | 106..417 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:53:16 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RA | 512..930 | 1..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:40:51 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RB | 1..1517 | 2..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:59:58 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RB | 1..1515 | 2..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:53:16 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31647-RB | 1..1517 | 2..1516 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:31:35 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5435582..5436711 | 387..1516 | 100 | <- | Minus |
2L | 5436767..5437101 | 52..386 | 100 | <- | Minus |
2L | 5439228..5439277 | 1..51 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:31:35 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5435582..5436711 | 387..1516 | 100 | <- | Minus |
2L | 5436767..5437101 | 52..386 | 100 | <- | Minus |
2L | 5439228..5439277 | 1..51 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:31:35 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5435582..5436711 | 387..1516 | 100 | <- | Minus |
2L | 5436767..5437101 | 52..386 | 100 | <- | Minus |
2L | 5439228..5439277 | 1..51 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:57:04 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5435582..5436711 | 387..1516 | 100 | <- | Minus |
arm_2L | 5436767..5437101 | 52..386 | 100 | <- | Minus |
arm_2L | 5439228..5439277 | 1..51 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:57:04 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5435582..5436711 | 387..1516 | 100 | <- | Minus |
arm_2L | 5436767..5437101 | 52..386 | 100 | <- | Minus |
arm_2L | 5439228..5439277 | 1..51 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:57:04 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5435582..5436711 | 387..1516 | 100 | <- | Minus |
arm_2L | 5436767..5437101 | 52..386 | 100 | <- | Minus |
arm_2L | 5439228..5439277 | 1..51 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:25:25 Download gff for
RE16275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5435582..5436711 | 387..1516 | 100 | <- | Minus |
2L | 5436767..5437101 | 52..386 | 100 | <- | Minus |
2L | 5439228..5439277 | 1..51 | 98 | | Minus |
RE16275.hyp Sequence
Translation from 105 to 416
> RE16275.hyp
MIDGHLAYKLTPELLLVHCRPSSANFQRFSTPPQTQKKKDITKKVTKKED
AFWPISNEADFQLGKNLAANQKQKQANETTTEFGRRCDRDFECDQCQRRS
WIF*
Sequence RE16275.hyp has no blast hits.
RE16275.pep Sequence
Translation from 105 to 416
> RE16275.pep
MIDGHLAYKLTPELLLVHCRPSSANFQRFSTPPQTQKKKDITKKVTKKED
AFWPISNEADFQLGKNLAANQKQKQANETTTEFGRRCDRDFECDQCQRRS
WIF*
RE16275.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG16683-PA | 42 | GG16683-PA | 1..42 | 1..44 | 173 | 81.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19445-PA | 49 | GM19445-PA | 1..48 | 1..48 | 203 | 81.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17822-PA | 41 | GD17822-PA | 1..41 | 1..41 | 201 | 90.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE19000-PA | 72 | GE19000-PA | 2..71 | 38..102 | 258 | 78.6 | Plus |