Clone RE16275 Report

Search the DGRC for RE16275

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:162
Well:75
Vector:pFlc-1
Associated Gene/TranscriptCG31647-RB
Protein status:RE16275.pep: wuzgold
Sequenced Size:1532

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12512 2002-01-01 Sim4 clustering to Release 2
CG31647 2002-04-21 Blastp of sequenced clone
CG31647 2003-01-01 Sim4 clustering to Release 3
CG31647 2008-04-29 Release 5.5 accounting
CG31647 2008-08-15 Release 5.9 accounting
CG31647 2008-12-18 5.12 accounting

Clone Sequence Records

RE16275.complete Sequence

1532 bp (1532 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113415

> RE16275.complete
GGTTGTTGCCTTCGCGGCAATTGTTTTATGTGAAATTTGTCACACTGTCA
TGGGCAGCTCCTTCAAAGTTTAGCCGCCAACGCCCACAAATATGTGGACC
CTCCCATGATTGATGGGCATCTTGCGTACAAATTAACACCGGAATTACTC
CTCGTGCACTGCAGGCCAAGTTCGGCGAACTTCCAACGATTTTCGACTCC
ACCCCAAACCCAAAAAAAAAAAGACATAACAAAAAAAGTAACGAAAAAGG
AAGATGCGTTTTGGCCCATTTCAAATGAAGCCGACTTTCAATTAGGCAAA
AACTTGGCAGCAAACCAAAAACAAAAGCAAGCTAATGAGACGACGACTGA
GTTTGGCCGGAGGTGCGATCGTGACTTCGAATGCGACCAGTGTCAAAGGC
GCAGCTGGATATTCTGATTAATCGCCATGAGCCAGATCCTAGCTGCCTTT
TATTAATTACGATCCAGCTCCAGATCGAGTGCGTATATGGATGTGGACAT
GGATGTGGATGTGGATATGGACATGGATGTGAATGTCTCGGGGAGACGCG
TGCTCAAGGCGTGAATACCATCGTCAACAAGCTAGCACCTCTCGCTCTGA
ATTATTGCTGAAATATTTGCTGATTTATTGGCACCAACTCGCTTGTTGCA
CTTGGCACGCCATGTGCGTGTTTTTTTTTAGCGAGACCCAAAGAGATCAC
TGGGAAAAAAGACAGCTCAGTTCCCAGTCCTTTGAATTAGATAAATATAT
TGAAAAGAAAAAAACTTCAGCGGAAATTGTATTAAGTATGATGTGATCAG
TTAAATATGAAGTATACGTATTCATAATAGTTAAGTTTTACATTTTGTTT
TAAAACATGCTTCATAACATCATTATTATTTTTTAACAATATCTCCCCCT
TGCTAACAATTATTTCACTTACTACACCATAATAGCTTTTTCAGTGCCCA
TGCAACCTTGTTGCAATTAGTTTTTGCATCACCACCCAGCGAGTAACGAG
TAACCGTGGCGTATCATCTTACCTTTTGGGCCAACCTTGAACTGGCCAAG
ACAGAGGCCCTAAATCTGGCTCTTTTCAGCTCTTCAGCCTTTCAGCTCTC
CAGTGAGCCACATGACGCGACTTGGCAGCAACTGCAGCTCATCTCGGTTC
AGTTCGGGCAGACTTCCGTGTAATTAAGTGGCGTTCACAATGCGCTCCAC
CACCCATTGTGTGCTGGATTTCAGACAGAACCAGGATCCTCCCTTCACCA
GCCCCATCTCCTTGGCCATGATCTCGTGCCCCACAGATGGCCCCACAAGC
AAATTCTTTGTGAAGGCCCAGACAAGCGAATGCACATGACTTCAACGAGG
AGACGTCGTCGCAAACTGGATTTGGGCGCCAGTTAGGCACAATGGGTAGG
ATGTCTCTAACGCAGAGTCTTCGAAGTTTATAATACACTGAAATTTGGAA
TATTTATGGTATATACATAGTCTAAATACAAATAAGCTTAAAATGTGATG
TAGCTCCTAATATTTGAAAAAAAAAAAAAAAA

RE16275.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31647-RB 1515 CG31647-RB 1..1515 2..1516 7575 100 Plus
CG31647-RA 2029 CG31647-RA 513..2029 2..1516 7530 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5434680..5435809 1516..387 5650 100 Minus
chr2L 23010047 chr2L 5435865..5436199 386..52 1675 100 Minus
chr2L 23010047 chr2L 5438325..5438375 52..2 255 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5435579..5436711 1519..387 5665 100 Minus
2L 23513712 2L 5436767..5437101 386..52 1675 100 Minus
2L 23513712 2L 5439227..5439277 52..2 255 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5435579..5436711 1519..387 5665 100 Minus
2L 23513712 2L 5436767..5437101 386..52 1675 100 Minus
2L 23513712 2L 5439227..5439277 52..2 255 100 Minus
Blast to na_te.dros performed 2019-03-16 12:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 5375..5439 880..817 124 67.7 Minus
accord2 7650 accord2 QBERT 7650bp 418..517 825..924 113 59.8 Plus
S2 1735 S2 S2 1735bp 1437..1597 731..888 112 57.3 Plus

RE16275.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:31:35 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5434680..5435809 387..1516 95 <- Minus
chr2L 5435865..5436199 52..386 100 <- Minus
chr2L 5438326..5438375 1..51 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:53 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RA 512..930 1..417 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:59:58 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RB 1..312 106..417 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:53:16 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RA 512..930 1..417 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:40:51 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RB 1..1517 2..1516 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:59:58 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RB 1..1515 2..1516 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:53:16 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
CG31647-RB 1..1517 2..1516 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:31:35 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5435582..5436711 387..1516 100 <- Minus
2L 5436767..5437101 52..386 100 <- Minus
2L 5439228..5439277 1..51 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:31:35 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5435582..5436711 387..1516 100 <- Minus
2L 5436767..5437101 52..386 100 <- Minus
2L 5439228..5439277 1..51 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:31:35 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5435582..5436711 387..1516 100 <- Minus
2L 5436767..5437101 52..386 100 <- Minus
2L 5439228..5439277 1..51 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:57:04 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5435582..5436711 387..1516 100 <- Minus
arm_2L 5436767..5437101 52..386 100 <- Minus
arm_2L 5439228..5439277 1..51 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:57:04 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5435582..5436711 387..1516 100 <- Minus
arm_2L 5436767..5437101 52..386 100 <- Minus
arm_2L 5439228..5439277 1..51 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:57:04 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5435582..5436711 387..1516 100 <- Minus
arm_2L 5436767..5437101 52..386 100 <- Minus
arm_2L 5439228..5439277 1..51 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:25:25 Download gff for RE16275.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5435582..5436711 387..1516 100 <- Minus
2L 5436767..5437101 52..386 100 <- Minus
2L 5439228..5439277 1..51 98   Minus

RE16275.hyp Sequence

Translation from 105 to 416

> RE16275.hyp
MIDGHLAYKLTPELLLVHCRPSSANFQRFSTPPQTQKKKDITKKVTKKED
AFWPISNEADFQLGKNLAANQKQKQANETTTEFGRRCDRDFECDQCQRRS
WIF*
Sequence RE16275.hyp has no blast hits.

RE16275.pep Sequence

Translation from 105 to 416

> RE16275.pep
MIDGHLAYKLTPELLLVHCRPSSANFQRFSTPPQTQKKKDITKKVTKKED
AFWPISNEADFQLGKNLAANQKQKQANETTTEFGRRCDRDFECDQCQRRS
WIF*

RE16275.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16683-PA 42 GG16683-PA 1..42 1..44 173 81.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19445-PA 49 GM19445-PA 1..48 1..48 203 81.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17822-PA 41 GD17822-PA 1..41 1..41 201 90.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19000-PA 72 GE19000-PA 2..71 38..102 258 78.6 Plus