Clone RE16319 Report

Search the DGRC for RE16319

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:163
Well:19
Vector:pFlc-1
Associated Gene/Transcriptpxb-RA
Protein status:RE16319.pep: wuzgold
Preliminary Size:270
Sequenced Size:2314

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14873 2002-01-01 Sim4 clustering to Release 2
CG33207 2002-01-03 Blastp of sequenced clone
CG33207 2003-01-01 Sim4 clustering to Release 3
pxb 2008-04-29 Release 5.5 accounting
pxb 2008-08-15 Release 5.9 accounting
pxb 2008-12-18 5.12 accounting

Clone Sequence Records

RE16319.complete Sequence

2314 bp (2314 high quality bases) assembled on 2002-01-03

GenBank Submission: AY089588

> RE16319.complete
AGTTTTTGACTCGACGTCGCAGGAAACGGACGTGAGTGTCTCGCATGTTG
CCACAATAATCGAAAAGAAAACTCTGAACGGAATACGAGACTTTTTTCAA
GATATGTGAATCACTAGTGGATTACTGAAAACGAAAATAAATACCAACGA
AAATATTTACCACAAATCCCAAGCAAACGATACGCGCGTCGTGCAAACTA
ATAATAATAAATCAAATACCACAAATATTCTGTGTTGAGTGATACTCGAA
AAGTTGTCAAAAATCAAAGCGAAATTCGCAAGCAATACATTGGATTAACA
ATTGGCTCGAAACCGATTTGATTAGCTAGCAAAAGACAAGCAGAAACAGT
TTATCAAACCACTTGACAAATATCCGTTGGACTATAAAAGCAGAAAAGCG
GCTACAAGGCCGCCAATGAAGGCTGTCCAGATGACAGCGATCGGGCAGCG
AATTTGACACGCACCCAAAAACATCAAAGCGACTCGCAACCGAAACGGTT
AACCCCCCTTATATAGATAATTCCCCGCAGTCCCGAAGATCGAGGAGGTA
TACCACCTATACCACTCCCCGTCCAGCCGAAATCACACGTACTCAATGTG
GAAAATGCTGGATATGATGGAACTGTCCGAAGCAGAGCTCTTCATGTTCG
ACTGCGACGATTGCTCGGGCACGCCCCTTGCCCCACCGCCCCAGTTCCTC
ATCCCACCGCCACCAAGACCGCCGGCCCTGGCCGAATTCACGGTGGTGCC
GCAGGATTGCAACGAGGAGCAATTGGCCCAGCAGCAATGGGAGAGCGATG
TCTGCCAGGCAATGCCGGTAAGTGGGAAAATCTACCCAAAATATGATAAG
CCCATTATAAAAACTCGAAAAATTCTCCAATATTAAATCTCTTGCTATTT
AAATTAGTTGAAAACAAAACATTATTTATTCAAAGCTCAAAACTGTATAT
TCCTGCTAATGCGCAGAGTTTTCATTCCTGACCTTCGATGACATTTCCTT
CCCCAGTGCAACTTAGGCTGATTATAATTTTGAGGGCGTTGCAAATGGGA
TTTTCCAACCCGACCCCACGGGTGGATGATTATGCAACCCAACCCTCTCC
GCAGTGCCATAATGAGGCCTGCATTTTGGCACAGCTGTCGAGATTTTCCC
CTGTCTGTTGATTTTCCGCTCGCCGAAACGAGTTGCAAGTGATTTGGCTT
TTTGTGTGAGGTGTCAGAATTGTATGTTGCCTCATTGAATTATGTGCTAT
ATGCATATTACAATAACAAAAGCCTTCTTGTCGCTTTTCAAGTGGTGGGT
TGTGGCTGTGGGCGTGGCCGGAGGGGTTGATTATGAGCTGGTAGAGCTGA
AAATAAATGTTAGCAGTTGAGTAGGCACTCGAAATACCCGGCGAAGGATG
CGAATTGATTTATTGACAAGCTAAAATTATGCCACCTGATCGAAAATCTG
TTCGATTTGTGGCCTAAGAGGATAATTGCTGGATAACAAATTATTATTGA
CATTATTTTGCTTAGCCAACAAGCCGCCTGAACTGGAAAACACATTCGAG
TTATCTGAAATACTAGTAGAAGGCATTCAAAACTCTATGACCTCTTTAAG
GCCATTAAACTTTAAGTTAGCCATCCGAAAGCACAAAAAAGGACTCGATG
AAAAATTGCCAACCTGCCACGCCCACTCGAACAGACGTAGCCCACAATTC
GGGTGCCGGCAGGAACCGCAAAGGAATCACTTTAAAGCAAAGTGAAACAA
ATTTCTTTTCGTTTCAAGTCCTTTTGGCCTCCAGTTGCCGGAGCAACAGC
TGTTGCGCCTTGGCGTGTTGTTGTTGCCCCCATCATTATAAGGACGAATA
AGGACGATACCGACGATGCTGGCCATCCCCTTGGACAGTGGAAGCCCAGT
AACAGTTACACTGGAAATTACAATAACAATGAAAAGTTAAACGGCAGCAA
CACAACACAAAAAGGACAACAAGGAGCATTTTTCGGCCGCCAGTCGTCGG
CAACATATGGCCCGAAATCAACCCTCAACTTTAAAAGGTTGTCAGCGGTT
ACAAAGGCAAAAAACAAAATAGATATTTCTATATAATTTCTGGCCTCAGA
CCGAAAACAGCCAGATAGATAATTTTCCATGTGGAAAAACTGTAACTCGG
CACTCGTCTAATCTGGGGCAAGTGTTTGTTTAGGCGCTGGCGATGATGGC
TGGGGGTAAACTTCTGGTAAAACAAAGATCAAATTCCACATATCAACACC
GCAGCGGTCATTGATAAAATTTCACGTGCTCCAAAAATGGAAAAATGGAA
AAAAAAAAAAAAAA

RE16319.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
pxb-RA 2304 pxb-RA 7..2302 1..2296 11465 99.9 Plus
pxb.a 4585 pxb.a 27..843 1..817 4085 100 Plus
pxb-RB 3146 pxb-RB 27..843 1..817 4085 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11496387..11498282 401..2296 9240 99.2 Plus
chr3R 27901430 chr3R 11490804..11491212 1..401 1875 97.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15671764..15673676 401..2313 9505 99.8 Plus
3R 32079331 3R 15666186..15666586 1..401 2005 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15412595..15414507 401..2313 9505 99.7 Plus
3R 31820162 3R 15407017..15407417 1..401 2005 100 Plus
Blast to na_te.dros performed 2019-03-15 14:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 708..766 1656..1596 128 72.1 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 6437..6526 193..291 123 67.6 Plus
Tabor 7345 Tabor TABOR 7345bp 4721..4878 256..413 122 58.9 Plus
transib4 2656 transib4 TRANSIB4 2656bp 350..404 294..242 117 70.9 Minus

RE16319.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:05:58 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11490804..11491212 1..401 97 -> Plus
chr3R 11496388..11498284 402..2298 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:54 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RA 1..291 596..886 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:55:55 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RA 1..291 596..886 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:17:46 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 1..229 596..825 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:48 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RA 1..291 596..886 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:49:47 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 1..229 596..825 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:19:55 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RA 1..2298 1..2298 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:55:55 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RA 1..2298 1..2298 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:17:46 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 4..827 1..825 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:48 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RA 1..2298 1..2298 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:49:47 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
pxb-RB 4..827 1..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:58 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15666186..15666586 1..401 100 -> Plus
3R 15671765..15673661 402..2298 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:58 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15666186..15666586 1..401 100 -> Plus
3R 15671765..15673661 402..2298 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:05:58 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15666186..15666586 1..401 100 -> Plus
3R 15671765..15673661 402..2298 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:17:46 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11491908..11492308 1..401 100 -> Plus
arm_3R 11497487..11499383 402..2298 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:55:25 Download gff for RE16319.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15407017..15407417 1..401 100 -> Plus
3R 15412596..15414492 402..2298 99   Plus

RE16319.hyp Sequence

Translation from 595 to 885

> RE16319.hyp
MWKMLDMMELSEAELFMFDCDDCSGTPLAPPPQFLIPPPPRPPALAEFTV
VPQDCNEEQLAQQQWESDVCQAMPVSGKIYPKYDKPIIKTRKILQY*

RE16319.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
pxb-PC 636 CG33207-PC 1..75 1..75 417 98.7 Plus
pxb-PB 636 CG33207-PB 1..75 1..75 417 98.7 Plus

RE16319.pep Sequence

Translation from 595 to 885

> RE16319.pep
MWKMLDMMELSEAELFMFDCDDCSGTPLAPPPQFLIPPPPRPPALAEFTV
VPQDCNEEQLAQQQWESDVCQAMPVSGKIYPKYDKPIIKTRKILQY*

RE16319.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18530-PA 639 GF18530-PA 1..75 1..75 280 89.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16937-PA 640 GG16937-PA 1..75 1..75 410 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18208-PA 708 GH18208-PA 1..70 4..75 217 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
pxb-PC 636 CG33207-PC 1..75 1..75 417 98.7 Plus
pxb-PB 636 CG33207-PB 1..75 1..75 417 98.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10161-PA 662 GI10161-PA 1..70 4..75 222 84.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12694-PA 383 GL12694-PA 1..78 4..75 205 66.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17369-PB 661 GA17369-PB 1..81 1..75 218 76.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24246-PA 636 GM24246-PA 1..75 1..75 412 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19035-PA 635 GD19035-PA 1..75 1..75 304 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10863-PA 662 GJ10863-PA 1..70 4..75 222 83.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11405-PA 662 GK11405-PA 1..72 4..75 241 80.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24325-PA 638 GE24325-PA 1..75 1..75 410 97.3 Plus