BDGP Sequence Production Resources |
Search the DGRC for RE16319
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 163 |
Well: | 19 |
Vector: | pFlc-1 |
Associated Gene/Transcript | pxb-RA |
Protein status: | RE16319.pep: wuzgold |
Preliminary Size: | 270 |
Sequenced Size: | 2314 |
Gene | Date | Evidence |
---|---|---|
CG14873 | 2002-01-01 | Sim4 clustering to Release 2 |
CG33207 | 2002-01-03 | Blastp of sequenced clone |
CG33207 | 2003-01-01 | Sim4 clustering to Release 3 |
pxb | 2008-04-29 | Release 5.5 accounting |
pxb | 2008-08-15 | Release 5.9 accounting |
pxb | 2008-12-18 | 5.12 accounting |
2314 bp (2314 high quality bases) assembled on 2002-01-03
GenBank Submission: AY089588
> RE16319.complete AGTTTTTGACTCGACGTCGCAGGAAACGGACGTGAGTGTCTCGCATGTTG CCACAATAATCGAAAAGAAAACTCTGAACGGAATACGAGACTTTTTTCAA GATATGTGAATCACTAGTGGATTACTGAAAACGAAAATAAATACCAACGA AAATATTTACCACAAATCCCAAGCAAACGATACGCGCGTCGTGCAAACTA ATAATAATAAATCAAATACCACAAATATTCTGTGTTGAGTGATACTCGAA AAGTTGTCAAAAATCAAAGCGAAATTCGCAAGCAATACATTGGATTAACA ATTGGCTCGAAACCGATTTGATTAGCTAGCAAAAGACAAGCAGAAACAGT TTATCAAACCACTTGACAAATATCCGTTGGACTATAAAAGCAGAAAAGCG GCTACAAGGCCGCCAATGAAGGCTGTCCAGATGACAGCGATCGGGCAGCG AATTTGACACGCACCCAAAAACATCAAAGCGACTCGCAACCGAAACGGTT AACCCCCCTTATATAGATAATTCCCCGCAGTCCCGAAGATCGAGGAGGTA TACCACCTATACCACTCCCCGTCCAGCCGAAATCACACGTACTCAATGTG GAAAATGCTGGATATGATGGAACTGTCCGAAGCAGAGCTCTTCATGTTCG ACTGCGACGATTGCTCGGGCACGCCCCTTGCCCCACCGCCCCAGTTCCTC ATCCCACCGCCACCAAGACCGCCGGCCCTGGCCGAATTCACGGTGGTGCC GCAGGATTGCAACGAGGAGCAATTGGCCCAGCAGCAATGGGAGAGCGATG TCTGCCAGGCAATGCCGGTAAGTGGGAAAATCTACCCAAAATATGATAAG CCCATTATAAAAACTCGAAAAATTCTCCAATATTAAATCTCTTGCTATTT AAATTAGTTGAAAACAAAACATTATTTATTCAAAGCTCAAAACTGTATAT TCCTGCTAATGCGCAGAGTTTTCATTCCTGACCTTCGATGACATTTCCTT CCCCAGTGCAACTTAGGCTGATTATAATTTTGAGGGCGTTGCAAATGGGA TTTTCCAACCCGACCCCACGGGTGGATGATTATGCAACCCAACCCTCTCC GCAGTGCCATAATGAGGCCTGCATTTTGGCACAGCTGTCGAGATTTTCCC CTGTCTGTTGATTTTCCGCTCGCCGAAACGAGTTGCAAGTGATTTGGCTT TTTGTGTGAGGTGTCAGAATTGTATGTTGCCTCATTGAATTATGTGCTAT ATGCATATTACAATAACAAAAGCCTTCTTGTCGCTTTTCAAGTGGTGGGT TGTGGCTGTGGGCGTGGCCGGAGGGGTTGATTATGAGCTGGTAGAGCTGA AAATAAATGTTAGCAGTTGAGTAGGCACTCGAAATACCCGGCGAAGGATG CGAATTGATTTATTGACAAGCTAAAATTATGCCACCTGATCGAAAATCTG TTCGATTTGTGGCCTAAGAGGATAATTGCTGGATAACAAATTATTATTGA CATTATTTTGCTTAGCCAACAAGCCGCCTGAACTGGAAAACACATTCGAG TTATCTGAAATACTAGTAGAAGGCATTCAAAACTCTATGACCTCTTTAAG GCCATTAAACTTTAAGTTAGCCATCCGAAAGCACAAAAAAGGACTCGATG AAAAATTGCCAACCTGCCACGCCCACTCGAACAGACGTAGCCCACAATTC GGGTGCCGGCAGGAACCGCAAAGGAATCACTTTAAAGCAAAGTGAAACAA ATTTCTTTTCGTTTCAAGTCCTTTTGGCCTCCAGTTGCCGGAGCAACAGC TGTTGCGCCTTGGCGTGTTGTTGTTGCCCCCATCATTATAAGGACGAATA AGGACGATACCGACGATGCTGGCCATCCCCTTGGACAGTGGAAGCCCAGT AACAGTTACACTGGAAATTACAATAACAATGAAAAGTTAAACGGCAGCAA CACAACACAAAAAGGACAACAAGGAGCATTTTTCGGCCGCCAGTCGTCGG CAACATATGGCCCGAAATCAACCCTCAACTTTAAAAGGTTGTCAGCGGTT ACAAAGGCAAAAAACAAAATAGATATTTCTATATAATTTCTGGCCTCAGA CCGAAAACAGCCAGATAGATAATTTTCCATGTGGAAAAACTGTAACTCGG CACTCGTCTAATCTGGGGCAAGTGTTTGTTTAGGCGCTGGCGATGATGGC TGGGGGTAAACTTCTGGTAAAACAAAGATCAAATTCCACATATCAACACC GCAGCGGTCATTGATAAAATTTCACGTGCTCCAAAAATGGAAAAATGGAA AAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cr1a | 4470 | Cr1a DMCR1A 4470bp | 708..766 | 1656..1596 | 128 | 72.1 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 6437..6526 | 193..291 | 123 | 67.6 | Plus |
Tabor | 7345 | Tabor TABOR 7345bp | 4721..4878 | 256..413 | 122 | 58.9 | Plus |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 350..404 | 294..242 | 117 | 70.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11490804..11491212 | 1..401 | 97 | -> | Plus |
chr3R | 11496388..11498284 | 402..2298 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pxb-RA | 1..291 | 596..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pxb-RA | 1..291 | 596..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pxb-RB | 1..229 | 596..825 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pxb-RA | 1..291 | 596..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pxb-RB | 1..229 | 596..825 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pxb-RA | 1..2298 | 1..2298 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pxb-RA | 1..2298 | 1..2298 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pxb-RB | 4..827 | 1..825 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pxb-RA | 1..2298 | 1..2298 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pxb-RB | 4..827 | 1..825 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15666186..15666586 | 1..401 | 100 | -> | Plus |
3R | 15671765..15673661 | 402..2298 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15666186..15666586 | 1..401 | 100 | -> | Plus |
3R | 15671765..15673661 | 402..2298 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15666186..15666586 | 1..401 | 100 | -> | Plus |
3R | 15671765..15673661 | 402..2298 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11491908..11492308 | 1..401 | 100 | -> | Plus |
arm_3R | 11497487..11499383 | 402..2298 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15407017..15407417 | 1..401 | 100 | -> | Plus |
3R | 15412596..15414492 | 402..2298 | 99 | Plus |
Translation from 595 to 885
> RE16319.hyp MWKMLDMMELSEAELFMFDCDDCSGTPLAPPPQFLIPPPPRPPALAEFTV VPQDCNEEQLAQQQWESDVCQAMPVSGKIYPKYDKPIIKTRKILQY*
Translation from 595 to 885
> RE16319.pep MWKMLDMMELSEAELFMFDCDDCSGTPLAPPPQFLIPPPPRPPALAEFTV VPQDCNEEQLAQQQWESDVCQAMPVSGKIYPKYDKPIIKTRKILQY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18530-PA | 639 | GF18530-PA | 1..75 | 1..75 | 280 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16937-PA | 640 | GG16937-PA | 1..75 | 1..75 | 410 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18208-PA | 708 | GH18208-PA | 1..70 | 4..75 | 217 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pxb-PC | 636 | CG33207-PC | 1..75 | 1..75 | 417 | 98.7 | Plus |
pxb-PB | 636 | CG33207-PB | 1..75 | 1..75 | 417 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10161-PA | 662 | GI10161-PA | 1..70 | 4..75 | 222 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12694-PA | 383 | GL12694-PA | 1..78 | 4..75 | 205 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17369-PB | 661 | GA17369-PB | 1..81 | 1..75 | 218 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24246-PA | 636 | GM24246-PA | 1..75 | 1..75 | 412 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19035-PA | 635 | GD19035-PA | 1..75 | 1..75 | 304 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10863-PA | 662 | GJ10863-PA | 1..70 | 4..75 | 222 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11405-PA | 662 | GK11405-PA | 1..72 | 4..75 | 241 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24325-PA | 638 | GE24325-PA | 1..75 | 1..75 | 410 | 97.3 | Plus |