BDGP Sequence Production Resources |
Search the DGRC for RE16378
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 163 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | PIG-V-RA |
Protein status: | RE16378.pep: gold |
Sequenced Size: | 1801 |
Gene | Date | Evidence |
---|---|---|
CG6657 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6657 | 2004-08-13 | Blastp of sequenced clone |
veg | 2008-04-29 | Release 5.5 accounting |
veg | 2008-08-15 | Release 5.9 accounting |
veg | 2008-12-18 | 5.12 accounting |
1801 bp (1801 high quality bases) assembled on 2004-08-13
GenBank Submission: BT016020
> RE16378.complete AGTGTCTAATGCTTCCTCAAACCCTCTGGTCACACCATGCTCTGCTTTTC CGGGCTTCTGCCCAAAAATAATATATAATAATAAAACCGCTTCACAAAGT AAATGTCACCAAAAGAGAAGGCAGTTCAAGAAGCAACCGAGGAGCTGATT TGCCTTTTTCCCTCCGCAGCAGTGTCCAGGCCAGAAGATCCGTCCACATC GTTTTAGCTGTGAGACCTAGAAATCTGAAATGACAGAGAAAGTGACTAAA CTGGCGCTGGCCAGTCGCCTTATCGTCCTCCTGGTACAATTGGTCGCCAA CGGAGCCCTGCCAGAGCACAAACCAGATGTATTCCGGATGCCGGTTTCGT CAGATCAGAATGCCTCCTGGATAGACAAGGTGATTAAGCGCTGCTTGGGA GGATTACGGCACTGGGATGGAGAATACTTTCTGCATATAGCCGAGAATCT GTACAGCTACGAAAACACGTTGGCCTTCTATCCACTATATCCGGTTGTCG TGCGTCACGTGGGACAGGCCGTGGAGGCCATCGGGATCTCCTTATCACAG GAATCTATCCTGCTGGTGGTGGCTGTCGCCCTGAACTTCTGGCTCTTCTG CGAGTCAGCTAATTTGCTGTTTCAGCTCACCCAAGTATTGTTCAACGATT TAAACAAGAGCTGGAATGCGGCCCTCATCTACTGCTTTAATCCGGCAACC ATTTTCTTCACCGCCGCCTACTCAGAGACCTTTTTCGCCTACTCCAGCCT TCATCTGATGCTGGAGTGCTCGAAGCCGACGGGTAGCTTCCGATATCTGC GTTTGGGAACCGCCTTAGCCGCCTGTTTACTGTGCCGCTCAAATGGATTA ATCACCTTGGGATACCCGCTCTACTTCTTCGGACGCCAACTGCTACTCAA GAACAAGGAGCCCAACACCTGCATGCAGCTGACACAAATGACGCTGACCA TTCTGGGAGCCATTGGGATACTGCACACCTACTATTTCTACATATACAGG CTATACTGTCTGCCGAACACAAGGCCAAACCATCCGCAGCACATTGTGGA CTACGCAGTGGAACGGAAGTACCTATTGTCTGGCCAGGGCTCTGAAGGAT CACCTTGGTGCCAGTACACGTTGCCGTTCCCCTACACTTACGTGCAGTCG CACTACTGGGATGTGGGCTTCCTGCGATACTACAAGTGGAAACAGCTGCC CAACTTCTTGCTGGCCCTGCCCATGCTGAGTTTCATGCACTGGCACTGCT ACGACTACATGCAGCATTTGGCCAAAGCGGTCTGGGCCAAATTGACGCCC TCTGGCTTCAAGGAGCTGATAAGGGACCACACCACATTCCCTTTCGTGCT GCACGCTGCGATTCTCACCCTTGTCTGCACCGTCTACGTGCACATCCAAG TGTCCACACGCCTCCTGGCCTCGGCCACACCTGTTTTCTACTGGTTTGCC GCTGACCACATGCCCAAGACACTGGCCCAACTAAAACTGCGTTCGAAGGC AGGAGCTCTCTTTGTATGGTGCACCACTTATAGTTTGGTGGGCACGGTGC TATTCAGTAATAATTACCCGTGGACGTGAGCAAAATGATTGAAGTAAAAG GAGCAATATAACTCGCTGGTTGCCAAAGAGACTGTTCATCCGCATGGATT TCTTTTTTAGTGTGTAAATAATCGTCCAAGTTCTCAAAATTCAATTGTTG AGGCGCTCAAAAGTATTGGTTTCCCATTTCTATTTCCATATATCATATAC AAAAAAGTAAAAAATAAAATTGTTGACCATTTTAGAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
veg-RA | 1798 | veg-RA | 1..1789 | 1..1789 | 8945 | 100 | Plus |
veg.a | 1792 | veg.a | 1..1783 | 1..1789 | 8830 | 99.6 | Plus |
veg-RB | 1858 | veg-RB | 273..1849 | 213..1789 | 7885 | 100 | Plus |
veg-RB | 1858 | veg-RB | 1..214 | 1..214 | 1070 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 12842932..12844502 | 215..1785 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
veg-RB | 1..1350 | 230..1579 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
veg-RB | 1..1350 | 230..1579 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PIG-V-RA | 1..1350 | 230..1579 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
veg-RB | 1..1350 | 230..1579 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PIG-V-RA | 1..1350 | 230..1579 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
veg-RA | 1..1785 | 1..1785 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
veg-RA | 1..1785 | 1..1785 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PIG-V-RA | 7..1791 | 1..1785 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
veg-RA | 1..1785 | 1..1785 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PIG-V-RA | 7..1791 | 1..1785 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16955464..16955677 | 1..214 | 100 | -> | Plus |
2R | 16955738..16957308 | 215..1785 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16955464..16955677 | 1..214 | 100 | -> | Plus |
2R | 16955738..16957308 | 215..1785 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16955464..16955677 | 1..214 | 100 | -> | Plus |
2R | 16955738..16957308 | 215..1785 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 12842969..12843182 | 1..214 | 100 | -> | Plus |
arm_2R | 12843243..12844813 | 215..1785 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16956663..16956876 | 1..214 | 100 | -> | Plus |
2R | 16956937..16958507 | 215..1785 | 100 | Plus |
Translation from 229 to 1578
> RE16378.hyp MTEKVTKLALASRLIVLLVQLVANGALPEHKPDVFRMPVSSDQNASWIDK VIKRCLGGLRHWDGEYFLHIAENLYSYENTLAFYPLYPVVVRHVGQAVEA IGISLSQESILLVVAVALNFWLFCESANLLFQLTQVLFNDLNKSWNAALI YCFNPATIFFTAAYSETFFAYSSLHLMLECSKPTGSFRYLRLGTALAACL LCRSNGLITLGYPLYFFGRQLLLKNKEPNTCMQLTQMTLTILGAIGILHT YYFYIYRLYCLPNTRPNHPQHIVDYAVERKYLLSGQGSEGSPWCQYTLPF PYTYVQSHYWDVGFLRYYKWKQLPNFLLALPMLSFMHWHCYDYMQHLAKA VWAKLTPSGFKELIRDHTTFPFVLHAAILTLVCTVYVHIQVSTRLLASAT PVFYWFAADHMPKTLAQLKLRSKAGALFVWCTTYSLVGTVLFSNNYPWT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PIG-V-PC | 449 | CG44239-PC | 1..449 | 1..449 | 2414 | 100 | Plus |
PIG-V-PB | 449 | CG44239-PB | 1..449 | 1..449 | 2414 | 100 | Plus |
PIG-V-PA | 449 | CG44239-PA | 1..449 | 1..449 | 2414 | 100 | Plus |
Translation from 229 to 1578
> RE16378.pep MTEKVTKLALASRLIVLLVQLVANGALPEHKPDVFRMPVSSDQNASWIDK VIKRCLGGLRHWDGEYFLHIAENLYSYENTLAFYPLYPVVVRHVGQAVEA IGISLSQESILLVVAVALNFWLFCESANLLFQLTQVLFNDLNKSWNAALI YCFNPATIFFTAAYSETFFAYSSLHLMLECSKPTGSFRYLRLGTALAACL LCRSNGLITLGYPLYFFGRQLLLKNKEPNTCMQLTQMTLTILGAIGILHT YYFYIYRLYCLPNTRPNHPQHIVDYAVERKYLLSGQGSEGSPWCQYTLPF PYTYVQSHYWDVGFLRYYKWKQLPNFLLALPMLSFMHWHCYDYMQHLAKA VWAKLTPSGFKELIRDHTTFPFVLHAAILTLVCTVYVHIQVSTRLLASAT PVFYWFAADHMPKTLAQLKLRSKAGALFVWCTTYSLVGTVLFSNNYPWT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19771-PA | 454 | GF19771-PA | 1..454 | 1..449 | 1852 | 73.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20647-PA | 448 | GG20647-PA | 1..448 | 1..449 | 2083 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22950-PA | 452 | GH22950-PA | 1..452 | 1..449 | 1575 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PIG-V-PC | 449 | CG44239-PC | 1..449 | 1..449 | 2414 | 100 | Plus |
PIG-V-PB | 449 | CG44239-PB | 1..449 | 1..449 | 2414 | 100 | Plus |
PIG-V-PA | 449 | CG44239-PA | 1..449 | 1..449 | 2414 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18441-PA | 449 | GI18441-PA | 1..449 | 1..449 | 1604 | 64.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11574-PA | 452 | GL11574-PA | 1..452 | 1..449 | 1738 | 69.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19757-PA | 452 | GA19757-PA | 1..452 | 1..449 | 1730 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21742-PA | 449 | GM21742-PA | 1..449 | 1..449 | 2286 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11235-PA | 449 | GD11235-PA | 1..449 | 1..449 | 2286 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21525-PA | 449 | GJ21525-PA | 1..449 | 1..449 | 1607 | 63.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22036-PA | 459 | GK22036-PA | 1..459 | 1..449 | 1727 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11632-PA | 449 | GE11632-PA | 1..449 | 1..449 | 2206 | 93.1 | Plus |