Clone RE16378 Report

Search the DGRC for RE16378

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:163
Well:78
Vector:pFlc-1
Associated Gene/TranscriptPIG-V-RA
Protein status:RE16378.pep: gold
Sequenced Size:1801

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6657 2003-01-01 Sim4 clustering to Release 3
CG6657 2004-08-13 Blastp of sequenced clone
veg 2008-04-29 Release 5.5 accounting
veg 2008-08-15 Release 5.9 accounting
veg 2008-12-18 5.12 accounting

Clone Sequence Records

RE16378.complete Sequence

1801 bp (1801 high quality bases) assembled on 2004-08-13

GenBank Submission: BT016020

> RE16378.complete
AGTGTCTAATGCTTCCTCAAACCCTCTGGTCACACCATGCTCTGCTTTTC
CGGGCTTCTGCCCAAAAATAATATATAATAATAAAACCGCTTCACAAAGT
AAATGTCACCAAAAGAGAAGGCAGTTCAAGAAGCAACCGAGGAGCTGATT
TGCCTTTTTCCCTCCGCAGCAGTGTCCAGGCCAGAAGATCCGTCCACATC
GTTTTAGCTGTGAGACCTAGAAATCTGAAATGACAGAGAAAGTGACTAAA
CTGGCGCTGGCCAGTCGCCTTATCGTCCTCCTGGTACAATTGGTCGCCAA
CGGAGCCCTGCCAGAGCACAAACCAGATGTATTCCGGATGCCGGTTTCGT
CAGATCAGAATGCCTCCTGGATAGACAAGGTGATTAAGCGCTGCTTGGGA
GGATTACGGCACTGGGATGGAGAATACTTTCTGCATATAGCCGAGAATCT
GTACAGCTACGAAAACACGTTGGCCTTCTATCCACTATATCCGGTTGTCG
TGCGTCACGTGGGACAGGCCGTGGAGGCCATCGGGATCTCCTTATCACAG
GAATCTATCCTGCTGGTGGTGGCTGTCGCCCTGAACTTCTGGCTCTTCTG
CGAGTCAGCTAATTTGCTGTTTCAGCTCACCCAAGTATTGTTCAACGATT
TAAACAAGAGCTGGAATGCGGCCCTCATCTACTGCTTTAATCCGGCAACC
ATTTTCTTCACCGCCGCCTACTCAGAGACCTTTTTCGCCTACTCCAGCCT
TCATCTGATGCTGGAGTGCTCGAAGCCGACGGGTAGCTTCCGATATCTGC
GTTTGGGAACCGCCTTAGCCGCCTGTTTACTGTGCCGCTCAAATGGATTA
ATCACCTTGGGATACCCGCTCTACTTCTTCGGACGCCAACTGCTACTCAA
GAACAAGGAGCCCAACACCTGCATGCAGCTGACACAAATGACGCTGACCA
TTCTGGGAGCCATTGGGATACTGCACACCTACTATTTCTACATATACAGG
CTATACTGTCTGCCGAACACAAGGCCAAACCATCCGCAGCACATTGTGGA
CTACGCAGTGGAACGGAAGTACCTATTGTCTGGCCAGGGCTCTGAAGGAT
CACCTTGGTGCCAGTACACGTTGCCGTTCCCCTACACTTACGTGCAGTCG
CACTACTGGGATGTGGGCTTCCTGCGATACTACAAGTGGAAACAGCTGCC
CAACTTCTTGCTGGCCCTGCCCATGCTGAGTTTCATGCACTGGCACTGCT
ACGACTACATGCAGCATTTGGCCAAAGCGGTCTGGGCCAAATTGACGCCC
TCTGGCTTCAAGGAGCTGATAAGGGACCACACCACATTCCCTTTCGTGCT
GCACGCTGCGATTCTCACCCTTGTCTGCACCGTCTACGTGCACATCCAAG
TGTCCACACGCCTCCTGGCCTCGGCCACACCTGTTTTCTACTGGTTTGCC
GCTGACCACATGCCCAAGACACTGGCCCAACTAAAACTGCGTTCGAAGGC
AGGAGCTCTCTTTGTATGGTGCACCACTTATAGTTTGGTGGGCACGGTGC
TATTCAGTAATAATTACCCGTGGACGTGAGCAAAATGATTGAAGTAAAAG
GAGCAATATAACTCGCTGGTTGCCAAAGAGACTGTTCATCCGCATGGATT
TCTTTTTTAGTGTGTAAATAATCGTCCAAGTTCTCAAAATTCAATTGTTG
AGGCGCTCAAAAGTATTGGTTTCCCATTTCTATTTCCATATATCATATAC
AAAAAAGTAAAAAATAAAATTGTTGACCATTTTAGAAAAAAAAAAAAAAA
A

RE16378.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
veg-RA 1798 veg-RA 1..1789 1..1789 8945 100 Plus
veg.a 1792 veg.a 1..1783 1..1789 8830 99.6 Plus
veg-RB 1858 veg-RB 273..1849 213..1789 7885 100 Plus
veg-RB 1858 veg-RB 1..214 1..214 1070 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12842933..12844502 216..1785 7805 99.8 Plus
chr2R 21145070 chr2R 12842658..12842871 1..214 1040 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:37:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16955736..16957312 213..1789 7885 100 Plus
2R 25286936 2R 16955464..16955677 1..214 1070 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16956935..16958511 213..1789 7885 100 Plus
2R 25260384 2R 16956663..16956876 1..214 1070 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:35:01 has no hits.

RE16378.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:35:45 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12842932..12844502 215..1785 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:57:58 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
veg-RB 1..1350 230..1579 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:32:27 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
veg-RB 1..1350 230..1579 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:00:32 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-V-RA 1..1350 230..1579 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:16:19 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
veg-RB 1..1350 230..1579 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:40 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-V-RA 1..1350 230..1579 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:37:42 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
veg-RA 1..1785 1..1785 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:32:27 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
veg-RA 1..1785 1..1785 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:00:32 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-V-RA 7..1791 1..1785 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:16:21 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
veg-RA 1..1785 1..1785 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:40 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-V-RA 7..1791 1..1785 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:35:45 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16955464..16955677 1..214 100 -> Plus
2R 16955738..16957308 215..1785 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:35:45 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16955464..16955677 1..214 100 -> Plus
2R 16955738..16957308 215..1785 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:35:45 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16955464..16955677 1..214 100 -> Plus
2R 16955738..16957308 215..1785 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:00:32 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12842969..12843182 1..214 100 -> Plus
arm_2R 12843243..12844813 215..1785 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:53:15 Download gff for RE16378.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16956663..16956876 1..214 100 -> Plus
2R 16956937..16958507 215..1785 100   Plus

RE16378.hyp Sequence

Translation from 229 to 1578

> RE16378.hyp
MTEKVTKLALASRLIVLLVQLVANGALPEHKPDVFRMPVSSDQNASWIDK
VIKRCLGGLRHWDGEYFLHIAENLYSYENTLAFYPLYPVVVRHVGQAVEA
IGISLSQESILLVVAVALNFWLFCESANLLFQLTQVLFNDLNKSWNAALI
YCFNPATIFFTAAYSETFFAYSSLHLMLECSKPTGSFRYLRLGTALAACL
LCRSNGLITLGYPLYFFGRQLLLKNKEPNTCMQLTQMTLTILGAIGILHT
YYFYIYRLYCLPNTRPNHPQHIVDYAVERKYLLSGQGSEGSPWCQYTLPF
PYTYVQSHYWDVGFLRYYKWKQLPNFLLALPMLSFMHWHCYDYMQHLAKA
VWAKLTPSGFKELIRDHTTFPFVLHAAILTLVCTVYVHIQVSTRLLASAT
PVFYWFAADHMPKTLAQLKLRSKAGALFVWCTTYSLVGTVLFSNNYPWT*

RE16378.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-V-PC 449 CG44239-PC 1..449 1..449 2414 100 Plus
PIG-V-PB 449 CG44239-PB 1..449 1..449 2414 100 Plus
PIG-V-PA 449 CG44239-PA 1..449 1..449 2414 100 Plus

RE16378.pep Sequence

Translation from 229 to 1578

> RE16378.pep
MTEKVTKLALASRLIVLLVQLVANGALPEHKPDVFRMPVSSDQNASWIDK
VIKRCLGGLRHWDGEYFLHIAENLYSYENTLAFYPLYPVVVRHVGQAVEA
IGISLSQESILLVVAVALNFWLFCESANLLFQLTQVLFNDLNKSWNAALI
YCFNPATIFFTAAYSETFFAYSSLHLMLECSKPTGSFRYLRLGTALAACL
LCRSNGLITLGYPLYFFGRQLLLKNKEPNTCMQLTQMTLTILGAIGILHT
YYFYIYRLYCLPNTRPNHPQHIVDYAVERKYLLSGQGSEGSPWCQYTLPF
PYTYVQSHYWDVGFLRYYKWKQLPNFLLALPMLSFMHWHCYDYMQHLAKA
VWAKLTPSGFKELIRDHTTFPFVLHAAILTLVCTVYVHIQVSTRLLASAT
PVFYWFAADHMPKTLAQLKLRSKAGALFVWCTTYSLVGTVLFSNNYPWT*

RE16378.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19771-PA 454 GF19771-PA 1..454 1..449 1852 73.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20647-PA 448 GG20647-PA 1..448 1..449 2083 87.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22950-PA 452 GH22950-PA 1..452 1..449 1575 63 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-V-PC 449 CG44239-PC 1..449 1..449 2414 100 Plus
PIG-V-PB 449 CG44239-PB 1..449 1..449 2414 100 Plus
PIG-V-PA 449 CG44239-PA 1..449 1..449 2414 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18441-PA 449 GI18441-PA 1..449 1..449 1604 64.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11574-PA 452 GL11574-PA 1..452 1..449 1738 69.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19757-PA 452 GA19757-PA 1..452 1..449 1730 69.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21742-PA 449 GM21742-PA 1..449 1..449 2286 94.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11235-PA 449 GD11235-PA 1..449 1..449 2286 94.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21525-PA 449 GJ21525-PA 1..449 1..449 1607 63.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22036-PA 459 GK22036-PA 1..459 1..449 1727 70.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11632-PA 449 GE11632-PA 1..449 1..449 2206 93.1 Plus