BDGP Sequence Production Resources |
Search the DGRC for RE16487
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 164 |
Well: | 87 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5013-RA |
Protein status: | RE16487.pep: gold |
Sequenced Size: | 975 |
Gene | Date | Evidence |
---|---|---|
CG5013 | 2001-12-14 | Blastp of sequenced clone |
CG5013 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5013 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5013 | 2008-04-29 | Release 5.5 accounting |
CG5013 | 2008-08-15 | Release 5.9 accounting |
CG5013 | 2008-12-18 | 5.12 accounting |
975 bp (975 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071109
> RE16487.complete ATCGCAACGAAGTGACATCGCTAATCAAACAGGTTGTAAACAAAACGCTG AAAAATAACTTTAGTTTAGTGAAAATAGTAATACTCCTGCATGCTTGAGC TAAGATGCGTTTCCACATGAAGAGCGGCAGCGAGGACAATGACATTGTGG CGGCCACAGCCACTGCCGAGCATATCCGCAAGTTTGTCTTCAGCGGATCA CCCGCCGAGCGACTGGAGATCAAAATACCTGAGCTGCTTCAGGGTGCCTA CTCCTTCTACACATGGCCTTGCGCACCAATTTTAGCCCACTTCCTGTGGG AGCGCCGACAGACACTGGCGGGCAAGCGCATCCTGGAGCTGGGAAGCGGC ACCGCCCTGCCCGGCATTCTGGCGGCCAAATGCCGCGCCCAAGTGGTACT TACTGACAACTGCATTCTGCCCAAGTCACTGGCCCATATCCGAAAGTCCT GCCTGGCCAATCAACTGCAGCCGGGCGTTGATATCGATGTGGTGGGCCTG AGTTGGGGCCTGCTGCTGAACAGCGTGTTCCGACTGCCGCCTCTGGACCT TATCATTGCAGCAGACTGCTTCTACGATCCCAGCGTGTTCGAGGATATCG TGGTCACAGTTGCTTTTCTGCTGGAGCGAAATGCCGGGGCCAAATTTATA TTTACATACCAGGAGCGGAGCGCCGACTGGTCCATAGAGGCGCTGCTCAA GAAGTGGAAGCTGCAGGCTTTACCCATCAGCATGGAGGACATTGGCAAGG AGTCGGGAGTGGATCTGCTGGAGTTTATGGGCGGACACACTATTCATCTT CTGGAGATCACGCGCATCGAAAGCGATGGCTCAATAAATACAACATAACA ATTATACAATTGGCTTTTTTTATGCTGAATGTCAAATCTCTCTTAGTTAA TGTTCTACACGGGAATGCTCCCAAACATCAAATAAATATTTGCCTGTGGT AATCGCTCGAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11874262..11874494 | 1..233 | 100 | -> | Plus |
chr3R | 11874546..11875271 | 234..959 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5013-RA | 1..744 | 105..848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5013-RA | 1..744 | 105..848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5013-RA | 1..744 | 105..848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5013-RA | 1..744 | 105..848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5013-RA | 1..744 | 105..848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5013-RA | 14..972 | 1..959 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5013-RA | 14..972 | 1..959 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5013-RA | 15..973 | 1..959 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5013-RA | 14..972 | 1..959 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5013-RA | 15..973 | 1..959 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16049684..16049916 | 1..233 | 100 | -> | Plus |
3R | 16049968..16050693 | 234..959 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16049684..16049916 | 1..233 | 100 | -> | Plus |
3R | 16049968..16050693 | 234..959 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16049684..16049916 | 1..233 | 100 | -> | Plus |
3R | 16049968..16050693 | 234..959 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11875406..11875638 | 1..233 | 100 | -> | Plus |
arm_3R | 11875690..11876415 | 234..959 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15790515..15790747 | 1..233 | 100 | -> | Plus |
3R | 15790799..15791524 | 234..959 | 99 | Plus |
Translation from 104 to 847
> RE16487.pep MRFHMKSGSEDNDIVAATATAEHIRKFVFSGSPAERLEIKIPELLQGAYS FYTWPCAPILAHFLWERRQTLAGKRILELGSGTALPGILAAKCRAQVVLT DNCILPKSLAHIRKSCLANQLQPGVDIDVVGLSWGLLLNSVFRLPPLDLI IAADCFYDPSVFEDIVVTVAFLLERNAGAKFIFTYQERSADWSIEALLKK WKLQALPISMEDIGKESGVDLLEFMGGHTIHLLEITRIESDGSINTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11913-PA | 252 | GF11913-PA | 1..251 | 1..246 | 1179 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16975-PA | 247 | GG16975-PA | 1..247 | 1..247 | 1271 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18761-PA | 255 | GH18761-PA | 1..246 | 1..239 | 1099 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5013-PA | 247 | CG5013-PA | 1..247 | 1..247 | 1274 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22652-PA | 244 | GI22652-PA | 1..239 | 1..236 | 1085 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12217-PA | 248 | GL12217-PA | 1..247 | 1..246 | 1218 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18595-PA | 248 | GA18595-PA | 1..247 | 1..246 | 1215 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24281-PA | 247 | GM24281-PA | 1..247 | 1..247 | 1306 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19071-PA | 247 | GD19071-PA | 1..247 | 1..247 | 1306 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23380-PA | 255 | GJ23380-PA | 1..246 | 1..239 | 1097 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13257-PA | 236 | GK13257-PA | 1..219 | 1..219 | 1005 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24363-PA | 247 | GE24363-PA | 1..247 | 1..247 | 1282 | 97.6 | Plus |
Translation from 104 to 847
> RE16487.hyp MRFHMKSGSEDNDIVAATATAEHIRKFVFSGSPAERLEIKIPELLQGAYS FYTWPCAPILAHFLWERRQTLAGKRILELGSGTALPGILAAKCRAQVVLT DNCILPKSLAHIRKSCLANQLQPGVDIDVVGLSWGLLLNSVFRLPPLDLI IAADCFYDPSVFEDIVVTVAFLLERNAGAKFIFTYQERSADWSIEALLKK WKLQALPISMEDIGKESGVDLLEFMGGHTIHLLEITRIESDGSINTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5013-PA | 247 | CG5013-PA | 1..247 | 1..247 | 1274 | 100 | Plus |