Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE16596.complete Sequence
1588 bp (1588 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119117
> RE16596.complete
GATTACTTGCCTTTTATTAACTTGGTTTTTGGACCTCCTCGAAAATATCA
GCAAAATGACAGAAGCGGAAATTTGCAAACTATGCAAGGATAACCGAGCA
ATTGAGATCGATCTCGAGAAGCCCAAATTCAAATCGGCCAATAAACTGCT
GCAAAGACTTTTCGATTGGTACAAAATTGATGCTGCTATCCTGGGGGAAA
ATTACTGCATTTGCGAGCCCTGCTTTGGAGAGACTTTGCGCATAAGCGAA
TCCCTGGAGAAGTGGGGCACGGCCCAGGACGAGTTTCACCGGAGGCCCAT
CGAAATAGACGACTCCACTGCATTTCAGATCAAGTTGGAGGTGACATCAA
ACAAAGAAGAGGTAGAAACGGAAAAGAATGATGAGGAGAATTCTTTCGAT
CAGCATATCGCGGAGCCAGTGAAGGAAGATCCATTGGAAAAAAACGAGCA
TATGGAGATCGTAGTCGAAGAATCTTTGAAAACCGCGTCCGTGGATTTCT
TCAGCGTGGGATTGTCACGCGATGGCTTGGCAGTCACCAAGTTCTTCAAG
GACAAGACCCAAGCCACTCGGATGCTGTGCACCTGTTGCGGCCATGTGCT
CGAAATCCTGACCCACATACGCATGCATTCTTGTAAACCCCGCCCGAATC
CGGTCTACTATTGCCGCGATTGTGGTTCAGAGTTCCACAAACTACACGAA
CTACATGAGCACATGAAGACGATGAAACACAACAAGACCATGTGCGGCGC
AAAGGATTTGGAATTTCTGTGCCTCAGATGCAACCAGATATTCCCACGCT
ATTTCGACGTTATCCGCCACGAGAACAGCGTTCACAATGTATCCGATTTC
ATCTGCGTGGAGTGCAACATGTCCTTCGCTAACCAAGGATCCTACAGGAG
GCACACGAGGAGCCATAAAGTCAAATTCACGCAGCAGCGATTTTATGAGT
GCCCATATAAGGACTGCACCTCAAGTTATCGAGTGTGGGCGCGCTTAATG
TCGCACATGAGTTCCCACGGCCTCTTTTCTGGATTCAAAAGCAAAGTGCC
GTCTACCCAACAGGAACGACGTCTTCTGGAGGGCAAGTTTATGACGCTGG
ACCCCATGAAACGGGTTGAACCCGATCGCCGAAAGTTGCCATACCGCAAG
AAAAGCTTTTACGCTAAGGCAGATTTCCCGGAATCCCCGACGAAATGTAC
CAACGGAGGAGAGTTCATCAGCCTGCCCAAGAAAATTTCCCTGCAGAAGG
GAAAATACATCAATCTTTCGGACAATTCAAGACCTTAGTTACCAACTAGG
CTAGCAAATAATGGTAATCTTGAAAACTGATTAAATTGTATAAATTAATA
TTTCCACTACTGTGTGTATATTATTAATTCTTAGATAGCCAATTTTAGTA
TAACTTTTTTGTTATTAAGAAATTTACCCCCGCGTTGTATTCTTTACAAT
TGTGAAAAAAGGCGGATAAAACATACTTCCGTTTTATAATTTCTCTTCGT
GGATAAACGTTGAGATGAAGTGTTTTTAAACCCAATAGAAATAAACAATC
AGTTTTAAAACTTGGTACACCAAAAAAAAAAAAAAAAA
RE16596.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i1-RA | 1591 | CkIIalpha-i1-RA | 21..1589 | 1..1569 | 7845 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 15807056..15808443 | 182..1569 | 6940 | 100 | Plus |
chr3L | 24539361 | chr3L | 15806817..15806998 | 1..182 | 910 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15817232..15818623 | 182..1573 | 6945 | 99.9 | Plus |
3L | 28110227 | 3L | 15816993..15817174 | 1..182 | 910 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 15810332..15811723 | 182..1573 | 6945 | 99.9 | Plus |
3L | 28103327 | 3L | 15810093..15810274 | 1..182 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 12:43:52 has no hits.
RE16596.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:44:42 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 15806817..15806997 | 1..181 | 100 | -> | Plus |
chr3L | 15807056..15808445 | 182..1571 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:58:09 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i1-RA | 1..1233 | 56..1288 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:47:59 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i1-RA | 1..1233 | 56..1288 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:21 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i1-RA | 1..1233 | 56..1288 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:40:25 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i1-RA | 1..1233 | 56..1288 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:15 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i1-RA | 1..1233 | 56..1288 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:24:20 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i1-RA | 1..1564 | 1..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:47:59 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i1-RA | 4..1574 | 1..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:21 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i1-RA | 15..1585 | 1..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:40:25 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i1-RA | 1..1564 | 1..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:15 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i1-RA | 15..1585 | 1..1571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:42 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15816993..15817173 | 1..181 | 100 | -> | Plus |
3L | 15817232..15818621 | 182..1571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:42 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15816993..15817173 | 1..181 | 100 | -> | Plus |
3L | 15817232..15818621 | 182..1571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:42 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15816993..15817173 | 1..181 | 100 | -> | Plus |
3L | 15817232..15818621 | 182..1571 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:21 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15810093..15810273 | 1..181 | 100 | -> | Plus |
arm_3L | 15810332..15811721 | 182..1571 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:12:46 Download gff for
RE16596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15810332..15811721 | 182..1571 | 99 | | Plus |
3L | 15810093..15810273 | 1..181 | 100 | -> | Plus |
RE16596.hyp Sequence
Translation from 0 to 1287
> RE16596.hyp
ITCLLLTWFLDLLENISKMTEAEICKLCKDNRAIEIDLEKPKFKSANKLL
QRLFDWYKIDAAILGENYCICEPCFGETLRISESLEKWGTAQDEFHRRPI
EIDDSTAFQIKLEVTSNKEEVETEKNDEENSFDQHIAEPVKEDPLEKNEH
MEIVVEESLKTASVDFFSVGLSRDGLAVTKFFKDKTQATRMLCTCCGHVL
EILTHIRMHSCKPRPNPVYYCRDCGSEFHKLHELHEHMKTMKHNKTMCGA
KDLEFLCLRCNQIFPRYFDVIRHENSVHNVSDFICVECNMSFANQGSYRR
HTRSHKVKFTQQRFYECPYKDCTSSYRVWARLMSHMSSHGLFSGFKSKVP
STQQERRLLEGKFMTLDPMKRVEPDRRKLPYRKKSFYAKADFPESPTKCT
NGGEFISLPKKISLQKGKYINLSDNSRP*
RE16596.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i1-PA | 410 | CG6215-PA | 1..410 | 19..428 | 2218 | 100 | Plus |
CG1792-PA | 372 | CG1792-PA | 53..332 | 70..340 | 162 | 24.7 | Plus |
RE16596.pep Sequence
Translation from 55 to 1287
> RE16596.pep
MTEAEICKLCKDNRAIEIDLEKPKFKSANKLLQRLFDWYKIDAAILGENY
CICEPCFGETLRISESLEKWGTAQDEFHRRPIEIDDSTAFQIKLEVTSNK
EEVETEKNDEENSFDQHIAEPVKEDPLEKNEHMEIVVEESLKTASVDFFS
VGLSRDGLAVTKFFKDKTQATRMLCTCCGHVLEILTHIRMHSCKPRPNPV
YYCRDCGSEFHKLHELHEHMKTMKHNKTMCGAKDLEFLCLRCNQIFPRYF
DVIRHENSVHNVSDFICVECNMSFANQGSYRRHTRSHKVKFTQQRFYECP
YKDCTSSYRVWARLMSHMSSHGLFSGFKSKVPSTQQERRLLEGKFMTLDP
MKRVEPDRRKLPYRKKSFYAKADFPESPTKCTNGGEFISLPKKISLQKGK
YINLSDNSRP*
RE16596.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF10374-PA | 362 | GF10374-PA | 1..362 | 1..361 | 495 | 32.3 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG15929-PA | 424 | GG15929-PA | 1..424 | 1..410 | 1482 | 66.8 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i1-PA | 410 | CG6215-PA | 1..410 | 1..410 | 2218 | 100 | Plus |
CG1792-PA | 372 | CG1792-PA | 53..332 | 52..322 | 162 | 24.7 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL25211-PA | 320 | GL25211-PA | 1..319 | 1..326 | 490 | 33.9 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA19446-PA | 392 | GA19446-PA | 1..392 | 1..397 | 534 | 32.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM25559-PA | 401 | GM25559-PA | 2..401 | 4..407 | 1622 | 76.6 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD14574-PA | 488 | GD14574-PA | 1..240 | 1..238 | 1026 | 81.2 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ11366-PA | 310 | GJ11366-PA | 1..277 | 57..321 | 209 | 23.6 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK15647-PA | 512 | GK15647-PA | 17..400 | 4..321 | 250 | 24 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22279-PA | 416 | GE22279-PA | 1..416 | 1..410 | 1367 | 65.8 | Plus |