Clone RE16596 Report

Search the DGRC for RE16596

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:165
Well:96
Vector:pFlc-1
Associated Gene/TranscriptCkIIalpha-i1-RA
Protein status:RE16596.pep: gold
Preliminary Size:1233
Sequenced Size:1588

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6215 2002-01-01 Sim4 clustering to Release 2
CG6215 2002-05-18 Blastp of sequenced clone
CG6215 2003-01-01 Sim4 clustering to Release 3
CkIIalpha-i1 2008-04-29 Release 5.5 accounting
CkIIalpha-i1 2008-08-15 Release 5.9 accounting
CkIIalpha-i1 2008-12-18 5.12 accounting

Clone Sequence Records

RE16596.complete Sequence

1588 bp (1588 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119117

> RE16596.complete
GATTACTTGCCTTTTATTAACTTGGTTTTTGGACCTCCTCGAAAATATCA
GCAAAATGACAGAAGCGGAAATTTGCAAACTATGCAAGGATAACCGAGCA
ATTGAGATCGATCTCGAGAAGCCCAAATTCAAATCGGCCAATAAACTGCT
GCAAAGACTTTTCGATTGGTACAAAATTGATGCTGCTATCCTGGGGGAAA
ATTACTGCATTTGCGAGCCCTGCTTTGGAGAGACTTTGCGCATAAGCGAA
TCCCTGGAGAAGTGGGGCACGGCCCAGGACGAGTTTCACCGGAGGCCCAT
CGAAATAGACGACTCCACTGCATTTCAGATCAAGTTGGAGGTGACATCAA
ACAAAGAAGAGGTAGAAACGGAAAAGAATGATGAGGAGAATTCTTTCGAT
CAGCATATCGCGGAGCCAGTGAAGGAAGATCCATTGGAAAAAAACGAGCA
TATGGAGATCGTAGTCGAAGAATCTTTGAAAACCGCGTCCGTGGATTTCT
TCAGCGTGGGATTGTCACGCGATGGCTTGGCAGTCACCAAGTTCTTCAAG
GACAAGACCCAAGCCACTCGGATGCTGTGCACCTGTTGCGGCCATGTGCT
CGAAATCCTGACCCACATACGCATGCATTCTTGTAAACCCCGCCCGAATC
CGGTCTACTATTGCCGCGATTGTGGTTCAGAGTTCCACAAACTACACGAA
CTACATGAGCACATGAAGACGATGAAACACAACAAGACCATGTGCGGCGC
AAAGGATTTGGAATTTCTGTGCCTCAGATGCAACCAGATATTCCCACGCT
ATTTCGACGTTATCCGCCACGAGAACAGCGTTCACAATGTATCCGATTTC
ATCTGCGTGGAGTGCAACATGTCCTTCGCTAACCAAGGATCCTACAGGAG
GCACACGAGGAGCCATAAAGTCAAATTCACGCAGCAGCGATTTTATGAGT
GCCCATATAAGGACTGCACCTCAAGTTATCGAGTGTGGGCGCGCTTAATG
TCGCACATGAGTTCCCACGGCCTCTTTTCTGGATTCAAAAGCAAAGTGCC
GTCTACCCAACAGGAACGACGTCTTCTGGAGGGCAAGTTTATGACGCTGG
ACCCCATGAAACGGGTTGAACCCGATCGCCGAAAGTTGCCATACCGCAAG
AAAAGCTTTTACGCTAAGGCAGATTTCCCGGAATCCCCGACGAAATGTAC
CAACGGAGGAGAGTTCATCAGCCTGCCCAAGAAAATTTCCCTGCAGAAGG
GAAAATACATCAATCTTTCGGACAATTCAAGACCTTAGTTACCAACTAGG
CTAGCAAATAATGGTAATCTTGAAAACTGATTAAATTGTATAAATTAATA
TTTCCACTACTGTGTGTATATTATTAATTCTTAGATAGCCAATTTTAGTA
TAACTTTTTTGTTATTAAGAAATTTACCCCCGCGTTGTATTCTTTACAAT
TGTGAAAAAAGGCGGATAAAACATACTTCCGTTTTATAATTTCTCTTCGT
GGATAAACGTTGAGATGAAGTGTTTTTAAACCCAATAGAAATAAACAATC
AGTTTTAAAACTTGGTACACCAAAAAAAAAAAAAAAAA

RE16596.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i1-RA 1591 CkIIalpha-i1-RA 21..1589 1..1569 7845 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15807056..15808443 182..1569 6940 100 Plus
chr3L 24539361 chr3L 15806817..15806998 1..182 910 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:38:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15817232..15818623 182..1573 6945 99.9 Plus
3L 28110227 3L 15816993..15817174 1..182 910 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15810332..15811723 182..1573 6945 99.9 Plus
3L 28103327 3L 15810093..15810274 1..182 910 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:43:52 has no hits.

RE16596.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:44:42 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15806817..15806997 1..181 100 -> Plus
chr3L 15807056..15808445 182..1571 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:58:09 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i1-RA 1..1233 56..1288 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:47:59 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i1-RA 1..1233 56..1288 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:21 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i1-RA 1..1233 56..1288 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:40:25 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i1-RA 1..1233 56..1288 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:15 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i1-RA 1..1233 56..1288 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:24:20 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i1-RA 1..1564 1..1564 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:47:59 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i1-RA 4..1574 1..1571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:21 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i1-RA 15..1585 1..1571 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:40:25 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i1-RA 1..1564 1..1564 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:15 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i1-RA 15..1585 1..1571 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:42 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15816993..15817173 1..181 100 -> Plus
3L 15817232..15818621 182..1571 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:42 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15816993..15817173 1..181 100 -> Plus
3L 15817232..15818621 182..1571 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:42 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15816993..15817173 1..181 100 -> Plus
3L 15817232..15818621 182..1571 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:21 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15810093..15810273 1..181 100 -> Plus
arm_3L 15810332..15811721 182..1571 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:12:46 Download gff for RE16596.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15810332..15811721 182..1571 99   Plus
3L 15810093..15810273 1..181 100 -> Plus

RE16596.hyp Sequence

Translation from 0 to 1287

> RE16596.hyp
ITCLLLTWFLDLLENISKMTEAEICKLCKDNRAIEIDLEKPKFKSANKLL
QRLFDWYKIDAAILGENYCICEPCFGETLRISESLEKWGTAQDEFHRRPI
EIDDSTAFQIKLEVTSNKEEVETEKNDEENSFDQHIAEPVKEDPLEKNEH
MEIVVEESLKTASVDFFSVGLSRDGLAVTKFFKDKTQATRMLCTCCGHVL
EILTHIRMHSCKPRPNPVYYCRDCGSEFHKLHELHEHMKTMKHNKTMCGA
KDLEFLCLRCNQIFPRYFDVIRHENSVHNVSDFICVECNMSFANQGSYRR
HTRSHKVKFTQQRFYECPYKDCTSSYRVWARLMSHMSSHGLFSGFKSKVP
STQQERRLLEGKFMTLDPMKRVEPDRRKLPYRKKSFYAKADFPESPTKCT
NGGEFISLPKKISLQKGKYINLSDNSRP*

RE16596.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i1-PA 410 CG6215-PA 1..410 19..428 2218 100 Plus
CG1792-PA 372 CG1792-PA 53..332 70..340 162 24.7 Plus

RE16596.pep Sequence

Translation from 55 to 1287

> RE16596.pep
MTEAEICKLCKDNRAIEIDLEKPKFKSANKLLQRLFDWYKIDAAILGENY
CICEPCFGETLRISESLEKWGTAQDEFHRRPIEIDDSTAFQIKLEVTSNK
EEVETEKNDEENSFDQHIAEPVKEDPLEKNEHMEIVVEESLKTASVDFFS
VGLSRDGLAVTKFFKDKTQATRMLCTCCGHVLEILTHIRMHSCKPRPNPV
YYCRDCGSEFHKLHELHEHMKTMKHNKTMCGAKDLEFLCLRCNQIFPRYF
DVIRHENSVHNVSDFICVECNMSFANQGSYRRHTRSHKVKFTQQRFYECP
YKDCTSSYRVWARLMSHMSSHGLFSGFKSKVPSTQQERRLLEGKFMTLDP
MKRVEPDRRKLPYRKKSFYAKADFPESPTKCTNGGEFISLPKKISLQKGK
YINLSDNSRP*

RE16596.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10374-PA 362 GF10374-PA 1..362 1..361 495 32.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15929-PA 424 GG15929-PA 1..424 1..410 1482 66.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i1-PA 410 CG6215-PA 1..410 1..410 2218 100 Plus
CG1792-PA 372 CG1792-PA 53..332 52..322 162 24.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25211-PA 320 GL25211-PA 1..319 1..326 490 33.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19446-PA 392 GA19446-PA 1..392 1..397 534 32.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25559-PA 401 GM25559-PA 2..401 4..407 1622 76.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14574-PA 488 GD14574-PA 1..240 1..238 1026 81.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11366-PA 310 GJ11366-PA 1..277 57..321 209 23.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15647-PA 512 GK15647-PA 17..400 4..321 250 24 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22279-PA 416 GE22279-PA 1..416 1..410 1367 65.8 Plus